Rmu_co8515551.1_g000001

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8515551.1
OG0014280
Physical Location & Seq
Reverse (-)
1 .. 3905
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8515551.1_g000001.1.cds

Sequence Viewer

Length: 1864 bp
atgtattgtggtgtgcttttagtaggtagccaaccagatttgaatcgacaagttgtggctataaccgtttttttcttgctaacggttgcatattatgccttctttgctccctttcttggaaatgacatctatgagtatgtggcaattggtgtatattctgcattggtgttttctgtattcatactttatgttcggtgtacagcaattgatcctgctgattctggaatactacttgaagctgacaagacattttcccacaaagaaaacaataacacagggaacatttcattcagtaatggaggacaagtggacagccatggtgcaagttggtgctcaaaagttggaggtttcttctgtggttgtcttgtaagagaagattgccgccaacgtgaagatctcttgcaattacagcagcaatctggagaggatcctctcttctgcactttgtgcaatgctgaggtcggcaagttcagcaaacattgtagaagctgtgataaatgtgttgatggatttgatcatcattgtcggtggctaaataattgtgtggggaggaaaaattatatcacatttgtgtctcttatggctgcaagccttgtttggcttattgttgaatgtggtgttggtattgctgtccttgttcgatgctttgctgataaaaatagtatgaaaaggcagatagctgataggcttggagttggtttctctcagcccccctttgccactgtggtggccctatgtacagctatttccttccttgccatttatcctctggcagagctgttctttttccacataattttgattcgaaagggtattacaacctatgagtatgtcgttgcgatgagaacacaaagtgaacctcctggaccatcagtggatggaggcgatcagcaaagtattgcatcttctccaacaagttcagctgtgactgccatgagtggaagaagctctcttggaatgaatttgccatacaaaggtgcttggtgcacccctccaaggatctttgtggatcaccagatgcaggatgaaattattccacatttggagccaggacgcttaccatcgacactggatccagatgcaatacagcagcctgataaggcaaaaaaattaccccagcgtccagtccgaataagtgcatggaagcttgctaaactagatgctaatgaggcaaccaaagcagctgccaaagctagagcatcatcatctgtgcttcgtccaattagttctcaacatcatccgtatgaagctgaatatgtatcgagcagtaatgtgagtggaagaagtagtccaactagtactgatcaggggtttaacaacagaaacactagaactgggacatcaaaattgtctcctatgagctcatacccacctagtcgtgctagcagagaagatgttgaaattggacgttacgctggtagtaacttaagcagtcctcatgtctctagtctcaccccttctcctctagagcagaaaacttcaaacttggatcagttcaaccccatttatcagtcatcaaatgatcaatctccattgtcagaaaatcaaagtgaagcaaaggtaaatgtaggacagatgcctacagaaaaaggtaactcaattcttcaaggaaatgggagatcgtcagttttttgggatcaagaagcgggacgttttgtctcatcttccagatctggtggttcctcctcaggagcagagctattgtacacgggacaatccatattttttggtggacctgttctcaatgaaccacccgctagagggacaaggaatattggttcactggcttccgagcatgacagaggttctacatatcaacagggtagatcacagagaggtggccagcttcccgtgtttgttccaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

621

Amino Acids

67.54

Weight (kDa)

