Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8505517.1

Orthogroup ID

OG0009149

Physical Location & Seq

Genomic Coordinates Reverse (-)

237 .. 2952

Gene Structure 2716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8505517.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggatcaaaaacatgtgtttgatgggttaagatttggagagaaagcacaacggagcttacttgctgatcagattgttggtgttaattcactgttacttcaacaagctctagaaaatgttgagatacgttctaaaaggttgaatgtgactgagatggtcagcgcgcttaaagcagaagaaacaagtagtactctggaaatatcagagaaatgtctaatttcctctgcaagtgaagataagctgagtacacattcccatcttcaagagaagggagtagatcttttatctaaaggcaaagttgccattgctttagtcgtaaacaattctaacgactcagagaacactatgtcttcctttgttcagacattacttcgtgacgatcagagacttttaaagatggaagaccgtgccttggttcctttgattttggtttgctcagctcagaaaattgaatctttaaggatgcatttctcagaaaatgattactacggctttaactcgggaaaggtccagttctttgaggaagagaaacttccagttgtcagcaattcagtggaagaagagaagaatcataagattttgatgaaatcaccttgggaaattcttcaatcaccagttggatcaggaggagttttcagcttgctttcatcacacaacgttccagagaatctaagtgagatgggtgtcgagtatattgagatatgcagcaccaatccaagaaatgtaggtgccaactcactgcttctcgggtttgttaataagaacaaagctgacgttgggatccaaatcttcaaagatacaaatgattttgaagagagtttcgacgtgatattctcaacagaccatatgaagaagttgacaaagcaactcaataaactccagttcaatgcaactacaaagcaaaatgcgtatgttgagatggtggacaaggagtgggttgatgttaaccccagttctcccaactcatatgagtttgattgcacgatttacagctctttaaaggcctgttctttcgataagctttgtatactggaggttacaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PRC RimM UDPGP

Protein Analysis

348

Amino Acids

39.07

Weight (kDa)

