Rh7CG293800

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019041
Physical Location & Seq
Forward (+)
29993432 .. 29994518
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG293800.1

Sequence Viewer

Length: 996 bp
ATGGTCAAGGTAGATGAAGAGAGTGAGGAGCATAAGTTGATAAAGATTTTCTTTGATTTGGGTATGGGAACAGAAGCCAATGTTGTGGCTGTACACAAGAATTTGTGCTCTGAAGGAACGACAAGTCGAGCAAGATTGGAGAGGTTTCGGAGTTTCTCCAAGGCAGTGGCTCGAAAGCATGGGGGCAATGCCAATATTGCGCCTGCTTGGTATGGTAGTTCCAGGGATGAGATATGTGAGATCTTGTTGAATGGGTTTAGTCTCAGAGAACCTACATCTAATGATGAACCTTATGGTGTTGATACCATTCATTTGGCTCCTCTGAATTCTTCTTTTGATGGTGCTTTATGTTCAGTTGCTGATGACAGTGGACTAAGGCACATACTACTTTGTAGCGTCATTTTGGGGAAGACAGAATTGGTGTCCCCAAATTCGAAGCAAGCTCTTCCCAGCTCCAACAGGCTCGATTGTGGTGTGGATGATCCTGTGAACCCAAGAAGATATATCATATGGAGTGATTTCATGAACTCTCACATATGTCCTCTGTATGTTGTAAGCTTCAAGGCTCCTCCTCCTCCTCCTTGCTTAAGTCCCAAGTCTCCTCTAAAAATGAGTATCCCCAGTATCCATAAACTTGCAAAGTCCTTACATACTTCAAAAGTGGCTTCAATTGTTAAATGCATCAAGGAACTTCAAGGAAGTAAGATTAGGATGATCAGTTTTCTGGCCCATTGCTTAAAACCTCCAAGGATGAGTTTCCCTACTACAAAGCTACGAGAGTTCTTAAATCATTCTAGAATGGCATCGAGTGTTAAATGCAGCAAGGAACTTCGAGCAAGTATGGTTAGCGCCTCACAGTCAATACAAAAACCAAGGAAGATCAGTTTTTCAGCTCATTGCTTAAAACTACGACCCTCAGCCTCCCCAAGTTCTTCGATGTTTCTAAAATGGCTTCAATTGCTAAGTGCCACAAAGAGTTTCGACCAAACAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

331

Amino Acids

36.5

Weight (kDa)

9.46

Isoelectric Point (pI)