7.82

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33640
fragaria_vesca FvH4_5g25830 FvH4_5g25830 FvH4_5g25830 FvH4_5g25830
prunus_persica Prupe.5G007200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0216301
rosa_laevigata RLG00000002583
rosa_multiflora Rmu_co8515551.1_g000001 Rmu_sc0004663.1_g000002
rosa_roxburghii Rroxscaffold_3G00243350
rosa_rugosa Rorug07G0159800
rosa_samantha Rh7AG297100 Rh7BG289300 Rh7CG317400 Rh7DG299600
rosa_wichuraiana Rw7G025270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 382, 1646, 1755
AclWI GGATC 9 cut(s) 203, 422, 435, 1007, 1017, 1067, 1080, 1497, 1644
AcoI YGGCCR 1 cut(s) 1840
AcsI RAATTY 1 cut(s) 961
AdeI CACNNNGTG 2 cut(s) 447, 854
AfaI GTAC 4 cut(s) 199, 739, 1300, 1706
AfiI CCNNNNNNNGG 6 cut(s) 116, 974, 996, 1021, 1760, 1761
AflII CTTAAG 1 cut(s) 1426
AgsI TTSAA 7 cut(s) 43, 236, 611, 1400, 1482, 1498, 1607
AhdI GACNNNNNGTC 1 cut(s) 1655
AhlI ACTAGT 1 cut(s) 1295
AjnI CCWGG 2 cut(s) 862, 1048
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
AleI CACNNNNGTG 2 cut(s) 569, 725
AloI GAACNNNNNNTCC 2 cut(s) 1762, 1794
Alw21I GWGCWC 3 cut(s) 335, 989, 1364
Alw26I GTCTC 5 cut(s) 579, 1356, 1447, 1454, 1663
Alw44I GTGCAC 1 cut(s) 985
AlwI GGATC 9 cut(s) 203, 422, 435, 1007, 1017, 1067, 1080, 1497, 1644
AoxI GGCC 2 cut(s) 729, 1840
ApaLI GTGCAC 1 cut(s) 985
ApeKI GCWGC 5 cut(s) 412, 584, 1090, 1181, 1184
ApoI RAATTY 1 cut(s) 961
Asp700I GAANNNNTTC 1 cut(s) 1032
AspS9I GGNCC 3 cut(s) 730, 866, 1733
AsuHPI GGTGA 2 cut(s) 1004, 1444
AsuII TTCGAA 1 cut(s) 805
AsuNHI GCTAGC 1 cut(s) 1382
AvaII GGWCC 2 cut(s) 866, 1733
AxyI CCTNAGG 1 cut(s) 1687
BaeGI GKGCMC 1 cut(s) 989
BalI TGGCCA 1 cut(s) 1842
BamHI GGATCC 2 cut(s) 427, 1072
BanII GRGCYC 1 cut(s) 1364
BarI GAAGNNNNNNTAC 2 cut(s) 889, 921
Bbv12I GWGCWC 3 cut(s) 335, 989, 1364
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 5 cut(s) 424, 571, 1102, 1171, 1193
BccI CCATC 4 cut(s) 500, 872, 877, 1069
BciT130I CCWGG 2 cut(s) 864, 1050
BclI TGATCA 3 cut(s) 514, 1303, 1522
BcoDI GTCTC 5 cut(s) 579, 1356, 1447, 1454, 1663
BcuI ACTAGT 1 cut(s) 1295
BfaI CTAG 9 cut(s) 1157, 1194, 1296, 1329, 1374, 1383, 1446, 1466, 1758
BfmI CTRYAG 1 cut(s) 1581
BfrI CTTAAG 1 cut(s) 1426
BglII AGATCT 2 cut(s) 394, 1670
BisI GCNGC 6 cut(s) 382, 413, 585, 1091, 1182, 1185
BlsI GCNGC 6 cut(s) 383, 414, 586, 1092, 1183, 1186
BmcAI AGTACT 1 cut(s) 1300
Bme1390I CCNGG 2 cut(s) 864, 1050
Bme18I GGWCC 2 cut(s) 866, 1733
BmeRI GACNNNNNGTC 1 cut(s) 1655
BmgT120I GGNCC 3 cut(s) 730, 866, 1733
BmiI GGNNCC 4 cut(s) 429, 1047, 1074, 1681
BmrFI CCNGG 2 cut(s) 864, 1050
BmrI ACTGGG 1 cut(s) 1344
BmsI GCATC 7 cut(s) 632, 911, 1008, 1069, 1150, 1208, 1566
BmtI GCTAGC 1 cut(s) 1386
BmuI ACTGGG 1 cut(s) 1344
BpmI CTGGAG 1 cut(s) 441
