Rh7BG270100

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0019041
Physical Location & Seq
Forward (+)
24767359 .. 24768208
850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG270100.1

Sequence Viewer

Length: 762 bp
ATGGTCAAGGTAGACGAAGAGAGTGAGGAGCATAAGTTGATAAAGATTTTCTTTGATTTGGGTATGGGAACAGAAGCCAATGTTGTGGCTGTACACAAGAATTTGTGCTCTGAAAGAACGACAAGTCGAGCAAGATTGGAGAGGTTTCGGAGTTTCTCCAAGGCAGTGGCTCGAAAGCATGGGGGCAATGCCAATATTGTGCCTGCTTGGTATGGTGGTTCCAGGGATGAGATATGTGAGATTTTGTTGAATGGGTTTAGTCTTAGAGAACCTACATCTAATGATGAACCTTACGGTGTTGATAGCATCCATTTGGCTCCTCTGCATTGTTCTTTTGATGGTGCTTTATGTTCAGTTGCTGATGACAGTGGGCTAAGGCACATACTACTTTGTAGCGTCATTTTGGGGAAGACAGAATTGGTGTCTCCAAATTCGAAGCAAGCTCTTCCCAGCTCCAATAAGCTCGATTGTGGTGTGGATGATCCTTTGAACCCGAGAAGATATATCATATGGAGTGATTTCATGAACTCTCACATCTGTCCTCTGTATGTTGTAAGCTTCAAGGCTCCTCCTCCTCCTTGCTTAAGTCCCAAGTCTCCTGAAAAAATGAGTATCCCCAGCATCCCTAAACTTGCAAAGTCCTTACCTCCGTCAAAAGTGGCTTCAATTGTTAAATGCATCAAGGAACTTCAAGGAAGTATGATTAGGATGATGATCAGTTTTCCAGCCCATTGCTTAAAACCTCCAAGTCTCCAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

253

Amino Acids

27.87

Weight (kDa)

