Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010496.1

Orthogroup ID

OG0009149

Physical Location & Seq

Genomic Coordinates Reverse (-)

38092 .. 40543

Gene Structure 2452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010496.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgcagagagcttccattctctgttgttcaaatccactccttcccatccccactttcccacccaccactcataaactcgctgccgcttcccttcaaactcggcacactcgtcttgactcggtttcctcacctctccgacttcccctgaattaccgccttgccctccctcccctacacagcactgccactgaagagattgttgagactgctgaggcggttagaggattcgttagtgttggttatgttgccaatgtccatgggcttcaaggagagattcgtgtgaaacctagcactgactttcctgaattgcggtttgctgagcctggaagaagatggctgcgacaacaaatatcaggccaagaaagagttgaagaagttgaactggtggagggaagaggacaccctggccagaagagttggatacttagattgagaggaattgacgatgtggatcaggctaggcagcttattggttcaactttacttgtgagggaagaagataggccagagttggaagaaggtgaaatctatagtcgtgatctcctcggaatgagagttattctcaaggaaacaggtaaacctctgggaaatgttgttaatgttttcaacagcggagcaagcgatcttctacaggtcatgcttgattcatcgcttgatattcttgactcaactggcaagccaaagccagcaggaacaacattatctggtcaccttgtgttgataccgtttgtcgaagaaattgttccagatgttgatataaagaataaagaaatgcagattacacctccaaagggactccttgaactaaatttacgctttgatgagagatcgaagaaagaaaggcgccagattgtgaggcactctcttgttctacctacaagcaaaaagaaattccagtgccaggattcgaacctgggagaaatagaaattttccaagcatgtgctacaccggatttgttgttaaggatatgctttatttatatttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 ko01130 map00520 map01100 map01130

Pfam Domains

Protein Families

PRC RimM UDPGP

Protein Analysis

329

Amino Acids

36.89

Weight (kDa)