53.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019041)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0213471
rosa_laevigata RLG00000002801
rosa_multiflora Rmu_co8493477.1_g000001
rosa_roxburghii Rroxscaffold_3G00245850
rosa_rugosa Rorug07G0142600
rosa_samantha Rh7AG274600 Rh7BG270100 Rh7CG293800 Rh7DG282100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 3 cut(s) 100, 325, 430
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 1 cut(s) 93
AflII CTTAAG 1 cut(s) 586
AgsI TTSAA 6 cut(s) 250, 562, 657, 669, 695, 956
AjnI CCWGG 1 cut(s) 221
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 5 cut(s) 443, 453, 558, 772, 893
AluI AGCT 5 cut(s) 443, 453, 558, 772, 893
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 266, 603
AlwI GGATC 1 cut(s) 476
AlwNI CAGNNNCTG 1 cut(s) 359
AoxI GGCC 1 cut(s) 726
ApeKI GCWGC 1 cut(s) 819
ApoI RAATTY 3 cut(s) 100, 325, 430
AspLEI GCGC 2 cut(s) 202, 851
AspS9I GGNCC 1 cut(s) 727
AsuII TTCGAA 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 110
BbvCI CCTCAGC 1 cut(s) 916
BbvI GCAGC 1 cut(s) 831
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 223
BciVI GTATCC 2 cut(s) 626, 635
BclI TGATCA 1 cut(s) 714
BcoDI GTCTC 2 cut(s) 266, 603
BfaI CTAG 1 cut(s) 795
BfoI RGCGCY 1 cut(s) 852
BfrI CTTAAG 1 cut(s) 586
BfuI GTATCC 2 cut(s) 626, 635
BglII AGATCT 1 cut(s) 240
BisI GCNGC 1 cut(s) 820
BlsI GCNGC 1 cut(s) 821
Bme1390I CCNGG 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 727
BmiI GGNNCC 2 cut(s) 318, 567
BmrFI CCNGG 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 2 cut(s) 690, 812
BmuI ACTGGG 1 cut(s) 615
BpiI GAAGAC 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 916
Bpu14I TTCGAA 1 cut(s) 434
BsaJI CCNNGG 4 cut(s) 159, 222, 746, 872
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse1I ACTGG 1 cut(s) 621
Bse3DI GCAATG 3 cut(s) 193, 730, 895
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 4 cut(s) 159, 222, 746, 872
BseGI GGATG 4 cut(s) 232, 484, 717, 756
BseMI GCAATG 3 cut(s) 193, 730, 895
BseMII CTCAG 2 cut(s) 277, 930
BseNI ACTGG 1 cut(s) 621
BseRI GAGGAG 7 cut(s) 41, 309, 558, 561, 564, 567, 591
BseXI GCAGC 1 cut(s) 831
BseYI CCCAGC 1 cut(s) 449
BshFI GGCC 1 cut(s) 728
BsiHKAI GWGCWC 1 cut(s) 110
BslFI GGGAC 2 cut(s) 409, 576
BsmAI GTCTC 2 cut(s) 266, 603
BsmFI GGGAC 2 cut(s) 409, 576
BsnI GGCC 1 cut(s) 728
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 4 cut(s) 240, 481, 714, 879
BspANI GGCC 1 cut(s) 728
BspCNI CTCAG 2 cut(s) 276, 929
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 2 cut(s) 318, 567
BspPI GGATC 1 cut(s) 476
BspQI GCTCTTC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 434
BspTI CTTAAG 1 cut(s) 586
BsrDI GCAATG 3 cut(s) 193, 730, 895
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 1 cut(s) 621
BssECI CCNNGG 4 cut(s) 159, 222, 746, 872
BssMI GATC 4 cut(s) 240, 481, 714, 879
BssT1I CCWWGG 3 cut(s) 159, 746, 872
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 2 cut(s) 368, 858
Bst6I CTCTTC 2 cut(s) 12, 450
BstAFI CTTAAG 1 cut(s) 586
BstAUI TGTACA 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 204, 441
BstDEI CTNAG 4 cut(s) 263, 374, 916, 962
BstF5I GGATG 4 cut(s) 232, 484, 717, 756
BstH2I RGCGCY 1 cut(s) 852
BstHHI GCGC 2 cut(s) 202, 851
BstKTI GATC 4 cut(s) 243, 484, 717, 882
BstMAI GTCTC 2 cut(s) 266, 603
BstMBI GATC 4 cut(s) 240, 481, 714, 879
BstMWI GCNNNNNNNGC 2 cut(s) 197, 958
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 831
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 240
BstXI CCANNNNNNTGG 3 cut(s) 85, 166, 313
BstYI RGATCY 1 cut(s) 240
BsuI GTATCC 2 cut(s) 626, 635
BsuRI GGCC 1 cut(s) 728
BtsCI GGATG 4 cut(s) 232, 484, 717, 756
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 373
Cac8I GCNNGC 2 cut(s) 204, 441
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 522
