Rmu_sc0027697.1_g000001

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027697.1
OG0009651
Physical Location & Seq
Reverse (-)
2 .. 690
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027697.1_g000001.1.cds

Sequence Viewer

Length: 689 bp
ctggaagtcccgccggcccccggagccatcgaggcccgcatttccgtgctgcggcttctctacagcgacgacgacgatttcgcctccactataaacaccgcggcggcggcgatcgagctcctcccggtggccttggagcttctcttcgaggactgcgtccggcgatgcgttcagttcctcgaggccgtgccgtggacggaggaggaggagagtcgcgtcctagctctggtccctcttctgagcgaagacgaatcgaaggacctcctggctagggtttcggggacgaacaattccagcgaggaaatgctgtatggattgatcacctccgtgattcacaatccgaacatggcgtacgtcaaggcgtttgtggccaagctgctgagggagttctccgccaggggctcggcggagcgagttctggagagggcgtttcagagcaccttcaaggtggtcaaggagtccatggaggactacaccaggcccggagtgaggggagaccacaatgagactgaggctatccagaggctgaatttgcatacggctatgaccaatgggaggcacctgctgtggctggtggagaggatggttgagctcagggtggctgatgccgccgtcaaggcttggagcgagcagccgtcgtttactgcggatttgcagagggcgtttcgtgacgatgcgtggaggaatat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.79

Weight (kDa)

4.87

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 570
AbsI CCTCGAGG 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 558
AccII CGCG 2 cut(s) 101, 216
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 529
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 8 cut(s) 20, 51, 127, 192, 226, 271, 489, 555
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 3 cut(s) 264, 395, 476
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 5 cut(s) 118, 139, 224, 376, 592
AluI AGCT 5 cut(s) 118, 139, 224, 376, 592
Alw21I GWGCWC 3 cut(s) 120, 440, 594
Alw26I GTCTC 2 cut(s) 489, 500
AlwNI CAGNNNCTG 1 cut(s) 526
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 6 cut(s) 15, 33, 129, 183, 369, 479
ApeKI GCWGC 3 cut(s) 49, 376, 631
ApoI RAATTY 1 cut(s) 529
ArsI GACNNNNNNTTYG 2 cut(s) 62, 94
AspS9I GGNCC 5 cut(s) 16, 34, 229, 259, 480
AsuC2I CCSGG 3 cut(s) 21, 125, 483
AsuHPI GGTGA 1 cut(s) 313
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 2 cut(s) 229, 259
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 1 cut(s) 558
BanII GRGCYC 3 cut(s) 120, 404, 594
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 3 cut(s) 120, 440, 594
BbvCI CCTCAGC 1 cut(s) 380
BbvI GCAGC 3 cut(s) 36, 363, 643
BccI CCATC 2 cut(s) 35, 577
BceAI ACGGC 5 cut(s) 170, 175, 555, 596, 619
BciT130I CCWGG 3 cut(s) 266, 397, 478
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 3 cut(s) 21, 125, 483
BcoDI GTCTC 2 cut(s) 489, 500
BfaI CTAG 2 cut(s) 221, 270
BfmI CTRYAG 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 570
BglI GCCNNNNNGGC 2 cut(s) 32, 617
BisI GCNGC 8 cut(s) 50, 53, 102, 105, 108, 377, 609, 632
BlsI GCNGC 8 cut(s) 51, 54, 103, 106, 109, 378, 610, 633
Bme1390I CCNGG 6 cut(s) 21, 125, 266, 397, 478, 483
Bme18I GGWCC 2 cut(s) 229, 259
