Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010476

Physical Location & Seq

Genomic Coordinates Reverse (-)

68418397 .. 68423337

Gene Structure 4941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG478900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGTTCGATAGGCACATCTCCGGTTGCGGAAAACGGTTCTGATACTCCCAACGGCGCCGCCGTCACATACGACGGCGAGAACAAGCCTCACTCCGGCGATGGCTATCCTCCATTGGCCTCCGAGACGACGCCGGAGTCGGAAGCGTCGAAGAAGCGGAGGATGTCCATGCTTCCTTTGGAGGTCGGCACGAGTGTAATGTGTCGTTGGAGAGACTCCAAGTACCATCCCGTCAAGGTTATCGAACGCCGGAGGGTTCACGGCGGCGGGCCCAACGATTACGAGTATTACGTCCACTACACCGAGTTCAATAGGAGGCTTGATGAGTGGGTGAAACTTGATCAACTTGATCTTGATTCAGTAGAGGCTGTCGTTGATGAGAAAGTGGAGGACAAGGTTACAAGCTTGAAAATGACTCGCCATCAGAAGCGGAAGATTGATGAGACACATGTGGAGGGGCATGAGGAACTTGATGCTGCCAGCTTACGCGAACATGAAGAATTTACAAAAGTGAAAAATATAGCGACTATAGAACTTGGAAGATATGAGATTGAGACATGGTACTTCTCCCCCTTTCCACCAGAATATAATGACTCTTTGAAGCTGTACTTTTGTGAGTTTTGTCTCAATTTCATGAAGCGCAAAGAACAGCTTCAGAGGCATATGAGGAAGTGTGATCTCAAGCATCCTCCTGGTGATGAGATATACCGGAATCATACGCTTTCTATGTTCGAGGTTGATGGTAAAAAGAACAAGGTTTATGGACAGAATCTTTGTTATTTGGCAAAGCTGTTTCTTGATCACAAGACCCTGTATTATGATGTTGACCTCTTTCTATTTTACATTCTATGTGAATGTGATGATCGGGGATGCCATATGGTCGGATATTTTTCAAAGGTAATGTGTTCGTTGTCATTGCTGTTTTACTGCCATACATACAAGGATATTTGTTTTAGCTACTGTGTATCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0033554 GO:0034212 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0043995 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051276 GO:0051716 GO:0061733 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MOZ_SAS Tudor-knot

Protein Analysis

324

Amino Acids

37.82

Weight (kDa)

5.89

Isoelectric Point (pI)