5.13

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46420
fragaria_vesca	FvH4_3g06410 FvH4_3g06410 FvH4_3g06410 FvH4_3g06410 FvH4_3g06410 FvH4_3g06410 FvH4_3g06410
malus_domestica	MD05G1291800.v1.1
prunus_persica	Prupe.4G073700_v2.0.a1
pyrus_communis	pycom05g26830
rosa_chinensis	RchiOBHm_Chr5g0012901
rosa_laevigata	RLG00000031967
rosa_multiflora	Rmu_co8505517.1_g000001 Rmu_sc0010496.1_g000008
rosa_roxburghii	Rroxscaffold_1G00063680
rosa_rugosa	Rorug05G0005100
rosa_samantha	Rh5AG099300 Rh5BG095900 Rh5CG108200 Rh5DG094600
rosa_wichuraiana	Rw5G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	1027
AccII	CGCG	1 cut(s)	164
AclI	AACGTT	1 cut(s)	657
AclWI	GGATC	4 cut(s)	12, 628, 775, 788
AcsI	RAATTY	1 cut(s)	600
AfaI	GTAC	2 cut(s)	190, 247
AfiI	CCNNNNNNNGG	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	13
AgsI	TTSAA	8 cut(s)	101, 142, 263, 452, 608, 793, 812, 886
AjiI	CACGTC	1 cut(s)	826
AluBI	AGCT	8 cut(s)	57, 107, 241, 440, 639, 770, 993, 1021
AluI	AGCT	8 cut(s)	57, 107, 241, 440, 639, 770, 993, 1021
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	4 cut(s)	12, 628, 775, 788
Ama87I	CYCGRG	2 cut(s)	499, 746
AoxI	GGCC	1 cut(s)	1002
ApeKI	GCWGC	1 cut(s)	705
ApoI	RAATTY	1 cut(s)	600
Asp700I	GAANNNNTTC	1 cut(s)	603
AspLEI	GCGC	2 cut(s)	164, 166
AspS9I	GGNCC	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	582, 603
AvaI	CYCGRG	2 cut(s)	499, 746
AvaII	GGWCC	1 cut(s)	508
BamHI	GGATCC	1 cut(s)	780
BanI	GGYRCC	1 cut(s)	728
BbsI	GAAGAC	2 cut(s)	342, 408
BbvI	GCAGC	1 cut(s)	717
BccI	CCATC	6 cut(s)	17, 148, 264, 391, 673, 913
BceAI	ACGGC	1 cut(s)	505
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	1 cut(s)	110
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	1 cut(s)	706
BlpI	GCTNAGC	1 cut(s)	436
BlsI	GCNGC	1 cut(s)	707
BmcAI	AGTACT	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	508
BmeT110I	CYCGRG	2 cut(s)	499, 746
BmgBI	CACGTC	1 cut(s)	826
BmgT120I	GGNCC	1 cut(s)	508
BmiI	GGNNCC	3 cut(s)	417, 730, 782
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	945
BpiI	GAAGAC	2 cut(s)	342, 408
BpmI	CTGGAG	1 cut(s)	863
Bpu1102I	GCTNAGC	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	785
BsaJI	CCNNGG	2 cut(s)	411, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse1I	ACTGG	6 cut(s)	511, 536, 614, 880, 951, 1035
Bse3DI	GCAATG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	785
BseDI	CCNNGG	2 cut(s)	411, 593
BseGI	GGATG	1 cut(s)	468
BseJI	GATNNNNATC	1 cut(s)	785
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	6 cut(s)	141, 233, 348, 450, 455, 486
BseNI	ACTGG	6 cut(s)	511, 536, 614, 880, 951, 1035
BsePI	GCGCGC	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	642
BseXI	GCAGC	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	1004
BshNI	GGYRCC	1 cut(s)	728
BsiHKCI	CYCGRG	2 cut(s)	499, 746
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	1004
BsoBI	CYCGRG	2 cut(s)	499, 746
Bsp143I	GATC	6 cut(s)	4, 67, 277, 379, 620, 780
Bsp1720I	GCTNAGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	1004
BspCNI	CTCAG	6 cut(s)	142, 234, 347, 449, 454, 485
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	3 cut(s)	417, 730, 782
BspPI	GGATC	4 cut(s)	12, 628, 775, 788
BspT107I	GGYRCC	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	6 cut(s)	511, 536, 614, 880, 951, 1035
BssECI	CCNNGG	2 cut(s)	411, 593
BssHII	GCGCGC	1 cut(s)	162
BssMI	GATC	6 cut(s)	4, 67, 277, 379, 620, 780
BssNAI	GTATAC	1 cut(s)	1028
BssT1I	CCWWGG	2 cut(s)	411, 593
Bst1107I	GTATAC	1 cut(s)	1028
Bst4CI	ACNGT	2 cut(s)	93, 407
Bst6I	CTCTTC	3 cut(s)	519, 555, 807
BstC8I	GCNNGC	2 cut(s)	164, 641
BstDEI	CTNAG	7 cut(s)	150, 242, 334, 436, 441, 472, 671
BstF5I	GGATG	1 cut(s)	468
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	164, 166
BstKTI	GATC	6 cut(s)	7, 70, 280, 382, 623, 783
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	6 cut(s)	4, 67, 277, 379, 620, 780
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNSI	RCATGY	1 cut(s)	17
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	717
BstV2I	GAAGAC	2 cut(s)	342, 408
BstX2I	RGATCY	2 cut(s)	277, 780
BstYI	RGATCY	2 cut(s)	277, 780
BstZ17I	GTATAC	1 cut(s)	1028
BsuRI	GGCC	1 cut(s)	1004
BtrI	CACGTC	1 cut(s)	826
BtsCI	GGATG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	737
BtsIMutI	CAGTG	3 cut(s)	89, 558, 737
Cac8I	GCNNGC	2 cut(s)	164, 641
CfoI	GCGC	2 cut(s)	164, 166
Cfr13I	GGNCC	1 cut(s)	508
Csp6I	GTAC	2 cut(s)	189, 246
CviAII	CATG	1 cut(s)	14
CviQI	GTAC	2 cut(s)	189, 246
DdeI	CTNAG	7 cut(s)	150, 242, 334, 436, 441, 472, 671