Bpu10I CCTNAGC 1 cut(s) 456
Bpu14I TTCGAA 1 cut(s) 805
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 316, 995
BsaXI ACNNNNNCTCC 4 cut(s) 291, 321, 1444, 1474
Bsc4I CCNNNNNNNGG 6 cut(s) 116, 974, 996, 1021, 1760, 1761
Bse1I ACTGG 4 cut(s) 1074, 1124, 1339, 1788
Bse21I CCTNAGG 1 cut(s) 1687
Bse3DI GCAATG 1 cut(s) 457
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 2 cut(s) 864, 1050
BseDI CCNNGG 2 cut(s) 316, 995
BseGI GGATG 3 cut(s) 883, 1030, 1237
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 6 cut(s) 116, 974, 996, 1021, 1760, 1761
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 3 cut(s) 447, 719, 1701
BseNI ACTGG 4 cut(s) 1074, 1124, 1339, 1788
BseRI GAGGAG 2 cut(s) 1452, 1675
BseSI GKGCMC 1 cut(s) 989
BseXI GCAGC 5 cut(s) 424, 571, 1102, 1171, 1193
BseYI CCCAGC 1 cut(s) 1116
BsgI GTGCAG 1 cut(s) 424
BshFI GGCC 2 cut(s) 731, 1842
BsiHKAI GWGCWC 3 cut(s) 335, 989, 1364
BslFI GGGAC 4 cut(s) 1351, 1662, 1725, 1777
BslI CCNNNNNNNGG 6 cut(s) 116, 974, 996, 1021, 1760, 1761
BsmAI GTCTC 5 cut(s) 579, 1356, 1447, 1454, 1663
BsmFI GGGAC 4 cut(s) 1351, 1662, 1725, 1777
BsnI GGCC 2 cut(s) 731, 1842
Bsp119I TTCGAA 1 cut(s) 805
Bsp1286I GDGCHC 3 cut(s) 335, 989, 1364
Bsp1407I TGTACA 3 cut(s) 197, 737, 1704
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 3 cut(s) 382, 1646, 1755
BspANI GGCC 2 cut(s) 731, 1842
BspCNI CTCAG 3 cut(s) 448, 718, 1700
BspLI GGNNCC 4 cut(s) 429, 1047, 1074, 1681
BspOI GCTAGC 1 cut(s) 1386
BspPI GGATC 9 cut(s) 203, 422, 435, 1007, 1017, 1067, 1080, 1497, 1644
BspT104I TTCGAA 1 cut(s) 805
BspTI CTTAAG 1 cut(s) 1426
BsrDI GCAATG 1 cut(s) 457
BsrGI TGTACA 3 cut(s) 197, 737, 1704
BsrI ACTGG 4 cut(s) 1074, 1124, 1339, 1788
BssECI CCNNGG 2 cut(s) 316, 995
BssT1I CCWWGG 2 cut(s) 316, 995
Bst2UI CCWGG 2 cut(s) 864, 1050
Bst4CI ACNGT 3 cut(s) 67, 85, 724
Bst6I CTCTTC 1 cut(s) 440
BstAFI CTTAAG 1 cut(s) 1426
BstAPI GCANNNNNTGC 2 cut(s) 95, 447
BstAUI TGTACA 3 cut(s) 197, 737, 1704
BstBI TTCGAA 1 cut(s) 805
BstC8I GCNNGC 4 cut(s) 589, 1149, 1384, 1844
BstDEI CTNAG 3 cut(s) 456, 705, 1687
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 3 cut(s) 883, 1030, 1237
BstMAI GTCTC 5 cut(s) 579, 1356, 1447, 1454, 1663
BstMWI GCNNNNNNNGC 9 cut(s) 95, 104, 409, 447, 471, 929, 1169, 1178, 1190
BstNI CCWGG 2 cut(s) 864, 1050
BstSCI CCNGG 2 cut(s) 862, 1048
BstSFI CTRYAG 1 cut(s) 1581
BstSLI GKGCMC 1 cut(s) 989
BstV1I GCAGC 5 cut(s) 424, 571, 1102, 1171, 1193
BstX2I RGATCY 5 cut(s) 394, 427, 999, 1072, 1670
BstXI CCANNNNNNTGG 1 cut(s) 727
BstYI RGATCY 5 cut(s) 394, 427, 999, 1072, 1670
Bsu36I CCTNAGG 1 cut(s) 1687
BsuRI GGCC 2 cut(s) 731, 1842
BtgI CCRYGG 1 cut(s) 316
BtgZI GCGATG 1 cut(s) 854
BtsCI GGATG 3 cut(s) 883, 1030, 1237
BtsIMutI CAGTG 4 cut(s) 720, 879, 1067, 1781
