Rh7DG282100

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019041
Physical Location & Seq
Forward (+)
30470218 .. 30471379
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG282100.1

Sequence Viewer

Length: 981 bp
ATGGAGCAGATTGATAATGATGATTACCTACTCTCAACTATTCTTGATGGCAATGACACACGGGGTTCTAACTCCCATAGCAATAGAGAACGGTCTTCCTCTGACTTAAGTCAGTTCGGTGTTTTCAGTAGTAATGGGATGGTCAAGGTAGACGAAGAGAGAACGACGAGTCGAGCAAGATTGGAGAGGTTTCGGAGTTTCTCTAAGGCAGTGGCTCGAAAGCATGGGGGCAATGCCAATATTGTGCCTGCTTGGTATGGTAGTTCCAGGGATGAGATATGTGAGATTTTGTTGAATGGGTTTAGTCTTAGAGAACCTACATCTAATGATGAACCTTATGGTGTTGATACCATTCATTTGGCTCCTCTGAATTGTTCTTTTGATGGTGCTTTATGTTCAGTTGCTGATGACAGTGGGCTAAGGCACATACTACTTTGTAGCGTCATTTTGGGGAAGACAGAATTGGTGTCCCCAAATTCGAAGCAAGCTCTTCCCAGCTCCAACAAGCTCGATTGTGGTGTGGATGATCCTGTGAACCTGAAAAGATACATCATATGGAGTGATTTCATGAACTCTCACATCTGTCCTCTGTATGTTGTAAGCTTCAAGGCTCCTCCTCCTCCTTGCTTAAGTCCCAAGTCTCCTGAAAAAATCAGTATCCCCAGCATCCCTAAACTTGCAAAGTCCTTACATCCTTCAAAAGTGGCTTCAATTGTTAAATGCATCAAGGAACTTCAAGGAAGTAAGATTAGGATGATGATCAGTTTTCCGGCCCATTGCTTAAAACCTCCAAGGATGAGTTTCCCTGCTACAAAGCTACGACAGTTCTTAAATCATTCTAGAATGGCATTGAGTGTTAAATGCAGCAAGGAACTTCGAGCAGGTATGGTTAGCGCCGCACGGTCAATACAAAAACCGAGGAAGATCAGTTTTTCAGCTCATTGCTTAAAACTACGACCCTCAACCTCCCCAAGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

326

Amino Acids

35.9

Weight (kDa)