DpnI	GATC	6 cut(s)	6, 69, 279, 381, 622, 782
DpnII	GATC	6 cut(s)	4, 67, 277, 379, 620, 780
DraI	TTTAAA	2 cut(s)	393, 999
Eam1104I	CTCTTC	3 cut(s)	519, 555, 807
EarI	CTCTTC	3 cut(s)	519, 555, 807
Eco130I	CCWWGG	2 cut(s)	411, 593
Eco147I	AGGCCT	1 cut(s)	1004
Eco47I	GGWCC	1 cut(s)	508
Eco88I	CYCGRG	2 cut(s)	499, 746
EcoT14I	CCWWGG	2 cut(s)	411, 593
EcoT22I	ATGCAT	1 cut(s)	468
ErhI	CCWWGG	2 cut(s)	411, 593
FaeI	CATG	1 cut(s)	17
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FatI	CATG	1 cut(s)	13
FauNDI	CATATG	2 cut(s)	846, 967
FbaI	TGATCA	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	1027
Fnu4HI	GCNGC	1 cut(s)	706
FokI	GGATG	1 cut(s)	475
Fsp4HI	GCNGC	1 cut(s)	706
FspBI	CTAG	1 cut(s)	110
GlaI	GCGC	2 cut(s)	163, 165
GluI	GCNGC	1 cut(s)	706
GsuI	CTGGAG	1 cut(s)	863
HaeIII	GGCC	1 cut(s)	1004
HhaI	GCGC	2 cut(s)	164, 166
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	2 cut(s)	162, 164
HinP1I	GCGC	2 cut(s)	162, 164
HincII	GTYRAC	2 cut(s)	858, 946
HindII	GTYRAC	2 cut(s)	858, 946
HindIII	AAGCTT	1 cut(s)	1019
HinfI	GANTC	4 cut(s)	332, 452, 568, 667
HpaI	GTTAAC	1 cut(s)	946
HphI	GGTGA	2 cut(s)	582, 603
Hpy166II	GTNNAC	6 cut(s)	248, 319, 858, 925, 946, 1028
Hpy188I	TCNGA	7 cut(s)	72, 205, 337, 363, 384, 444, 475
Hpy188III	TCNNGA	7 cut(s)	110, 194, 263, 374, 501, 624, 662
Hpy8I	GTNNAC	6 cut(s)	248, 319, 858, 925, 946, 1028
Hpy99I	CGWCG	1 cut(s)	827
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	2 cut(s)	93, 407
HpyCH4IV	ACGT	4 cut(s)	127, 657, 774, 825
HpyCH4V	TGCA	5 cut(s)	227, 466, 705, 890, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	7 cut(s)	150, 242, 334, 436, 441, 472, 671
HpySE526I	ACGT	4 cut(s)	127, 657, 774, 825
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	2 cut(s)	162, 164
Ksp22I	TGATCA	1 cut(s)	67
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	6 cut(s)	4, 67, 277, 379, 620, 780
LmnI	GCTCC	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	717
LweI	GCATC	1 cut(s)	453
MaeI	CTAG	1 cut(s)	110
MaeII	ACGT	4 cut(s)	127, 657, 774, 825
MaeIII	GTNAC	4 cut(s)	93, 145, 374, 1036
MalI	GATC	6 cut(s)	6, 69, 279, 381, 622, 782
MboI	GATC	6 cut(s)	4, 67, 277, 379, 620, 780
MflI	RGATCY	2 cut(s)	277, 780
MluCI	AATT	6 cut(s)	85, 216, 322, 447, 547, 600
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	4 cut(s)	232, 514, 620, 1027
Mph1103I	ATGCAT	1 cut(s)	468
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	9 cut(s)	29, 84, 168, 392, 458, 495, 756, 945, 998
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeI	CATATG	2 cut(s)	846, 967
NdeII	GATC	6 cut(s)	4, 67, 277, 379, 620, 780
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	3 cut(s)	417, 730, 782
NmuCI	GTSAC	2 cut(s)	145, 374
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	17
PauI	GCGCGC	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	1004
PciI	ACATGT	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	3 cut(s)	452, 568, 667
PkrI	GCNGC	1 cut(s)	707
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PscI	ACATGT	1 cut(s)	13
Psp1406I	AACGTT	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	417, 730, 782
PspPI	GGNCC	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	277, 780
PteI	GCGCGC	1 cut(s)	162
RsaI	GTAC	2 cut(s)	190, 247
RsaNI	GTAC	2 cut(s)	189, 246
SaqAI	TTAA	9 cut(s)	29, 84, 168, 392, 458, 495, 756, 945, 998
SatI	GCNGC	1 cut(s)	706
Sau3AI	GATC	6 cut(s)	4, 67, 277, 379, 620, 780
Sau96I	GGNCC	1 cut(s)	508
ScaI	AGTACT	1 cut(s)	190
SchI	GAGTC	1 cut(s)	326
SfaNI	GCATC	1 cut(s)	453
SinI	GGWCC	1 cut(s)	508
Sse9I	AATT	6 cut(s)	85, 216, 322, 447, 547, 600
SseBI	AGGCCT	1 cut(s)	1004
SspMI	CTAG	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	1004
StyI	CCWWGG	2 cut(s)	411, 593
TaaI	ACNGT	2 cut(s)	93, 407
TaiI	ACGT	4 cut(s)	130, 660, 777, 828
TaqI	TCGA	3 cut(s)	687, 822, 1014
TasI	AATT	6 cut(s)	85, 216, 322, 447, 547, 600
TatI	WGTACW	2 cut(s)	188, 245
TfiI	GAWTC	3 cut(s)	452, 568, 667
Tru1I	TTAA	9 cut(s)	29, 84, 168, 392, 458, 495, 756, 945, 998
Tru9I	TTAA	9 cut(s)	29, 84, 168, 392, 458, 495, 756, 945, 998
TscAI	CASTG	3 cut(s)	96, 558, 744
TseFI	GTSAC	2 cut(s)	145, 374
TseI	GCWGC	1 cut(s)	705
Tsp45I	GTSAC	2 cut(s)	145, 374
TspDTI	ATGAA	3 cut(s)	599, 636, 863
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	3 cut(s)	96, 558, 744
VpaK11BI	GGWCC	1 cut(s)	508
XapI	RAATTY	1 cut(s)	600
XbaI	TCTAGA	1 cut(s)	109
XceI	RCATGY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	1027
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	1 cut(s)	110
ZrmI	AGTACT	1 cut(s)	190
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.