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 5 cut(s) 16, 34, 229, 259, 480
BmiI GGNNCC 4 cut(s) 18, 25, 231, 560
BmrFI CCNGG 6 cut(s) 21, 125, 266, 397, 478, 483
BmsI GCATC 3 cut(s) 155, 595, 664
BpiI GAAGAC 1 cut(s) 252
BpmI CTGGAG 1 cut(s) 440
Bpu10I CCTNAGC 2 cut(s) 380, 593
BpuMI CCSGG 3 cut(s) 21, 125, 483
BsaI GGTCTC 1 cut(s) 489
BsaJI CCNNGG 6 cut(s) 19, 99, 132, 191, 396, 462
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 8 cut(s) 20, 51, 127, 192, 226, 271, 489, 555
Bse118I RCCGGY 1 cut(s) 13
BseBI CCWGG 3 cut(s) 266, 397, 478
BseDI CCNNGG 6 cut(s) 19, 99, 132, 191, 396, 462
BseGI GGATG 1 cut(s) 588
BseLI CCNNNNNNNGG 8 cut(s) 20, 51, 127, 192, 226, 271, 489, 555
BseMII CTCAG 4 cut(s) 230, 371, 501, 607
BseRI GAGGAG 4 cut(s) 110, 215, 218, 221
BseXI GCAGC 3 cut(s) 36, 363, 643
Bsh1236I CGCG 2 cut(s) 101, 216
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 6 cut(s) 17, 35, 131, 185, 371, 481
BshNI GGYRCC 1 cut(s) 558
BsiEI CGRYCG 1 cut(s) 114
BsiHKAI GWGCWC 3 cut(s) 120, 440, 594
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 5 cut(s) 14, 21, 125, 160, 483
BsiWI CGTACG 1 cut(s) 351
BslFI GGGAC 2 cut(s) 215, 295
BslI CCNNNNNNNGG 8 cut(s) 20, 51, 127, 192, 226, 271, 489, 555
BsmAI GTCTC 2 cut(s) 489, 500
BsmFI GGGAC 2 cut(s) 215, 295
BsnI GGCC 6 cut(s) 17, 35, 131, 185, 371, 481
Bso31I GGTCTC 1 cut(s) 489
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 4 cut(s) 120, 404, 440, 594
Bsp143I GATC 2 cut(s) 111, 318
Bsp19I CCATGG 1 cut(s) 462
BspANI GGCC 6 cut(s) 17, 35, 131, 185, 371, 481
BspCNI CTCAG 4 cut(s) 231, 372, 502, 606
BspFNI CGCG 2 cut(s) 101, 216
BspLI GGNNCC 4 cut(s) 18, 25, 231, 560
BspMI ACCTGC 1 cut(s) 570
BspT107I GGYRCC 1 cut(s) 558
BspTNI GGTCTC 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 6 cut(s) 19, 99, 132, 191, 396, 462
BssMI GATC 2 cut(s) 111, 318
BssT1I CCWWGG 2 cut(s) 132, 462
Bst2UI CCWGG 3 cut(s) 266, 397, 478
Bst6I CTCTTC 2 cut(s) 149, 240
BstC8I GCNNGC 3 cut(s) 15, 37, 629
BstDEI CTNAG 4 cut(s) 239, 380, 510, 593
BstDSI CCRYGG 3 cut(s) 99, 191, 462
BstF5I GGATG 1 cut(s) 588
BstFNI CGCG 2 cut(s) 101, 216
BstKTI GATC 2 cut(s) 114, 321
BstMAI GTCTC 2 cut(s) 489, 500
BstMBI GATC 2 cut(s) 111, 318
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 107, 368, 532, 608, 617
BstNI CCWGG 3 cut(s) 266, 397, 478
BstSCI CCNGG 6 cut(s) 19, 123, 264, 395, 476, 481
BstSFI CTRYAG 1 cut(s) 61
BstUI CGCG 2 cut(s) 101, 216
BstV1I GCAGC 3 cut(s) 36, 363, 643
BstV2I GAAGAC 1 cut(s) 252
BsuRI GGCC 6 cut(s) 17, 35, 131, 185, 371, 481
BtgI CCRYGG 3 cut(s) 99, 191, 462
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 1 cut(s) 588
BveI ACCTGC 1 cut(s) 570
Cac8I GCNNGC 3 cut(s) 15, 37, 629
CaiI CAGNNNCTG 1 cut(s) 526
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 5 cut(s) 16, 34, 229, 259, 480