9.37

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019041)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0213471
rosa_laevigata RLG00000002801
rosa_multiflora Rmu_co8493477.1_g000001
rosa_roxburghii Rroxscaffold_3G00245850
rosa_rugosa Rorug07G0142600
rosa_samantha Rh7AG274600 Rh7BG270100 Rh7CG293800 Rh7DG282100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 872
AccI GTMKAC 1 cut(s) 150
AciI CCGC 1 cut(s) 897
AclWI GGATC 1 cut(s) 521
AcsI RAATTY 1 cut(s) 475
AflII CTTAAG 2 cut(s) 106, 628
AgsI TTSAA 5 cut(s) 295, 607, 699, 711, 737
AjnI CCWGG 1 cut(s) 266
AjuI GAANNNNNNNTTGG 2 cut(s) 446, 478
AluBI AGCT 6 cut(s) 488, 498, 508, 603, 817, 938
AluI AGCT 6 cut(s) 488, 498, 508, 603, 817, 938
Alw26I GTCTC 1 cut(s) 645
AlwI GGATC 1 cut(s) 521
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 1 cut(s) 771
ApeKI GCWGC 1 cut(s) 864
ApoI RAATTY 1 cut(s) 475
AspLEI GCGC 1 cut(s) 896
AspS9I GGNCC 1 cut(s) 772
AsuII TTCGAA 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 87, 461
BbvI GCAGC 1 cut(s) 876
BccI CCATC 3 cut(s) 41, 133, 377
BciT130I CCWGG 1 cut(s) 268
BciVI GTATCC 1 cut(s) 668
BclI TGATCA 1 cut(s) 759
BcoDI GTCTC 1 cut(s) 645
BfaI CTAG 1 cut(s) 840
BfoI RGCGCY 1 cut(s) 897
BfrI CTTAAG 2 cut(s) 106, 628
BfuAI ACCTGC 1 cut(s) 872
BfuI GTATCC 1 cut(s) 668
BisI GCNGC 2 cut(s) 865, 897
BlsI GCNGC 2 cut(s) 866, 898
Bme1390I CCNGG 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 772
BmiI GGNNCC 2 cut(s) 363, 612
BmrFI CCNGG 1 cut(s) 268
BmsI GCATC 2 cut(s) 675, 732
BoxI GACNNNNGTC 1 cut(s) 108
BpiI GAAGAC 2 cut(s) 87, 461
Bpu10I CCTNAGC 1 cut(s) 419
Bpu14I TTCGAA 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 758
BsaJI CCNNGG 3 cut(s) 267, 791, 917
Bse3DI GCAATG 4 cut(s) 58, 238, 775, 940
Bse8I GATNNNNATC 1 cut(s) 758
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 3 cut(s) 267, 791, 917
BseGI GGATG 7 cut(s) 144, 277, 529, 666, 691, 759, 801
BseJI GATNNNNATC 1 cut(s) 758
BseMI GCAATG 4 cut(s) 58, 238, 775, 940
BseRI GAGGAG 4 cut(s) 354, 603, 606, 609
BseXI GCAGC 1 cut(s) 876
BseYI CCCAGC 2 cut(s) 494, 662
BshFI GGCC 1 cut(s) 773
BsiSI CCGG 1 cut(s) 770
BslFI GGGAC 2 cut(s) 454, 618
BsmAI GTCTC 1 cut(s) 645
BsmFI GGGAC 2 cut(s) 454, 618
BsnI GGCC 1 cut(s) 773
Bsp119I TTCGAA 1 cut(s) 479
Bsp143I GATC 3 cut(s) 526, 759, 924
BspACI CCGC 1 cut(s) 897
BspANI GGCC 1 cut(s) 773
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 2 cut(s) 363, 612
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 1 cut(s) 521
BspQI GCTCTTC 1 cut(s) 495
BspT104I TTCGAA 1 cut(s) 479
BspTI CTTAAG 2 cut(s) 106, 628
BsrDI GCAATG 4 cut(s) 58, 238, 775, 940
BssECI CCNNGG 3 cut(s) 267, 791, 917
BssMI GATC 3 cut(s) 526, 759, 924
BssT1I CCWWGG 1 cut(s) 791
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 4 cut(s) 93, 413, 825, 903
Bst6I CTCTTC 2 cut(s) 150, 495
BstAFI CTTAAG 2 cut(s) 106, 628
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 2 cut(s) 249, 486
BstDEI CTNAG 4 cut(s) 204, 308, 419, 978
BstF5I GGATG 7 cut(s) 144, 277, 529, 666, 691, 759, 801
BstH2I RGCGCY 1 cut(s) 897
BstHHI GCGC 1 cut(s) 896
BstKTI GATC 3 cut(s) 529, 762, 927
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 3 cut(s) 526, 759, 924
BstNI CCWGG 1 cut(s) 268
BstPAI GACNNNNGTC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 266
BstV1I GCAGC 1 cut(s) 876
BstV2I GAAGAC 2 cut(s) 87, 461
BstXI CCANNNNNNTGG 1 cut(s) 358
BsuI GTATCC 1 cut(s) 668
BsuRI GGCC 1 cut(s) 773
BtsCI GGATG 7 cut(s) 144, 277, 529, 666, 691, 759, 801
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 216, 418
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 2 cut(s) 249, 486
CaiI CAGNNNCTG 1 cut(s) 404
CciI TCATGA 1 cut(s) 567
CfoI GCGC 1 cut(s) 896
Cfr13I GGNCC 1 cut(s) 772
CseI GACGC 1 cut(s) 430
CviAII CATG 2 cut(s) 224, 568