6.42

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46420
fragaria_vesca	FvH4_3g06410 FvH4_3g06410 FvH4_3g06410 FvH4_3g06410 FvH4_3g06410 FvH4_3g06410 FvH4_3g06410
malus_domestica	MD05G1291800.v1.1
prunus_persica	Prupe.4G073700_v2.0.a1
pyrus_communis	pycom05g26830
rosa_chinensis	RchiOBHm_Chr5g0012901
rosa_laevigata	RLG00000031967
rosa_multiflora	Rmu_co8505517.1_g000001 Rmu_sc0010496.1_g000008
rosa_roxburghii	Rroxscaffold_1G00063680
rosa_rugosa	Rorug05G0005100
rosa_samantha	Rh5AG099300 Rh5BG095900 Rh5CG108200 Rh5DG094600
rosa_wichuraiana	Rw5G008670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	843
AciI	CCGC	5 cut(s)	84, 154, 215, 310, 612
AclWI	GGATC	1 cut(s)	459
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	3 cut(s)	808, 890, 927
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	844
AdeI	CACNNNGTG	1 cut(s)	715
AfiI	CCNNNNNNNGG	2 cut(s)	791, 901
AgsI	TTSAA	8 cut(s)	30, 95, 266, 371, 380, 477, 607, 803
AjnI	CCWGG	4 cut(s)	322, 403, 900, 912
AluBI	AGCT	2 cut(s)	11, 466
AluI	AGCT	2 cut(s)	11, 466
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	3 cut(s)	355, 406, 503
ApeKI	GCWGC	3 cut(s)	80, 337, 463
ApoI	RAATTY	3 cut(s)	808, 890, 927
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	846
AsuHPI	GGTGA	3 cut(s)	120, 533, 701
AsuII	TTCGAA	1 cut(s)	908
BalI	TGGCCA	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	843
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	67, 324, 475
BccI	CCATC	2 cut(s)	53, 327
BciT130I	CCWGG	4 cut(s)	324, 405, 902, 914
BciVI	GTATCC	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	2 cut(s)	288, 459
BfmI	CTRYAG	2 cut(s)	529, 629
BfoI	RGCGCY	1 cut(s)	847
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	4 cut(s)	81, 84, 338, 464
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	4 cut(s)	82, 85, 339, 465
Bme1390I	CCNGG	4 cut(s)	324, 405, 902, 914
BmiI	GGNNCC	1 cut(s)	845
BmrFI	CCNGG	4 cut(s)	324, 405, 902, 914
BplI	GAGNNNNNCTC	4 cut(s)	546, 578, 847, 879
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	908
BpuEI	CTTGAG	1 cut(s)	548
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	844
BsaJI	CCNNGG	4 cut(s)	256, 403, 544, 913
BsaWI	WCCGGW	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	2 cut(s)	791, 901
Bse1I	ACTGG	3 cut(s)	387, 676, 895
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	4 cut(s)	324, 405, 902, 914
BseDI	CCNNGG	4 cut(s)	256, 403, 544, 913
BseGI	GGATG	1 cut(s)	45
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	791, 901
BseMII	CTCAG	2 cut(s)	201, 309
BseNI	ACTGG	3 cut(s)	387, 676, 895
BseRI	GAGGAG	1 cut(s)	533
BseXI	GCAGC	3 cut(s)	67, 324, 475
BshFI	GGCC	3 cut(s)	357, 408, 505
BshNI	GGYRCC	1 cut(s)	843
BsiSI	CCGG	1 cut(s)	950
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	2 cut(s)	791, 901
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	3 cut(s)	357, 408, 505
Bsp119I	TTCGAA	1 cut(s)	908
Bsp143I	GATC	4 cut(s)	451, 538, 622, 827
Bsp1720I	GCTNAGC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	256
BspACI	CCGC	5 cut(s)	84, 154, 215, 310, 612
BspANI	GGCC	3 cut(s)	357, 408, 505
BspCNI	CTCAG	2 cut(s)	202, 310
BspLI	GGNNCC	1 cut(s)	845
BspPI	GGATC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	908
BspT107I	GGYRCC	1 cut(s)	843
BsrI	ACTGG	3 cut(s)	387, 676, 895
BssECI	CCNNGG	4 cut(s)	256, 403, 544, 913
BssMI	GATC	4 cut(s)	451, 538, 622, 827
BssNI	GRCGYC	1 cut(s)	844
BssT1I	CCWWGG	1 cut(s)	256
Bst2UI	CCWGG	4 cut(s)	324, 405, 902, 914
Bst4CI	ACNGT	1 cut(s)	726
Bst6I	CTCTTC	3 cut(s)	186, 388, 407
BstACI	GRCGYC	1 cut(s)	844
BstBI	TTCGAA	1 cut(s)	908
BstC8I	GCNNGC	3 cut(s)	619, 677, 687
BstDEI	CTNAG	3 cut(s)	210, 318, 425
BstDSI	CCRYGG	1 cut(s)	256
BstEII	GGTNACC	1 cut(s)	707
BstF5I	GGATG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	847
BstHHI	GCGC	1 cut(s)	846
BstKTI	GATC	4 cut(s)	454, 541, 625, 830
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	451, 538, 622, 827
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	4 cut(s)	324, 405, 902, 914
BstNSI	RCATGY	1 cut(s)	942
BstPI	GGTNACC	1 cut(s)	707
BstSCI	CCNGG	4 cut(s)	322, 403, 900, 912
BstSFI	CTRYAG	2 cut(s)	529, 629
BstV1I	GCAGC	3 cut(s)	67, 324, 475
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	357, 408, 505
BtgI	CCRYGG	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	45
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	4 cut(s)	180, 186, 291, 902
Cac8I	GCNNGC	3 cut(s)	619, 677, 687
CfoI	GCGC	1 cut(s)	846
CviAII	CATG	3 cut(s)	257, 637, 939