CfoI GCGC 2 cut(s) 202, 851
Cfr13I GGNCC 1 cut(s) 727
CseI GACGC 1 cut(s) 385
Csp6I GTAC 1 cut(s) 92
CviAII CATG 2 cut(s) 179, 523
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 4 cut(s) 263, 374, 916, 962
DpnI GATC 4 cut(s) 242, 483, 716, 881
DpnII GATC 4 cut(s) 240, 481, 714, 879
Eam1104I CTCTTC 2 cut(s) 12, 450
EarI CTCTTC 2 cut(s) 12, 450
Eco130I CCWWGG 3 cut(s) 159, 746, 872
Eco57I CTGAAG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 3 cut(s) 159, 746, 872
EcoT22I ATGCAT 1 cut(s) 683
ErhI CCWWGG 3 cut(s) 159, 746, 872
FaeI CATG 2 cut(s) 182, 526
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 2 cut(s) 409, 576
FatI CATG 2 cut(s) 178, 522
FauNDI CATATG 2 cut(s) 509, 536
FbaI TGATCA 1 cut(s) 714
Fnu4HI GCNGC 1 cut(s) 820
FokI GGATG 4 cut(s) 239, 491, 724, 763
Fsp4HI GCNGC 1 cut(s) 820
FspBI CTAG 1 cut(s) 795
GlaI GCGC 2 cut(s) 201, 850
GluI GCNGC 1 cut(s) 820
GsaI CCCAGC 1 cut(s) 453
HaeII RGCGCY 1 cut(s) 852
HaeIII GGCC 1 cut(s) 728
HgaI GACGC 1 cut(s) 385
HhaI GCGC 2 cut(s) 202, 851
Hin1II CATG 2 cut(s) 182, 526
Hin6I GCGC 2 cut(s) 200, 849
HinP1I GCGC 2 cut(s) 200, 849
HindIII AAGCTT 1 cut(s) 556
Hpy166II GTNNAC 3 cut(s) 94, 371, 490
Hpy188I TCNGA 4 cut(s) 112, 150, 266, 324
Hpy188III TCNNGA 2 cut(s) 523, 795
Hpy8I GTNNAC 3 cut(s) 94, 371, 490
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 2 cut(s) 368, 858
HpyCH4V TGCA 3 cut(s) 638, 681, 819
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 958
HpyF3I CTNAG 4 cut(s) 263, 374, 916, 962
Hsp92II CATG 2 cut(s) 182, 526
HspAI GCGC 2 cut(s) 200, 849
Ksp22I TGATCA 1 cut(s) 714
Kzo9I GATC 4 cut(s) 240, 481, 714, 879
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 4 cut(s) 28, 322, 458, 571
LpnPI CCDG 9 cut(s) 208, 216, 235, 445, 463, 498, 634, 710, 975
Lsp1109I GCAGC 1 cut(s) 831
LweI GCATC 2 cut(s) 690, 812
MaeI CTAG 1 cut(s) 795
MalI GATC 4 cut(s) 242, 483, 716, 881
MboI GATC 4 cut(s) 240, 481, 714, 879
MboII GAAGA 7 cut(s) 29, 321, 421, 437, 510, 889, 924
MfeI CAATTG 2 cut(s) 669, 956
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 6 cut(s) 100, 325, 416, 430, 669, 956
MmeI TCCRAC 1 cut(s) 480
Mph1103I ATGCAT 1 cut(s) 683
MseI TTAA 6 cut(s) 587, 675, 737, 785, 813, 902
MspCI CTTAAG 1 cut(s) 586
MspR9I CCNGG 1 cut(s) 223
MunI CAATTG 2 cut(s) 669, 956
MvaI CCWGG 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 197, 958
NdeI CATATG 2 cut(s) 509, 536
NdeII GATC 4 cut(s) 240, 481, 714, 879
NlaIII CATG 2 cut(s) 182, 526
NlaIV GGNNCC 2 cut(s) 318, 567
NsiI ATGCAT 1 cut(s) 683
NspV TTCGAA 1 cut(s) 434
PagI TCATGA 1 cut(s) 522
PciSI GCTCTTC 1 cut(s) 450
PkrI GCNGC 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 318, 567
PspPI GGNCC 1 cut(s) 727
PstNI CAGNNNCTG 1 cut(s) 359
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 6 cut(s) 587, 675, 737, 785, 813, 902
SatI GCNGC 1 cut(s) 820
Sau3AI GATC 4 cut(s) 240, 481, 714, 879
Sau96I GGNCC 1 cut(s) 727
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 2 cut(s) 690, 812
SfuI TTCGAA 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
Sse9I AATT 6 cut(s) 100, 325, 416, 430, 669, 956
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 795
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 3 cut(s) 159, 746, 872
TaaI ACNGT 2 cut(s) 368, 858
TaqI TCGA 8 cut(s) 127, 172, 434, 465, 806, 832, 935, 981
TasI AATT 6 cut(s) 100, 325, 416, 430, 669, 956
TatI WGTACW 1 cut(s) 91
Tru1I TTAA 6 cut(s) 587, 675, 737, 785, 813, 902
Tru9I TTAA 6 cut(s) 587, 675, 737, 785, 813, 902
TscAI CASTG 2 cut(s) 171, 373
TseI GCWGC 1 cut(s) 819
TspDTI ATGAA 5 cut(s) 30, 299, 300, 511, 539
TspRI CASTG 2 cut(s) 171, 373
Vha464I CTTAAG 1 cut(s) 586
XapI RAATTY 3 cut(s) 100, 325, 430
XbaI TCTAGA 1 cut(s) 794
XspI CTAG 1 cut(s) 795
Zsp2I ATGCAT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.