Cfr42I CCGCGG 1 cut(s) 102
CseI GACGC 2 cut(s) 145, 205
Csp6I GTAC 1 cut(s) 352
CviAII CATG 2 cut(s) 346, 463
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 4 cut(s) 239, 380, 510, 593
DpnI GATC 2 cut(s) 113, 320
DpnII GATC 2 cut(s) 111, 318
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 149, 240
EarI CTCTTC 2 cut(s) 149, 240
EciI GGCGGA 2 cut(s) 382, 422
Ecl136II GAGCTC 2 cut(s) 118, 592
Eco130I CCWWGG 2 cut(s) 132, 462
Eco24I GRGCYC 3 cut(s) 120, 404, 594
Eco31I GGTCTC 1 cut(s) 489
Eco47I GGWCC 2 cut(s) 229, 259
Eco53kI GAGCTC 2 cut(s) 118, 592
Eco88I CYCGRG 1 cut(s) 179
EcoICRI GAGCTC 2 cut(s) 118, 592
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 3 cut(s) 264, 395, 476
EcoT14I CCWWGG 2 cut(s) 132, 462
EcoT38I GRGCYC 3 cut(s) 120, 404, 594
ErhI CCWWGG 2 cut(s) 132, 462
FaeI CATG 2 cut(s) 349, 466
FaiI YATR 6 cut(s) 92, 312, 347, 464, 537, 545
FaqI GGGAC 2 cut(s) 215, 295
FatI CATG 2 cut(s) 345, 462
FauI CCCGC 2 cut(s) 18, 44
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 8 cut(s) 50, 53, 102, 105, 108, 377, 609, 632
FokI GGATG 1 cut(s) 595
FriOI GRGCYC 3 cut(s) 120, 404, 594
Fsp4HI GCNGC 8 cut(s) 50, 53, 102, 105, 108, 377, 609, 632
FspBI CTAG 2 cut(s) 221, 270
GluI GCNGC 8 cut(s) 50, 53, 102, 105, 108, 377, 609, 632
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 6 cut(s) 17, 35, 131, 185, 371, 481
HapII CCGG 5 cut(s) 14, 21, 125, 160, 483
HgaI GACGC 2 cut(s) 145, 205
Hin1II CATG 2 cut(s) 349, 466
HinfI GANTC 4 cut(s) 211, 251, 331, 458
HpaII CCGG 5 cut(s) 14, 21, 125, 160, 483
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 2 cut(s) 195, 642
Hpy188I TCNGA 3 cut(s) 240, 342, 435
Hpy188III TCNNGA 3 cut(s) 419, 520, 668
Hpy8I GTNNAC 2 cut(s) 195, 642
Hpy99I CGWCG 4 cut(s) 71, 74, 77, 640
HpyAV CCTTC 2 cut(s) 250, 451
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 2 cut(s) 535, 655
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 107, 368, 532, 608, 617
HpyF3I CTNAG 4 cut(s) 239, 380, 510, 593
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 2 cut(s) 349, 466
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
Ksp22I TGATCA 1 cut(s) 318
KspI CCGCGG 1 cut(s) 102
Kzo9I GATC 2 cut(s) 111, 318
LmnI GCTCC 5 cut(s) 23, 123, 136, 409, 624
Lsp1109I GCAGC 3 cut(s) 36, 363, 643
LweI GCATC 3 cut(s) 155, 595, 664
MaeI CTAG 2 cut(s) 221, 270
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 668
MalI GATC 2 cut(s) 113, 320
MboI GATC 2 cut(s) 111, 318
MboII GAAGA 3 cut(s) 136, 227, 257
MhlI GDGCHC 4 cut(s) 120, 404, 440, 594
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 2 cut(s) 289, 529
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 2 cut(s) 220, 467
Mox20I TGGCCA 1 cut(s) 371
MroNI GCCGGC 1 cut(s) 13
MscI TGGCCA 1 cut(s) 371
