Rroxscaffold_3G00245850

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019041
Physical Location & Seq
Reverse (-)
38950371 .. 38951434
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245850.1

Sequence Viewer

Length: 975 bp
ATGGAGCAGATTGATAATGATGATTACCTACTCTCAACTATTCTTGATGGCAATGACACACAGGGTTCTAACTCCCATAGCAATAGAGCGCGGTCTTCCTCTGACTTAAGTCAGTTCGGTGTTTTCAGTAGTAATGGGATGGTCAAGGTAGATGAAGAGAGTGAGGAGCATAAGTTGATAAAGATTTTCTTTGATTTGGGTATGGGAACAGAAGCCAATGTTGTGGCTGTACACAAGAATTTGTGCTCTGAAAGAACGACAAGTCGAGCAAGATTGGAGAGGTTTCGGAGTTTCTCCAAGGCAGTGGCTCGAAAGCATGGGGGCAATGCCAATATTGTGCCTGCTTGGTATGGTGGTTCCAGGGATGAGATATGTGAGATTTTGTTGAATGGGTTTAGTCTTAGAGAACCTACATCTAATGATGAACCTTACGGTGTTGAAAGCATCCATTTGGCTCCTCTGAATTGTTCTTTTGATGGTGCTTTATGTTCAGTTGCTGATGACAGTGGACTAAGGCACATACTACTTTGTAGCGTCATTTTGGGGAAGACAGAATTGGTGTCCCCAAATTCGAAGCAAGCTCTTCCCAGCTCCAACAAGCTCGATTGTGGTGTGGATGATCCTGTGAACCCAAGAAGATATATCATATGGAGTGATTTCATGAACTCTCACATCTGTCCTCTGTATGTTGTAAGCTTCAAGGCTCCTCCTCCTCCTCCTTGCTTAAGTCCCAAGTCTCCTGAAAAAATGAGTATCCCCAGTATCCCTAAACTTGCAAAGTCCTTACATACTTCAAAAGTGGCTTCAATTGTTAAATGCATCAAGGAACTTCAAGGAAGTAAGATTAGGATGATGATCAGTTTTCTGGCCCATTGCTTAAAACCTCCAAGGATGAGTTTCCCTACTACAAAGCTACGAGAGTTCTTAAATCATTCTAGAATGGCATCGAGTGTTAAATGCAGCAAGGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

324

Amino Acids

35.74

Weight (kDa)

