Rmu_co8493477.1_g000001

poly ADP-ribose polymerase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8493477.1
Physical Location & Seq
Reverse (-)
2 .. 315
314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8493477.1_g000001.1.cds

Sequence Viewer

Length: 314 bp
atggtcaaggtagatgaagagagtgaggagcataagttgataaagattttctttgatttgggtatgggaacagaagccagtgttgtggctgtacacaagaatttgtgctctgaaggaacgacgagtcgagcaagattggagaggtttcggagtttctctaaggcagtggctcgaaagcatgggggcaatgccaatattgtgcctgcttggtatggtagttccagggatgagatatgtgagattttgttgaatgggtttagtcttagagaacctacatctaatgatgaaccttatggtgttgataccattcattt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.6

Weight (kDa)

5.78

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019041)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0213471
rosa_laevigata RLG00000002801
rosa_multiflora Rmu_co8493477.1_g000001
rosa_roxburghii Rroxscaffold_3G00245850
rosa_rugosa Rorug07G0142600
rosa_samantha Rh7AG274600 Rh7BG270100 Rh7CG293800 Rh7DG282100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 1 cut(s) 93
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 1 cut(s) 221
Alw21I GWGCWC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 91
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 159, 263
BstF5I GGATG 1 cut(s) 232
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 85
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 85, 171
Cac8I GCNNGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 179
CviJI RGCY 3 cut(s) 77, 89, 170
CviKI_1 RGCY 3 cut(s) 77, 89, 170
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 2 cut(s) 159, 263
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 221
FaeI CATG 1 cut(s) 182
FaiI YATR 6 cut(s) 33, 65, 180, 213, 235, 294
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FatI CATG 1 cut(s) 178
FokI GGATG 1 cut(s) 239
Hin1II CATG 1 cut(s) 182
HinfI GANTC 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 112, 150
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 107
HpyF3I CTNAG 2 cut(s) 159, 263
Hsp92II CATG 1 cut(s) 182
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 4 cut(s) 91, 208, 216, 235
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 1 cut(s) 100
MlyI GAGTC 1 cut(s) 133
MnlI CCTC 2 cut(s) 19, 135
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
NlaIII CATG 1 cut(s) 182
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SchI GAGTC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 110
SetI ASST 4 cut(s) 12, 146, 274, 292
Sse9I AATT 1 cut(s) 100
SspI AATATT 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 221
TaqI TCGA 2 cut(s) 127, 172
TasI AATT 1 cut(s) 100
TatI WGTACW 1 cut(s) 91
TscAI CASTG 2 cut(s) 85, 171
TspDTI ATGAA 3 cut(s) 30, 299, 300
TspRI CASTG 2 cut(s) 85, 171
XapI RAATTY 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.