8.65

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019041)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0213471
rosa_laevigata RLG00000002801
rosa_multiflora Rmu_co8493477.1_g000001
rosa_roxburghii Rroxscaffold_3G00245850
rosa_rugosa Rorug07G0142600
rosa_samantha Rh7AG274600 Rh7BG270100 Rh7CG293800 Rh7DG282100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 12
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 2 cut(s) 100, 430
AfaI GTAC 1 cut(s) 93
AflII CTTAAG 1 cut(s) 583
AgsI TTSAA 5 cut(s) 250, 490, 562, 666, 692
AjnI CCWGG 1 cut(s) 221
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 4 cut(s) 443, 453, 463, 558
AluI AGCT 4 cut(s) 443, 453, 463, 558
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 3 cut(s) 429, 600, 755
AlwI GGATC 1 cut(s) 476
AlwNI CAGNNNCTG 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 493
ApoI RAATTY 2 cut(s) 100, 430
AsuII TTCGAA 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 110
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 223
BciVI GTATCC 1 cut(s) 623
BclI TGATCA 1 cut(s) 714
BcoDI GTCTC 3 cut(s) 429, 600, 755
BfrI CTTAAG 1 cut(s) 583
BfuI GTATCC 1 cut(s) 623
Bme1390I CCNGG 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 493
BmiI GGNNCC 3 cut(s) 220, 318, 567
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 3 cut(s) 315, 630, 687
BpiI GAAGAC 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 159, 222
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse3DI GCAATG 2 cut(s) 193, 730
Bse8I GATNNNNATC 1 cut(s) 713
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 159, 222
BseGI GGATG 5 cut(s) 232, 306, 484, 621, 714
BseJI GATNNNNATC 1 cut(s) 713
BseMI GCAATG 2 cut(s) 193, 730
BseRI GAGGAG 5 cut(s) 41, 309, 558, 561, 564
BseYI CCCAGC 2 cut(s) 449, 617
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 493
BslFI GGGAC 1 cut(s) 573
BsmAI GTCTC 3 cut(s) 429, 600, 755
BsmFI GGGAC 1 cut(s) 573
BsoBI CYCGRG 1 cut(s) 493
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 2 cut(s) 481, 714
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 3 cut(s) 220, 318, 567
BspPI GGATC 1 cut(s) 476
BspQI GCTCTTC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 583
BsrDI GCAATG 2 cut(s) 193, 730
BsrGI TGTACA 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 159, 222
BssMI GATC 2 cut(s) 481, 714
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 296, 368
Bst6I CTCTTC 2 cut(s) 12, 450
BstAFI CTTAAG 1 cut(s) 583
BstAUI TGTACA 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 204, 441
BstDEI CTNAG 2 cut(s) 263, 374
BstF5I GGATG 5 cut(s) 232, 306, 484, 621, 714
BstKTI GATC 2 cut(s) 484, 717
BstMAI GTCTC 3 cut(s) 429, 600, 755
BstMBI GATC 2 cut(s) 481, 714
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 416
BstXI CCANNNNNNTGG 2 cut(s) 85, 166
BsuI GTATCC 1 cut(s) 623
BtsCI GGATG 5 cut(s) 232, 306, 484, 621, 714
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 373
Cac8I GCNNGC 2 cut(s) 204, 441
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 522
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 92
CviAII CATG 2 cut(s) 179, 523
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 2 cut(s) 263, 374
DpnI GATC 2 cut(s) 483, 716
DpnII GATC 2 cut(s) 481, 714
Eam1104I CTCTTC 2 cut(s) 12, 450
EarI CTCTTC 2 cut(s) 12, 450
Eco130I CCWWGG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 493
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 680
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 2 cut(s) 182, 526
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 1 cut(s) 573
FatI CATG 2 cut(s) 178, 522
FauNDI CATATG 1 cut(s) 509
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 1 cut(s) 12
FokI GGATG 5 cut(s) 239, 293, 491, 608, 721
GsaI CCCAGC 2 cut(s) 453, 621
HgaI GACGC 1 cut(s) 385
Hin1II CATG 2 cut(s) 182, 526
HindIII AAGCTT 1 cut(s) 556
Hpy166II GTNNAC 2 cut(s) 13, 94
Hpy188I TCNGA 2 cut(s) 112, 150
Hpy188III TCNNGA 2 cut(s) 523, 599
Hpy8I GTNNAC 2 cut(s) 13, 94
HpyCH4III ACNGT 2 cut(s) 296, 368
HpyCH4V TGCA 3 cut(s) 325, 635, 678
HpyF3I CTNAG 2 cut(s) 263, 374
Hsp92II CATG 2 cut(s) 182, 526
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 2 cut(s) 481, 714
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 4 cut(s) 28, 322, 458, 571
LpnPI CCDG 7 cut(s) 208, 216, 235, 463, 612, 631, 738
LweI GCATC 3 cut(s) 315, 630, 687
MalI GATC 2 cut(s) 483, 716
MboI GATC 2 cut(s) 481, 714
MboII GAAGA 4 cut(s) 29, 421, 437, 510
MfeI CAATTG 1 cut(s) 666
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 4 cut(s) 100, 416, 430, 666
MnlI CCTC 9 cut(s) 19, 135, 330, 552, 579, 582, 585, 657, 753
Mph1103I ATGCAT 1 cut(s) 680
MseI TTAA 3 cut(s) 584, 672, 737
MspCI CTTAAG 1 cut(s) 583
MspR9I CCNGG 1 cut(s) 223
MunI CAATTG 1 cut(s) 666
MvaI CCWGG 1 cut(s) 223
NdeI CATATG 1 cut(s) 509
NdeII GATC 2 cut(s) 481, 714
NlaIII CATG 2 cut(s) 182, 526
NlaIV GGNNCC 3 cut(s) 220, 318, 567
NsiI ATGCAT 1 cut(s) 680
NspV TTCGAA 1 cut(s) 434
PagI TCATGA 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 221
PspFI CCCAGC 2 cut(s) 449, 617
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 3 cut(s) 220, 318, 567
PstNI CAGNNNCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 3 cut(s) 584, 672, 737
Sau3AI GATC 2 cut(s) 481, 714
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 3 cut(s) 315, 630, 687
SfuI TTCGAA 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 583
SmoI CTYRAG 1 cut(s) 583
Sse9I AATT 4 cut(s) 100, 416, 430, 666
SspI AATATT 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 296, 368
TaqI TCGA 4 cut(s) 127, 172, 434, 465
TasI AATT 4 cut(s) 100, 416, 430, 666
TatI WGTACW 1 cut(s) 91
Tru1I TTAA 3 cut(s) 584, 672, 737
Tru9I TTAA 3 cut(s) 584, 672, 737
TscAI CASTG 2 cut(s) 171, 373
TspDTI ATGAA 3 cut(s) 300, 511, 539
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 2 cut(s) 171, 373
Vha464I CTTAAG 1 cut(s) 583
XapI RAATTY 2 cut(s) 100, 430
XmiI GTMKAC 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.