8.43

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019041)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0213471
rosa_laevigata RLG00000002801
rosa_multiflora Rmu_co8493477.1_g000001
rosa_roxburghii Rroxscaffold_3G00245850
rosa_rugosa Rorug07G0142600
rosa_samantha Rh7AG274600 Rh7BG270100 Rh7CG293800 Rh7DG282100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 91
AciI CCGC 1 cut(s) 91
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 2 cut(s) 238, 568
AfaI GTAC 1 cut(s) 231
AflII CTTAAG 2 cut(s) 106, 724
AgsI TTSAA 6 cut(s) 388, 440, 700, 795, 807, 833
AjnI CCWGG 1 cut(s) 359
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AluBI AGCT 5 cut(s) 581, 591, 601, 696, 913
AluI AGCT 5 cut(s) 581, 591, 601, 696, 913
Alw21I GWGCWC 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 741
AlwI GGATC 1 cut(s) 614
AlwNI CAGNNNCTG 1 cut(s) 497
AoxI GGCC 1 cut(s) 867
ApeKI GCWGC 1 cut(s) 960
ApoI RAATTY 2 cut(s) 238, 568
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 868
AsuII TTCGAA 1 cut(s) 572
BbsI GAAGAC 2 cut(s) 87, 554
Bbv12I GWGCWC 1 cut(s) 248
BccI CCATC 3 cut(s) 41, 133, 470
BciT130I CCWGG 1 cut(s) 361
BciVI GTATCC 2 cut(s) 764, 773
BclI TGATCA 1 cut(s) 855
BcoDI GTCTC 1 cut(s) 741
BfaI CTAG 1 cut(s) 936
BfrI CTTAAG 2 cut(s) 106, 724
BfuI GTATCC 2 cut(s) 764, 773
BisI GCNGC 1 cut(s) 961
BlsI GCNGC 1 cut(s) 962
Bme1390I CCNGG 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 868
BmiI GGNNCC 3 cut(s) 358, 456, 705
BmrFI CCNGG 1 cut(s) 361
BmrI ACTGGG 1 cut(s) 753
BmsI GCATC 3 cut(s) 453, 828, 953
BmuI ACTGGG 1 cut(s) 753
BoxI GACNNNNGTC 1 cut(s) 108
BpiI GAAGAC 2 cut(s) 87, 554
Bpu14I TTCGAA 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 854
BsaJI CCNNGG 3 cut(s) 297, 360, 887
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bse1I ACTGG 1 cut(s) 759
Bse3DI GCAATG 3 cut(s) 58, 331, 871
Bse8I GATNNNNATC 1 cut(s) 854
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 3 cut(s) 297, 360, 887
BseGI GGATG 6 cut(s) 144, 370, 444, 622, 855, 897
BseJI GATNNNNATC 1 cut(s) 854
BseMI GCAATG 3 cut(s) 58, 331, 871
BseNI ACTGG 1 cut(s) 759
BseRI GAGGAG 6 cut(s) 179, 447, 696, 699, 702, 705
BseYI CCCAGC 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 869
BsiHKAI GWGCWC 1 cut(s) 248
BslFI GGGAC 2 cut(s) 547, 714
BsmAI GTCTC 1 cut(s) 741
BsmFI GGGAC 2 cut(s) 547, 714
BsnI GGCC 1 cut(s) 869
Bsp119I TTCGAA 1 cut(s) 572
Bsp1286I GDGCHC 1 cut(s) 248
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 2 cut(s) 619, 855
BspACI CCGC 1 cut(s) 91
BspANI GGCC 1 cut(s) 869
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 3 cut(s) 358, 456, 705
BspPI GGATC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 588
BspT104I TTCGAA 1 cut(s) 572
BspTI CTTAAG 2 cut(s) 106, 724
BsrDI GCAATG 3 cut(s) 58, 331, 871
BsrGI TGTACA 1 cut(s) 229
BsrI ACTGG 1 cut(s) 759
BssECI CCNNGG 3 cut(s) 297, 360, 887
BssMI GATC 2 cut(s) 619, 855
BssT1I CCWWGG 2 cut(s) 297, 887
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 434, 506
Bst6I CTCTTC 2 cut(s) 150, 588
BstAFI CTTAAG 2 cut(s) 106, 724
BstAUI TGTACA 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 342, 579
BstDEI CTNAG 2 cut(s) 401, 512
BstF5I GGATG 6 cut(s) 144, 370, 444, 622, 855, 897
BstFNI CGCG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 2 cut(s) 622, 858
BstMAI GTCTC 1 cut(s) 741
BstMBI GATC 2 cut(s) 619, 855
BstNI CCWGG 1 cut(s) 361
BstPAI GACNNNNGTC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 359
BstUI CGCG 1 cut(s) 91
BstV2I GAAGAC 2 cut(s) 87, 554
BstXI CCANNNNNNTGG 2 cut(s) 223, 304
BsuI GTATCC 2 cut(s) 764, 773
BsuRI GGCC 1 cut(s) 869
BtsCI GGATG 6 cut(s) 144, 370, 444, 622, 855, 897