MslI CAYNNNNRTG 2 cut(s) 44, 326
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 5 cut(s) 14, 21, 125, 160, 483
MspR9I CCNGG 6 cut(s) 21, 125, 266, 397, 478, 483
MvaI CCWGG 3 cut(s) 266, 397, 478
MvnI CGCG 2 cut(s) 101, 216
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 107, 368, 532, 608, 617
NaeI GCCGGC 1 cut(s) 15
NciI CCSGG 3 cut(s) 21, 125, 483
NcoI CCATGG 1 cut(s) 462
NdeII GATC 2 cut(s) 111, 318
NgoMIV GCCGGC 1 cut(s) 13
NlaIII CATG 2 cut(s) 349, 466
NlaIV GGNNCC 4 cut(s) 18, 25, 231, 560
NmeAIII GCCGAG 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 668
OliI CACNNNNGTG 1 cut(s) 326
PaeR7I CTCGAG 1 cut(s) 179
PaqCI CACCTGC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdiI GCCGGC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 251, 331
Pfl23II CGTACG 1 cut(s) 351
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 8 cut(s) 51, 54, 103, 106, 109, 378, 610, 633
Ple19I CGATCG 1 cut(s) 114
PleI GAGTC 2 cut(s) 219, 466
PpsI GAGTC 2 cut(s) 219, 466
PpuMI RGGWCCY 1 cut(s) 259
Psp124BI GAGCTC 2 cut(s) 120, 594
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 3 cut(s) 264, 395, 476
PspGI CCWGG 3 cut(s) 264, 395, 476
PspLI CGTACG 1 cut(s) 351
PspN4I GGNNCC 4 cut(s) 18, 25, 231, 560
PspPI GGNCC 5 cut(s) 16, 34, 229, 259, 480
PspPPI RGGWCCY 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 179
PsrI GAACNNNNNNTAC 2 cut(s) 335, 367
PstNI CAGNNNCTG 1 cut(s) 526
PsyI GACNNNGTC 1 cut(s) 155
PvuI CGATCG 1 cut(s) 114
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 44, 326
SacI GAGCTC 2 cut(s) 120, 594
SacII CCGCGG 1 cut(s) 102
SatI GCNGC 8 cut(s) 50, 53, 102, 105, 108, 377, 609, 632
Sau3AI GATC 2 cut(s) 111, 318
Sau96I GGNCC 5 cut(s) 16, 34, 229, 259, 480
SchI GAGTC 2 cut(s) 220, 467
ScrFI CCNGG 6 cut(s) 21, 125, 266, 397, 478, 483
SduI GDGCHC 4 cut(s) 120, 404, 440, 594
SfaNI GCATC 3 cut(s) 155, 595, 664
SfcI CTRYAG 1 cut(s) 61
Sfr274I CTCGAG 1 cut(s) 179
Sfr303I CCGCGG 1 cut(s) 102
SgrBI CCGCGG 1 cut(s) 102
SinI GGWCC 2 cut(s) 229, 259
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 44, 326
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 2 cut(s) 289, 529
SspMI CTAG 2 cut(s) 221, 270
SstI GAGCTC 2 cut(s) 120, 594
StyD4I CCNGG 6 cut(s) 19, 123, 264, 395, 476, 481
StyI CCWWGG 2 cut(s) 132, 462
TaiI ACGT 1 cut(s) 357
TaqI TCGA 5 cut(s) 30, 114, 147, 180, 254
TasI AATT 2 cut(s) 289, 529
TauI GCSGC 5 cut(s) 55, 104, 107, 110, 611
TfiI GAWTC 2 cut(s) 251, 331
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 3 cut(s) 49, 376, 631
Tsp45I GTSAC 1 cut(s) 668
TspGWI ACGGA 3 cut(s) 34, 212, 316
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 229, 259
XapI RAATTY 1 cut(s) 529
XhoI CTCGAG 1 cut(s) 179
XspI CTAG 2 cut(s) 221, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.