DdeI CTNAG 4 cut(s) 204, 308, 419, 978
DpnI GATC 3 cut(s) 528, 761, 926
DpnII GATC 3 cut(s) 526, 759, 924
Eam1104I CTCTTC 2 cut(s) 150, 495
EarI CTCTTC 2 cut(s) 150, 495
Eco130I CCWWGG 1 cut(s) 791
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 791
EcoT22I ATGCAT 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 791
FaeI CATG 2 cut(s) 227, 571
FaqI GGGAC 2 cut(s) 454, 618
FatI CATG 2 cut(s) 223, 567
FauNDI CATATG 1 cut(s) 554
FbaI TGATCA 1 cut(s) 759
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 865, 897
FokI GGATG 7 cut(s) 151, 284, 536, 653, 678, 766, 808
Fsp4HI GCNGC 2 cut(s) 865, 897
FspBI CTAG 1 cut(s) 840
GlaI GCGC 1 cut(s) 895
GluI GCNGC 2 cut(s) 865, 897
GsaI CCCAGC 2 cut(s) 498, 666
HaeII RGCGCY 1 cut(s) 897
HaeIII GGCC 1 cut(s) 773
HapII CCGG 1 cut(s) 770
HgaI GACGC 1 cut(s) 430
HhaI GCGC 1 cut(s) 896
Hin1II CATG 2 cut(s) 227, 571
Hin6I GCGC 1 cut(s) 894
HinP1I GCGC 1 cut(s) 894
HindIII AAGCTT 1 cut(s) 601
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 770
Hpy166II GTNNAC 2 cut(s) 151, 535
Hpy188I TCNGA 3 cut(s) 103, 195, 369
Hpy188III TCNNGA 4 cut(s) 44, 568, 644, 840
Hpy8I GTNNAC 2 cut(s) 151, 535
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 705
HpyCH4III ACNGT 4 cut(s) 93, 413, 825, 903
HpyCH4V TGCA 3 cut(s) 680, 723, 864
HpyF3I CTNAG 4 cut(s) 204, 308, 419, 978
Hsp92II CATG 2 cut(s) 227, 571
HspAI GCGC 1 cut(s) 894
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 3 cut(s) 526, 759, 924
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 4 cut(s) 4, 367, 503, 616
Lsp1109I GCAGC 1 cut(s) 876
LweI GCATC 2 cut(s) 675, 732
MaeI CTAG 1 cut(s) 840
MalI GATC 3 cut(s) 528, 761, 926
MboI GATC 3 cut(s) 526, 759, 924
MboII GAAGA 5 cut(s) 87, 167, 466, 482, 934
MfeI CAATTG 1 cut(s) 711
MluCI AATT 4 cut(s) 370, 461, 475, 711
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 525
Mph1103I ATGCAT 1 cut(s) 725
MseI TTAA 7 cut(s) 107, 629, 717, 782, 830, 858, 947
MspCI CTTAAG 2 cut(s) 106, 628
MspI CCGG 1 cut(s) 770
MspR9I CCNGG 1 cut(s) 268
MunI CAATTG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 268
NdeI CATATG 1 cut(s) 554
NdeII GATC 3 cut(s) 526, 759, 924
NlaIII CATG 2 cut(s) 227, 571
NlaIV GGNNCC 2 cut(s) 363, 612
NsiI ATGCAT 1 cut(s) 725
NspV TTCGAA 1 cut(s) 479
PagI TCATGA 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 495
PkrI GCNGC 2 cut(s) 866, 898
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PshAI GACNNNNGTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 266
PspFI CCCAGC 2 cut(s) 494, 662
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 363, 612
PspPI GGNCC 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 404
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 7 cut(s) 107, 629, 717, 782, 830, 858, 947
SatI GCNGC 2 cut(s) 865, 897
Sau3AI GATC 3 cut(s) 526, 759, 924
Sau96I GGNCC 1 cut(s) 772
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 268
SfaNI GCATC 2 cut(s) 675, 732
SfuI TTCGAA 1 cut(s) 479
SmlI CTYRAG 2 cut(s) 106, 628
SmoI CTYRAG 2 cut(s) 106, 628
Sse9I AATT 4 cut(s) 370, 461, 475, 711
SsiI CCGC 1 cut(s) 897
SspI AATATT 1 cut(s) 241
SspMI CTAG 1 cut(s) 840
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 791
TaaI ACNGT 4 cut(s) 93, 413, 825, 903
TaqI TCGA 5 cut(s) 172, 217, 479, 510, 877
TasI AATT 4 cut(s) 370, 461, 475, 711
TauI GCSGC 1 cut(s) 899
Tru1I TTAA 7 cut(s) 107, 629, 717, 782, 830, 858, 947
Tru9I TTAA 7 cut(s) 107, 629, 717, 782, 830, 858, 947
TscAI CASTG 2 cut(s) 216, 418
TseI GCWGC 1 cut(s) 864
TspDTI ATGAA 4 cut(s) 344, 345, 556, 584
TspRI CASTG 2 cut(s) 216, 418
Vha464I CTTAAG 2 cut(s) 106, 628
XapI RAATTY 1 cut(s) 475
XbaI TCTAGA 1 cut(s) 839
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 840
Zsp2I ATGCAT 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.