Cac8I GCNNGC 4 cut(s) 589, 1149, 1384, 1844
Cfr13I GGNCC 3 cut(s) 730, 866, 1733
CseI GACGC 2 cut(s) 1062, 1109
Csp6I GTAC 4 cut(s) 198, 738, 1299, 1705
CviAII CATG 5 cut(s) 317, 934, 1140, 1439, 1796
CviQI GTAC 4 cut(s) 198, 738, 1299, 1705
DdeI CTNAG 3 cut(s) 456, 705, 1687
DraIII CACNNNGTG 2 cut(s) 447, 854
DriI GACNNNNNGTC 1 cut(s) 1655
EaeI YGGCCR 1 cut(s) 1840
Eam1104I CTCTTC 1 cut(s) 440
Eam1105I GACNNNNNGTC 1 cut(s) 1655
EarI CTCTTC 1 cut(s) 440
Ecl136II GAGCTC 1 cut(s) 1362
Eco130I CCWWGG 2 cut(s) 316, 995
Eco24I GRGCYC 1 cut(s) 1364
Eco47I GGWCC 2 cut(s) 866, 1733
Eco53kI GAGCTC 1 cut(s) 1362
Eco81I CCTNAGG 1 cut(s) 1687
EcoICRI GAGCTC 1 cut(s) 1362
EcoRII CCWGG 2 cut(s) 862, 1048
EcoT14I CCWWGG 2 cut(s) 316, 995
EcoT38I GRGCYC 1 cut(s) 1364
ErhI CCWWGG 2 cut(s) 316, 995
FaeI CATG 5 cut(s) 320, 937, 1143, 1442, 1799
FaqI GGGAC 4 cut(s) 1351, 1662, 1725, 1777
FatI CATG 5 cut(s) 316, 933, 1139, 1438, 1795
FauI CCCGC 2 cut(s) 1639, 1762
FbaI TGATCA 3 cut(s) 514, 1303, 1522
Fnu4HI GCNGC 6 cut(s) 382, 413, 585, 1091, 1182, 1185
FokI GGATG 3 cut(s) 890, 1037, 1224
FriOI GRGCYC 1 cut(s) 1364
Fsp4HI GCNGC 6 cut(s) 382, 413, 585, 1091, 1182, 1185
FspBI CTAG 9 cut(s) 1157, 1194, 1296, 1329, 1374, 1383, 1446, 1466, 1758
GluI GCNGC 6 cut(s) 382, 413, 585, 1091, 1182, 1185
GsaI CCCAGC 1 cut(s) 1120
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 2 cut(s) 731, 1842
HgaI GACGC 2 cut(s) 1062, 1109
Hin1II CATG 5 cut(s) 320, 937, 1143, 1442, 1799
HindIII AAGCTT 1 cut(s) 1145
HinfI GANTC 3 cut(s) 43, 218, 802
HphI GGTGA 2 cut(s) 1004, 1444
Hpy166II GTNNAC 7 cut(s) 198, 310, 857, 987, 1707, 1733, 1781
Hpy188I TCNGA 3 cut(s) 1130, 1540, 1792
Hpy188III TCNNGA 7 cut(s) 222, 420, 1076, 1466, 1640, 1668, 1689
Hpy8I GTNNAC 7 cut(s) 198, 310, 857, 987, 1707, 1733, 1781
HpyAV CCTTC 3 cut(s) 109, 760, 1467
HpyCH4III ACNGT 3 cut(s) 67, 85, 724
HpyCH4IV ACGT 3 cut(s) 388, 1408, 1651
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 104, 409, 447, 471, 929, 1169, 1178, 1190
HpyF3I CTNAG 3 cut(s) 456, 705, 1687
HpySE526I ACGT 3 cut(s) 388, 1408, 1651
Hsp92II CATG 5 cut(s) 320, 937, 1143, 1442, 1799
Ksp22I TGATCA 3 cut(s) 514, 1303, 1522
LmnI GCTCC 3 cut(s) 112, 1045, 1691
Lsp1109I GCAGC 5 cut(s) 424, 571, 1102, 1171, 1193
LweI GCATC 7 cut(s) 632, 911, 1008, 1069, 1150, 1208, 1566
MaeI CTAG 9 cut(s) 1157, 1194, 1296, 1329, 1374, 1383, 1446, 1466, 1758
MaeII ACGT 3 cut(s) 388, 1408, 1651
MaeIII GTNAC 4 cut(s) 925, 1409, 1421, 1592
MfeI CAATTG 2 cut(s) 144, 204
MflI RGATCY 5 cut(s) 394, 427, 999, 1072, 1670
MhlI GDGCHC 3 cut(s) 335, 989, 1364
MlsI TGGCCA 1 cut(s) 1842
MluNI TGGCCA 1 cut(s) 1842
MmeI TCCRAC 3 cut(s) 322, 935, 1316
Mox20I TGGCCA 1 cut(s) 1842
MroXI GAANNNNTTC 1 cut(s) 1032
MscI TGGCCA 1 cut(s) 1842