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 2 cut(s) 309, 511
Cac8I GCNNGC 2 cut(s) 342, 579
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 660
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 868
CseI GACGC 1 cut(s) 523
Csp6I GTAC 1 cut(s) 230
CviAII CATG 2 cut(s) 317, 661
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 2 cut(s) 401, 512
DpnI GATC 2 cut(s) 621, 857
DpnII GATC 2 cut(s) 619, 855
Eam1104I CTCTTC 2 cut(s) 150, 588
EarI CTCTTC 2 cut(s) 150, 588
Eco130I CCWWGG 2 cut(s) 297, 887
EcoRII CCWGG 1 cut(s) 359
EcoT14I CCWWGG 2 cut(s) 297, 887
EcoT22I ATGCAT 1 cut(s) 821
ErhI CCWWGG 2 cut(s) 297, 887
FaeI CATG 2 cut(s) 320, 664
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 2 cut(s) 547, 714
FatI CATG 2 cut(s) 316, 660
FauNDI CATATG 1 cut(s) 647
FbaI TGATCA 1 cut(s) 855
Fnu4HI GCNGC 1 cut(s) 961
FokI GGATG 6 cut(s) 151, 377, 431, 629, 862, 904
Fsp4HI GCNGC 1 cut(s) 961
FspBI CTAG 1 cut(s) 936
GlaI GCGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 961
GsaI CCCAGC 1 cut(s) 591
HaeIII GGCC 1 cut(s) 869
HgaI GACGC 1 cut(s) 523
HhaI GCGC 1 cut(s) 91
Hin1II CATG 2 cut(s) 320, 664
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 694
Hpy166II GTNNAC 3 cut(s) 232, 509, 628
Hpy188I TCNGA 4 cut(s) 103, 250, 288, 462
Hpy188III TCNNGA 4 cut(s) 44, 661, 740, 936
Hpy8I GTNNAC 3 cut(s) 232, 509, 628
HpyCH4III ACNGT 2 cut(s) 434, 506
HpyCH4V TGCA 3 cut(s) 776, 819, 960
HpyF3I CTNAG 2 cut(s) 401, 512
Hsp92II CATG 2 cut(s) 320, 664
HspAI GCGC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 855
Kzo9I GATC 2 cut(s) 619, 855
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 5 cut(s) 4, 166, 460, 596, 709
LpnPI CCDG 9 cut(s) 47, 346, 354, 373, 601, 636, 753, 772, 851
LweI GCATC 3 cut(s) 453, 828, 953
MaeI CTAG 1 cut(s) 936
MalI GATC 2 cut(s) 621, 857
MboI GATC 2 cut(s) 619, 855
MboII GAAGA 5 cut(s) 87, 167, 559, 575, 648
MfeI CAATTG 1 cut(s) 807
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 5 cut(s) 238, 463, 554, 568, 807
MmeI TCCRAC 1 cut(s) 618
Mph1103I ATGCAT 1 cut(s) 821
MseI TTAA 6 cut(s) 107, 725, 813, 878, 926, 954
MspCI CTTAAG 2 cut(s) 106, 724
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 807
MvaI CCWGG 1 cut(s) 361
MvnI CGCG 1 cut(s) 91
NdeI CATATG 1 cut(s) 647
NdeII GATC 2 cut(s) 619, 855
NlaIII CATG 2 cut(s) 320, 664
NlaIV GGNNCC 3 cut(s) 358, 456, 705
NsiI ATGCAT 1 cut(s) 821
NspV TTCGAA 1 cut(s) 572
PagI TCATGA 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 588
PkrI GCNGC 1 cut(s) 962
PshAI GACNNNNGTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 3 cut(s) 358, 456, 705
PspPI GGNCC 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 6 cut(s) 107, 725, 813, 878, 926, 954
SatI GCNGC 1 cut(s) 961
Sau3AI GATC 2 cut(s) 619, 855
Sau96I GGNCC 1 cut(s) 868
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 248
SfaNI GCATC 3 cut(s) 453, 828, 953
SfuI TTCGAA 1 cut(s) 572
SmlI CTYRAG 2 cut(s) 106, 724
SmoI CTYRAG 2 cut(s) 106, 724
Sse9I AATT 5 cut(s) 238, 463, 554, 568, 807
SsiI CCGC 1 cut(s) 91
SspI AATATT 1 cut(s) 334
SspMI CTAG 1 cut(s) 936
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 2 cut(s) 297, 887
TaaI ACNGT 2 cut(s) 434, 506
TaqI TCGA 5 cut(s) 265, 310, 572, 603, 947
TasI AATT 5 cut(s) 238, 463, 554, 568, 807
TatI WGTACW 1 cut(s) 229
Tru1I TTAA 6 cut(s) 107, 725, 813, 878, 926, 954
Tru9I TTAA 6 cut(s) 107, 725, 813, 878, 926, 954
TscAI CASTG 2 cut(s) 309, 511
TseI GCWGC 1 cut(s) 960
TspDTI ATGAA 4 cut(s) 168, 438, 649, 677
TspRI CASTG 2 cut(s) 309, 511
Vha464I CTTAAG 2 cut(s) 106, 724
XapI RAATTY 2 cut(s) 238, 568
XbaI TCTAGA 1 cut(s) 935
XspI CTAG 1 cut(s) 936
Zsp2I ATGCAT 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.