DdeI	CTNAG	3 cut(s)	210, 318, 425
DinI	GGCGCC	1 cut(s)	845
DpnI	GATC	4 cut(s)	453, 540, 624, 829
DpnII	GATC	4 cut(s)	451, 538, 622, 827
DraIII	CACNNNGTG	1 cut(s)	715
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	3 cut(s)	186, 388, 407
EarI	CTCTTC	3 cut(s)	186, 388, 407
Eco130I	CCWWGG	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	210
Eco91I	GGTNACC	1 cut(s)	707
EcoO65I	GGTNACC	1 cut(s)	707
EcoRII	CCWGG	4 cut(s)	322, 403, 900, 912
EcoT14I	CCWWGG	1 cut(s)	256
EgeI	GGCGCC	1 cut(s)	845
EheI	GGCGCC	1 cut(s)	845
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	3 cut(s)	260, 640, 942
FaiI	YATR	9 cut(s)	72, 243, 258, 531, 638, 758, 940, 970, 981
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	3 cut(s)	256, 636, 938
Fnu4HI	GCNGC	4 cut(s)	81, 84, 338, 464
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	4 cut(s)	81, 84, 338, 464
FspBI	CTAG	2 cut(s)	288, 459
GlaI	GCGC	1 cut(s)	845
GluI	GCNGC	4 cut(s)	81, 84, 338, 464
HaeII	RGCGCY	1 cut(s)	847
HaeIII	GGCC	3 cut(s)	357, 408, 505
HapII	CCGG	1 cut(s)	950
HhaI	GCGC	1 cut(s)	846
Hin1I	GRCGYC	1 cut(s)	844
Hin1II	CATG	3 cut(s)	260, 640, 942
Hin6I	GCGC	1 cut(s)	844
HinP1I	GCGC	1 cut(s)	844
HinfI	GANTC	7 cut(s)	116, 225, 274, 644, 665, 795, 905
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	3 cut(s)	120, 533, 701
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188I	TCNGA	2 cut(s)	137, 548
Hpy188III	TCNNGA	5 cut(s)	113, 302, 536, 662, 746
Hpy8I	GTNNAC	1 cut(s)	578
HpyAV	CCTTC	3 cut(s)	50, 101, 512
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4V	TGCA	2 cut(s)	4, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	3 cut(s)	210, 318, 425
Hsp92I	GRCGYC	1 cut(s)	844
Hsp92II	CATG	3 cut(s)	260, 640, 942
HspAI	GCGC	1 cut(s)	844
KasI	GGCGCC	1 cut(s)	843
Kzo9I	GATC	4 cut(s)	451, 538, 622, 827
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	3 cut(s)	67, 324, 475
MaeI	CTAG	2 cut(s)	288, 459
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	4 cut(s)	453, 540, 624, 829
MboI	GATC	4 cut(s)	451, 538, 622, 827
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	7 cut(s)	148, 305, 438, 738, 808, 890, 927
MluNI	TGGCCA	1 cut(s)	408
Mly113I	GGCGCC	1 cut(s)	844
MlyI	GAGTC	3 cut(s)	110, 659, 789
MmeI	TCCRAC	3 cut(s)	160, 398, 492
Mox20I	TGGCCA	1 cut(s)	408
MroXI	GAANNNNTTC	1 cut(s)	741
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	3 cut(s)	597, 962, 988
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	612
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	4 cut(s)	324, 405, 902, 914
MvaI	CCWGG	4 cut(s)	324, 405, 902, 914
MwoI	GCNNNNNNNGC	1 cut(s)	618
NarI	GGCGCC	1 cut(s)	844
NcoI	CCATGG	1 cut(s)	256
NdeII	GATC	4 cut(s)	451, 538, 622, 827
NlaIII	CATG	3 cut(s)	260, 640, 942
NlaIV	GGNNCC	1 cut(s)	845
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	707
NspI	RCATGY	1 cut(s)	942
NspV	TTCGAA	1 cut(s)	908
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	4 cut(s)	225, 274, 644, 905
PkrI	GCNGC	4 cut(s)	82, 85, 339, 465
PleI	GAGTC	3 cut(s)	110, 659, 789
PluTI	GGCGCC	1 cut(s)	847
PpsI	GAGTC	3 cut(s)	110, 659, 789
Psp6I	CCWGG	4 cut(s)	322, 403, 900, 912
PspEI	GGTNACC	1 cut(s)	707
PspGI	CCWGG	4 cut(s)	322, 403, 900, 912
PspN4I	GGNNCC	1 cut(s)	845
PsrI	GAACNNNNNNTAC	2 cut(s)	795, 827
SaqAI	TTAA	3 cut(s)	597, 962, 988
SatI	GCNGC	4 cut(s)	81, 84, 338, 464
Sau3AI	GATC	4 cut(s)	451, 538, 622, 827
SchI	GAGTC	3 cut(s)	110, 659, 789
ScrFI	CCNGG	4 cut(s)	324, 405, 902, 914
SfcI	CTRYAG	2 cut(s)	529, 629
SfoI	GGCGCC	1 cut(s)	845
SfuI	TTCGAA	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	7 cut(s)	148, 305, 438, 738, 808, 890, 927
SsiI	CCGC	5 cut(s)	84, 154, 215, 310, 612
SspDI	GGCGCC	1 cut(s)	843
SspMI	CTAG	2 cut(s)	288, 459
StyD4I	CCNGG	4 cut(s)	322, 403, 900, 912
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	1 cut(s)	726
TaqI	TCGA	3 cut(s)	732, 830, 908
TasI	AATT	7 cut(s)	148, 305, 438, 738, 808, 890, 927
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	4 cut(s)	225, 274, 644, 905
Tru1I	TTAA	3 cut(s)	597, 962, 988
Tru9I	TTAA	3 cut(s)	597, 962, 988
TscAI	CASTG	4 cut(s)	187, 193, 298, 902
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	3 cut(s)	80, 337, 463
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	1 cut(s)	636
TspRI	CASTG	4 cut(s)	187, 193, 298, 902
XapI	RAATTY	3 cut(s)	808, 890, 927
XceI	RCATGY	1 cut(s)	942
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	2 cut(s)	288, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.