Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495669.1

Orthogroup ID

OG0010476

Physical Location & Seq

Genomic Coordinates Reverse (-)

92 .. 2524

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495669.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgaagcgcaaagaacagcttcagaggcatatgaggaagtgtgatctcaagcatcctcctggtgatgagatataccggaatcatacgctttctatgttcgaggttgatggtaaaaagaacaaggtttatggacagaatctttgttatttggcaaagctgtttcttgatcacaagaccctgtattatgatgttgacctttttctattttacattctatgtgaatgtgatgatcggggatgccatatggtcggatatttttcaaaggaaaagcattcggaggagtcctataacttggcatgtatccttacccttcctccttatcaaagaaaaggctatggaaaatttttaattgccttttcatatgaactatccaagaaagaaggtaaagttggtacgcccgagaggccgctctctgatctaggactcttgagttaccgaggatactggactcgggtgcttctagacatcttgaaaaagcataagggaaatatttccatcaaggagctcagtgacatgactgccatcaaggcagaggatattttgaccactcttcagagtctagaattaattcagtacaggaaagggcagcatgtcatctgtgctgatccaaaagtcctggaccgtcatcttaaagcagctggtcctgctggtctggaggttgatgtcggcaaattgatctggacgccgtataaagagcaaggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0033554 GO:0034212 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0043995 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051276 GO:0051716 GO:0061733 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOZ_SAS Tudor-knot

Protein Analysis

234

Amino Acids

27.11

Weight (kDa)