49.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tudor-knot	PF11717	60 - 118	1e-20	RNA binding activity-knot of a chromodomain
zf-MYST	PF17772	171 - 225	2.5e-25	MYST family zinc finger domain
MOZ_SAS	PF01853	230 - 302	2.3e-34	MOZ/SAS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09740 AT5G09740 AT5G64610
fragaria_vesca	FvH4_5g38850
malus_domestica	MD08G1173300.v1.1 MD15G1358600.v1.1
prunus_persica	Prupe.1G506200_v2.0.a1 Prupe.1G506200_v2.0.a1
pyrus_communis	pycom08g14790 pycom15g32100
rosa_chinensis	RchiOBHm_Chr7g0240841
rosa_laevigata	RLG00000000621
rosa_multiflora	Rmu_co8495669.1_g000001
rosa_roxburghii	Rroxscaffold_3G00219580
rosa_rugosa	Rorug07G0339400
rosa_samantha	Rh7AG493800 Rh7BG465700 Rh7CG512200 Rh7DG478900
rosa_wichuraiana	Rw0G010710 Rw7G041780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	56
AccII	CGCG	1 cut(s)	489
AciI	CCGC	6 cut(s)	29, 60, 157, 264, 267, 430
AcsI	RAATTY	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	638
AcyI	GRCGYC	2 cut(s)	57, 131
AfaI	GTAC	3 cut(s)	224, 563, 608
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	310, 409, 601, 894
AjnI	CCWGG	1 cut(s)	691
AluBI	AGCT	6 cut(s)	405, 483, 604, 652, 790, 957
AluI	AGCT	6 cut(s)	405, 483, 604, 652, 790, 957
Alw26I	GTCTC	5 cut(s)	119, 207, 437, 548, 629
AoxI	GGCC	2 cut(s)	117, 269
ApaI	GGGCCC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	476
ApoI	RAATTY	1 cut(s)	500
ArsI	GACNNNNNNTTYG	2 cut(s)	756, 788
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	2 cut(s)	59, 642
AspS9I	GGNCC	2 cut(s)	269, 270
AsuHPI	GGTGA	2 cut(s)	343, 707
BaeGI	GKGCMC	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	273
BauI	CACGAG	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	4 cut(s)	95, 234, 429, 734
BceAI	ACGGC	4 cut(s)	47, 70, 91, 277
BciT130I	CCWGG	1 cut(s)	693
BclI	TGATCA	2 cut(s)	340, 799
BcoDI	GTCTC	5 cut(s)	119, 207, 437, 548, 629
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	3 cut(s)	60, 265, 477
BlsI	GCNGC	3 cut(s)	61, 266, 478
Bme1390I	CCNGG	1 cut(s)	693
BmgT120I	GGNCC	2 cut(s)	269, 270
BmiI	GGNNCC	2 cut(s)	58, 271
BmrFI	CCNGG	1 cut(s)	693
BmsI	GCATC	3 cut(s)	463, 694, 860
BpuEI	CTTGAG	1 cut(s)	665
BsaBI	GATNNNNATC	1 cut(s)	105
BsaHI	GRCGYC	2 cut(s)	57, 131
BsaWI	WCCGGW	2 cut(s)	22, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	914
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	693
BseGI	GGATG	4 cut(s)	168, 226, 685, 875
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	914
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	1 cut(s)	463
Bsh1236I	CGCG	1 cut(s)	489
BshFI	GGCC	2 cut(s)	119, 271
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	5 cut(s)	23, 96, 134, 250, 709
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	5 cut(s)	119, 207, 437, 548, 629
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	119, 271
Bsp120I	GGGCCC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	340, 349, 676, 799, 862
BspACI	CCGC	6 cut(s)	29, 60, 157, 264, 267, 430
BspANI	GGCC	2 cut(s)	119, 271
BspFNI	CGCG	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	2 cut(s)	58, 271
BspT107I	GGYRCC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	914
BssMI	GATC	5 cut(s)	340, 349, 676, 799, 862
BssNI	GRCGYC	2 cut(s)	57, 131
BssSI	CACGAG	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	2 cut(s)	38, 962
BstACI	GRCGYC	2 cut(s)	57, 131
BstC8I	GCNNGC	2 cut(s)	269, 481
BstF5I	GGATG	4 cut(s)	168, 226, 685, 875
BstFNI	CGCG	1 cut(s)	489
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	59, 642
BstKTI	GATC	5 cut(s)	343, 352, 679, 802, 865
BstMAI	GTCTC	5 cut(s)	119, 207, 437, 548, 629
BstMBI	GATC	5 cut(s)	340, 349, 676, 799, 862
BstMWI	GCNNNNNNNGC	1 cut(s)	658
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	691
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	273
BstUI	CGCG	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	119, 271
BtgZI	GCGATG	1 cut(s)	114
BtsCI	GGATG	4 cut(s)	168, 226, 685, 875
Cac8I	GCNNGC	2 cut(s)	269, 481
CciI	TCATGA	1 cut(s)	633
CfoI	GCGC	2 cut(s)	59, 642
Cfr13I	GGNCC	2 cut(s)	269, 270
CseI	GACGC	2 cut(s)	135, 139
Csp6I	GTAC	3 cut(s)	223, 562, 607
CviAII	CATG	7 cut(s)	169, 449, 461, 494, 558, 634, 972