MseI TTAA 2 cut(s) 1314, 1427
MslI CAYNNNNRTG 3 cut(s) 569, 725, 1242
Msp20I TGGCCA 1 cut(s) 1842
MspA1I CMGCKG 2 cut(s) 923, 1184
MspCI CTTAAG 1 cut(s) 1426
MspR9I CCNGG 2 cut(s) 864, 1050
MunI CAATTG 2 cut(s) 144, 204
MvaI CCWGG 2 cut(s) 864, 1050
MwoI GCNNNNNNNGC 9 cut(s) 95, 104, 409, 447, 471, 929, 1169, 1178, 1190
NcoI CCATGG 1 cut(s) 316
NheI GCTAGC 1 cut(s) 1382
NlaIII CATG 5 cut(s) 320, 937, 1143, 1442, 1799
NlaIV GGNNCC 4 cut(s) 429, 1047, 1074, 1681
NmuCI GTSAC 1 cut(s) 925
NspV TTCGAA 1 cut(s) 805
OliI CACNNNNGTG 2 cut(s) 569, 725
PdmI GAANNNNTTC 1 cut(s) 1032
PfeI GAWTC 3 cut(s) 43, 218, 802
PfoI TCCNGGA 1 cut(s) 862
PkrI GCNGC 6 cut(s) 383, 414, 586, 1092, 1183, 1186
Psp124BI GAGCTC 1 cut(s) 1364
Psp6I CCWGG 2 cut(s) 862, 1048
PspFI CCCAGC 1 cut(s) 1116
PspGI CCWGG 2 cut(s) 862, 1048
PspN4I GGNNCC 4 cut(s) 429, 1047, 1074, 1681
PspPI GGNCC 3 cut(s) 730, 866, 1733
PsuI RGATCY 5 cut(s) 394, 427, 999, 1072, 1670
PvuII CAGCTG 2 cut(s) 923, 1184
RsaI GTAC 4 cut(s) 199, 739, 1300, 1706
RsaNI GTAC 4 cut(s) 198, 738, 1299, 1705
RseI CAYNNNNRTG 3 cut(s) 569, 725, 1242
SacI GAGCTC 1 cut(s) 1364
SaqAI TTAA 2 cut(s) 1314, 1427
SatI GCNGC 6 cut(s) 382, 413, 585, 1091, 1182, 1185
Sau96I GGNCC 3 cut(s) 730, 866, 1733
ScaI AGTACT 1 cut(s) 1300
ScrFI CCNGG 2 cut(s) 864, 1050
SduI GDGCHC 3 cut(s) 335, 989, 1364
SfaNI GCATC 7 cut(s) 632, 911, 1008, 1069, 1150, 1208, 1566
SfcI CTRYAG 1 cut(s) 1581
SfuI TTCGAA 1 cut(s) 805
SinI GGWCC 2 cut(s) 866, 1733
SmiMI CAYNNNNRTG 3 cut(s) 569, 725, 1242
SmlI CTYRAG 1 cut(s) 1426
SmoI CTYRAG 1 cut(s) 1426
SpeI ACTAGT 1 cut(s) 1295
SsiI CCGC 3 cut(s) 382, 1646, 1755
SspI AATATT 1 cut(s) 1774
SspMI CTAG 9 cut(s) 1157, 1194, 1296, 1329, 1374, 1383, 1446, 1466, 1758
SstI GAGCTC 1 cut(s) 1364
StyD4I CCNGG 2 cut(s) 862, 1048
StyI CCWWGG 2 cut(s) 316, 995
TaaI ACNGT 3 cut(s) 67, 85, 724
TaiI ACGT 3 cut(s) 391, 1411, 1654
TaqI TCGA 5 cut(s) 46, 640, 805, 1064, 1262
TatI WGTACW 4 cut(s) 197, 737, 1298, 1704
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 3 cut(s) 43, 218, 802
Tru1I TTAA 2 cut(s) 1314, 1427
Tru9I TTAA 2 cut(s) 1314, 1427
TscAI CASTG 4 cut(s) 727, 879, 1074, 1788
TseFI GTSAC 1 cut(s) 925
TseI GCWGC 5 cut(s) 412, 584, 1090, 1181, 1184
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 7 cut(s) 169, 276, 680, 974, 1041, 1260, 1761
TspGWI ACGGA 1 cut(s) 1230
TspRI CASTG 4 cut(s) 727, 879, 1074, 1788
Vha464I CTTAAG 1 cut(s) 1426
VneI GTGCAC 1 cut(s) 985
VpaK11BI GGWCC 2 cut(s) 866, 1733
XapI RAATTY 1 cut(s) 961
XbaI TCTAGA 1 cut(s) 1465
XcmI CCANNNNNNNNNTGG 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 1032
XspI CTAG 9 cut(s) 1157, 1194, 1296, 1329, 1374, 1383, 1446, 1466, 1758
ZrmI AGTACT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.