8.89

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09740 AT5G09740 AT5G64610
fragaria_vesca	FvH4_5g38850
malus_domestica	MD08G1173300.v1.1 MD15G1358600.v1.1
prunus_persica	Prupe.1G506200_v2.0.a1 Prupe.1G506200_v2.0.a1
pyrus_communis	pycom08g14790 pycom15g32100
rosa_chinensis	RchiOBHm_Chr7g0240841
rosa_laevigata	RLG00000000621
rosa_multiflora	Rmu_co8495669.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219580
rosa_rugosa	Rorug07G0339400
rosa_samantha	Rh7AG493800 Rh7BG465700 Rh7CG512200 Rh7DG478900
rosa_wichuraiana	Rw0G010710 Rw7G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	409
AciI	CCGC	1 cut(s)	407
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	5, 536
AcyI	GRCGYC	1 cut(s)	683
AfaI	GTAC	2 cut(s)	394, 575
AgsI	TTSAA	2 cut(s)	261, 472
AjnI	CCWGG	2 cut(s)	58, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AluBI	AGCT	4 cut(s)	19, 157, 505, 638
AluI	AGCT	4 cut(s)	19, 157, 505, 638
Alw21I	GWGCWC	1 cut(s)	507
AlwI	GGATC	1 cut(s)	599
Ama87I	CYCGRG	2 cut(s)	398, 450
AoxI	GGCC	1 cut(s)	404
ApeKI	GCWGC	2 cut(s)	586, 635
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AseI	ATTAAT	1 cut(s)	566
Asp700I	GAANNNNTTC	3 cut(s)	18, 490, 567
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	619, 641
AsuHPI	GGTGA	1 cut(s)	74
AvaI	CYCGRG	2 cut(s)	398, 450
AvaII	GGWCC	2 cut(s)	619, 641
BanII	GRGCYC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	598, 647
BccI	CCATC	3 cut(s)	101, 503, 530
BceAI	ACGGC	1 cut(s)	670
BciT130I	CCWGG	2 cut(s)	60, 617
BciVI	GTATCC	2 cut(s)	311, 434
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	3 cut(s)	419, 461, 560
BfuI	GTATCC	2 cut(s)	311, 434
BglI	GCCNNNNNGGC	2 cut(s)	403, 527
BisI	GCNGC	3 cut(s)	407, 587, 636
BlsI	GCNGC	3 cut(s)	408, 588, 637
Bme1390I	CCNGG	2 cut(s)	60, 617
Bme18I	GGWCC	2 cut(s)	619, 641
BmeT110I	CYCGRG	2 cut(s)	398, 450
BmgT120I	GGNCC	2 cut(s)	619, 641
BmrFI	CCNGG	2 cut(s)	60, 617
BmsI	GCATC	2 cut(s)	61, 227
BpmI	CTGGAG	1 cut(s)	674
BpuEI	CTTGAG	2 cut(s)	32, 448
BsaHI	GRCGYC	1 cut(s)	683
BsaJI	CCNNGG	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bse1I	ACTGG	1 cut(s)	449
BseBI	CCWGG	2 cut(s)	60, 617
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	2 cut(s)	52, 242
BseMII	CTCAG	1 cut(s)	520
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	598, 647
BshFI	GGCC	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	507
BsiHKCI	CYCGRG	2 cut(s)	398, 450
BsiSI	CCGG	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	406
BsoBI	CYCGRG	2 cut(s)	398, 450
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	6 cut(s)	43, 166, 229, 415, 604, 675
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	1 cut(s)	519
BspPI	GGATC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	6 cut(s)	43, 166, 229, 415, 604, 675
BssNI	GRCGYC	1 cut(s)	683
Bst2UI	CCWGG	2 cut(s)	60, 617
Bst4CI	ACNGT	1 cut(s)	623
Bst6I	CTCTTC	1 cut(s)	555
BstACI	GRCGYC	1 cut(s)	683
BstDEI	CTNAG	1 cut(s)	506
BstF5I	GGATG	2 cut(s)	52, 242
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	6 cut(s)	46, 169, 232, 418, 607, 678
BstMBI	GATC	6 cut(s)	43, 166, 229, 415, 604, 675
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 403, 527, 644
BstNI	CCWGG	2 cut(s)	60, 617
BstNSI	RCATGY	2 cut(s)	300, 593
BstSCI	CCNGG	2 cut(s)	58, 615
BstV1I	GCAGC	2 cut(s)	598, 647
BsuI	GTATCC	2 cut(s)	311, 434
BsuRI	GGCC	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	52, 242
BtsIMutI	CAGTG	1 cut(s)	514
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	619, 641
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	2 cut(s)	393, 574
CviAII	CATG	3 cut(s)	297, 514, 590
CviJI	RGCY	7 cut(s)	19, 157, 333, 406, 505, 638, 702
CviKI_1	RGCY	7 cut(s)	19, 157, 333, 406, 505, 638, 702
CviQI	GTAC	2 cut(s)	393, 574
DdeI	CTNAG	1 cut(s)	506
DpnI	GATC	6 cut(s)	45, 168, 231, 417, 606, 677
DpnII	GATC	6 cut(s)	43, 166, 229, 415, 604, 675
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	507
Eco47I	GGWCC	2 cut(s)	619, 641
Eco53kI	GAGCTC	1 cut(s)	505
Eco57I	CTGAAG	2 cut(s)	5, 536