CviQI	GTAC	3 cut(s)	223, 562, 607
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	5 cut(s)	342, 351, 678, 801, 864
DpnII	GATC	5 cut(s)	340, 349, 676, 799, 862
DrdI	GACNNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	638
EcoRII	CCWGG	1 cut(s)	691
EcoT38I	GRGCYC	1 cut(s)	273
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	7 cut(s)	172, 452, 464, 497, 561, 637, 975
FalI	AAGNNNNNCTT	4 cut(s)	593, 625, 636, 668
FatI	CATG	7 cut(s)	168, 448, 460, 493, 557, 633, 971
FauI	CCCGC	1 cut(s)	260
FauNDI	CATATG	2 cut(s)	663, 876
FbaI	TGATCA	2 cut(s)	340, 799
Fnu4HI	GCNGC	3 cut(s)	60, 265, 477
FokI	GGATG	4 cut(s)	175, 213, 672, 882
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	3 cut(s)	60, 265, 477
GlaI	GCGC	2 cut(s)	58, 641
GluI	GCNGC	3 cut(s)	60, 265, 477
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	119, 271
HapII	CCGG	5 cut(s)	23, 96, 134, 250, 709
HgaI	GACGC	2 cut(s)	135, 139
HhaI	GCGC	2 cut(s)	59, 642
Hin1I	GRCGYC	2 cut(s)	57, 131
Hin1II	CATG	7 cut(s)	172, 452, 464, 497, 561, 637, 975
Hin6I	GCGC	2 cut(s)	57, 640
HinP1I	GCGC	2 cut(s)	57, 640
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	7 cut(s)	137, 215, 356, 415, 593, 712, 769
HpaII	CCGG	5 cut(s)	23, 96, 134, 250, 709
HphI	GGTGA	2 cut(s)	343, 707
Hpy166II	GTNNAC	3 cut(s)	259, 295, 826
Hpy188I	TCNGA	6 cut(s)	43, 124, 142, 426, 657, 884
Hpy188III	TCNNGA	3 cut(s)	353, 634, 797
Hpy8I	GTNNAC	3 cut(s)	259, 295, 826
Hpy99I	CGWCG	3 cut(s)	77, 133, 151
HpyCH4III	ACNGT	2 cut(s)	38, 962
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	971
HpyF10VI	GCNNNNNNNGC	1 cut(s)	658
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	2 cut(s)	57, 131
Hsp92II	CATG	7 cut(s)	172, 452, 464, 497, 561, 637, 975
HspAI	GCGC	2 cut(s)	57, 640
KasI	GGCGCC	1 cut(s)	56
Ksp22I	TGATCA	2 cut(s)	340, 799
Kzo9I	GATC	5 cut(s)	340, 349, 676, 799, 862
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	3 cut(s)	463, 694, 860
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	2 cut(s)	64, 397
MalI	GATC	5 cut(s)	342, 351, 678, 801, 864
MboI	GATC	5 cut(s)	340, 349, 676, 799, 862
MboII	GAAGA	4 cut(s)	163, 445, 509, 552
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	2 cut(s)	500, 628
Mly113I	GGCGCC	1 cut(s)	57
MlyI	GAGTC	4 cut(s)	146, 209, 409, 587
MmeI	TCCRAC	3 cut(s)	120, 188, 862
MroXI	GAANNNNTTC	1 cut(s)	651
MspI	CCGG	5 cut(s)	23, 96, 134, 250, 709
MspR9I	CCNGG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	693
MvnI	CGCG	1 cut(s)	489
MwoI	GCNNNNNNNGC	1 cut(s)	658
NarI	GGCGCC	1 cut(s)	57
NdeI	CATATG	2 cut(s)	663, 876
NdeII	GATC	5 cut(s)	340, 349, 676, 799, 862
NlaIII	CATG	7 cut(s)	172, 452, 464, 497, 561, 637, 975
NlaIV	GGNNCC	2 cut(s)	58, 271
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	452
PagI	TCATGA	1 cut(s)	633
PciI	ACATGT	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	3 cut(s)	60, 146, 288
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	3 cut(s)	356, 712, 769
PkrI	GCNGC	3 cut(s)	61, 266, 478
PleI	GAGTC	4 cut(s)	145, 209, 409, 587
PluTI	GGCGCC	1 cut(s)	60
PpsI	GAGTC	4 cut(s)	145, 209, 409, 587
PscI	ACATGT	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	691
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	2 cut(s)	58, 271
PspOMI	GGGCCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	269, 270
RsaI	GTAC	3 cut(s)	224, 563, 608
RsaNI	GTAC	3 cut(s)	223, 562, 607
SatI	GCNGC	3 cut(s)	60, 265, 477
Sau3AI	GATC	5 cut(s)	340, 349, 676, 799, 862
Sau96I	GGNCC	2 cut(s)	269, 270
SchI	GAGTC	4 cut(s)	146, 209, 409, 587
ScrFI	CCNGG	1 cut(s)	693
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	3 cut(s)	463, 694, 860
SfcI	CTRYAG	1 cut(s)	528
SfoI	GGCGCC	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	2 cut(s)	500, 628
SsiI	CCGC	6 cut(s)	29, 60, 157, 264, 267, 430
SspDI	GGCGCC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	691
TaaI	ACNGT	2 cut(s)	38, 962
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	4 cut(s)	8, 149, 243, 732
TasI	AATT	2 cut(s)	500, 628
TatI	WGTACW	1 cut(s)	606
TauI	GCSGC	2 cut(s)	62, 267
TfiI	GAWTC	3 cut(s)	356, 712, 769
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	510, 622, 650
XapI	RAATTY	1 cut(s)	500
XceI	RCATGY	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.