Eco88I	CYCGRG	2 cut(s)	398, 450
EcoICRI	GAGCTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	58, 615
EcoT38I	GRGCYC	1 cut(s)	507
FaeI	CATG	3 cut(s)	300, 517, 593
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	3 cut(s)	296, 513, 589
FauNDI	CATATG	3 cut(s)	30, 243, 361
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	407, 587, 636
FokI	GGATG	2 cut(s)	39, 249
FriOI	GRGCYC	1 cut(s)	507
Fsp4HI	GCNGC	3 cut(s)	407, 587, 636
FspBI	CTAG	3 cut(s)	419, 461, 560
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	407, 587, 636
GsuI	CTGGAG	1 cut(s)	674
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	1 cut(s)	76
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	683
Hin1II	CATG	3 cut(s)	300, 517, 593
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	6 cut(s)	79, 136, 281, 423, 448, 556
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	5 cut(s)	24, 251, 277, 415, 555
Hpy188III	TCNNGA	7 cut(s)	164, 427, 461, 469, 560, 653, 679
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	320, 374
HpyCH4III	ACNGT	1 cut(s)	623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 403, 527, 644
HpyF3I	CTNAG	1 cut(s)	506
Hsp92I	GRCGYC	1 cut(s)	683
Hsp92II	CATG	3 cut(s)	300, 517, 593
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	6 cut(s)	43, 166, 229, 415, 604, 675
LmnI	GCTCC	1 cut(s)	502
Lsp1109I	GCAGC	2 cut(s)	598, 647
LweI	GCATC	2 cut(s)	61, 227
MaeI	CTAG	3 cut(s)	419, 461, 560
MaeIII	GTNAC	2 cut(s)	431, 509
MalI	GATC	6 cut(s)	45, 168, 231, 417, 606, 677
MbiI	CCGCTC	1 cut(s)	409
MboI	GATC	6 cut(s)	43, 166, 229, 415, 604, 675
MboII	GAAGA	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	5 cut(s)	341, 348, 563, 567, 671
MlyI	GAGTC	4 cut(s)	290, 417, 442, 565
MmeI	TCCRAC	1 cut(s)	229
MroXI	GAANNNNTTC	3 cut(s)	18, 490, 567
MseI	TTAA	3 cut(s)	347, 566, 630
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	60, 617
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	60, 617
MwoI	GCNNNNNNNGC	4 cut(s)	25, 403, 527, 644
NdeI	CATATG	3 cut(s)	30, 243, 361
NdeII	GATC	6 cut(s)	43, 166, 229, 415, 604, 675
NlaIII	CATG	3 cut(s)	300, 517, 593
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	2 cut(s)	300, 593
PctI	GAATGC	1 cut(s)	271
PdmI	GAANNNNTTC	3 cut(s)	18, 490, 567
PfeI	GAWTC	2 cut(s)	79, 136
PfoI	TCCNGGA	1 cut(s)	615
PkrI	GCNGC	3 cut(s)	408, 588, 637
PleI	GAGTC	4 cut(s)	289, 417, 442, 564
PpsI	GAGTC	4 cut(s)	289, 417, 442, 564
PshBI	ATTAAT	1 cut(s)	566
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	58, 615
PspGI	CCWGG	2 cut(s)	58, 615
PspPI	GGNCC	2 cut(s)	619, 641
PvuII	CAGCTG	1 cut(s)	638
RsaI	GTAC	2 cut(s)	394, 575
RsaNI	GTAC	2 cut(s)	393, 574
SacI	GAGCTC	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	347, 566, 630
SatI	GCNGC	3 cut(s)	407, 587, 636
Sau3AI	GATC	6 cut(s)	43, 166, 229, 415, 604, 675
Sau96I	GGNCC	2 cut(s)	619, 641
SchI	GAGTC	4 cut(s)	290, 417, 442, 565
ScrFI	CCNGG	2 cut(s)	60, 617
SduI	GDGCHC	1 cut(s)	507
SetI	ASST	9 cut(s)	21, 105, 126, 159, 198, 385, 507, 640, 660
SfaNI	GCATC	2 cut(s)	61, 227
SinI	GGWCC	2 cut(s)	619, 641
SmlI	CTYRAG	2 cut(s)	47, 427
SmoI	CTYRAG	2 cut(s)	47, 427
Sse9I	AATT	5 cut(s)	341, 348, 563, 567, 671
SsiI	CCGC	1 cut(s)	407
SspI	AATATT	1 cut(s)	490
SspMI	CTAG	3 cut(s)	419, 461, 560
SstI	GAGCTC	1 cut(s)	507
StyD4I	CCNGG	2 cut(s)	58, 615
TaaI	ACNGT	1 cut(s)	623
TaqI	TCGA	1 cut(s)	99
TasI	AATT	5 cut(s)	341, 348, 563, 567, 671
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	1 cut(s)	409
TfiI	GAWTC	2 cut(s)	79, 136
Tru1I	TTAA	3 cut(s)	347, 566, 630
Tru9I	TTAA	3 cut(s)	347, 566, 630
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	2 cut(s)	586, 635
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	3 cut(s)	17, 348, 378
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	619, 641
VspI	ATTAAT	1 cut(s)	566
XapI	RAATTY	1 cut(s)	341
XbaI	TCTAGA	2 cut(s)	460, 559
XceI	RCATGY	2 cut(s)	300, 593
XmnI	GAANNNNTTC	3 cut(s)	18, 490, 567
XspI	CTAG	3 cut(s)	419, 461, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.