Rw7G025270

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014280
Physical Location & Seq
Forward (+)
31626236 .. 31630612
4377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G025270.1

Sequence Viewer

Length: 1866 bp
ATGGCTCGCCGTCATGGATGGGAACTCCCTGCTCACACTTTTCAGGTCGTGGCTATAACCGTTTTTTTCTTGCTAGCGGTTGCATATTATGCCTTCTTTGCTCCCTTTCTTGGAAATGACATCTATGAGTATGTGGCAATTGGTGTATATTCTGCATTGGTGTTTTCTGTATTCATACTTTATGTTCGGTGTACAGCAATTGATCCTGCTGATTCTGGAATACTACTTGAAGCTGACAAGACATTTTCCCACAAAGAAAACAATAACACAGGTATTCCTGGGAACATTTCATTCAGTAATGGAGGACAAGTGGACAGCCATGGTGCAAGTTGGTGCTCAAAAGTTGGAGGTTTCTTCTGTGGTTGTCTTGTAAGAGAAGATTGCCGCAAACGTGAAGATCTCTTGCAATTACAGCAGCAATCTGGAGAGGATCCTCTCTTCTGCACTTTGTGCAATGCTGAGGTCGGCAAGTTCAGCAAACATTGTAGAAGCTGTGATAAATGTGTTGATGGATTTGATCATCATTGTCGGTGGTTAAATAATTGTGTGGGGAGGAAAAATTATATCACATTTGTGTCTCTTATGGCTGCAAGCCTTGTTTGGCTTATTGTTGAATGTGGTGTTGGTATTGCTGTCCTTGTTCGATGCTTTGCTGATAAAAATAGTATGAAAGGGCAGATAGCTGATAGGCTTGGAGTTGGTTTCTCTCAGCCCCCCTTTGCCACTGTGGTGGCCCTATGTACAGCTATTTCCTTCCTTGCCATTTATCCTCTGGCAGAGCTGTTCTTTTTCCACATAATTTTGATTCGAAAGGGTATTACAACCTATGAGTATGTCGTTGCGATGAGAACACAAAGTGAACCTCCTGGACCATCAGTGGATGGAGGCGATCAGCAAAGTATTGCATCTTCTCCAACAAGTTCAGCTGTGACTGCCATGAGTGGAAGAAGCTCTCTTGGAATGAATTTGCCATACAAAGGTGCTTGGTGCACCCCTCCAAGGATCTTTGTGGATCACCAGGATGAAATTATTCCACATTTGGAGCCAGGACGCTTACCATCGACACTGGATCCAGATGCAATACAGCAGCCTGATAAGGCAAAAAAATTACCCCAGCGTCCAGTCCGAATAAGTGCATGGAAGCTTGCTAAACTAGATGCTAATGAGGCAACCAAAGCAGCTGCCAAAGCTAGAGCATCATCATCTGTGCTTCGTCCAATTAGTTCTCAACATCATCCGTATGAAGCTGAATATGTATCGAGCAGTAATGGGTTTAACAACAGAAACACTAGAACTGGGACATCAAAATTATCTCCTATGAGCTCATACCCACCTAGTCGTGCTAGCAGAGAAGATGTTGAAATTGGACGTTACGCTGGTAGTAACTTAAGCAGTCCTCATGTCTCTAGTCTCACCCCTTCTCCTCTAGAGCAGAAAACTTCAAACTTGGATCAGTTCAACCCCATTTATCAGTCATCAAATGATCAATCTCCATTGTCAGAAAAGCAAAGTGAAGCAAAGGTAAATGTAGGACAGATGCCTACAGAAAAAGGTAACTCAATTCTTCAAGGAAATGGGAGATCGTCAGTTTTTTGGGATCAAGAAGCGGGACGTTTTGTCTCATCTTCCAGATCTGGTGGTTCCTCCTCAGGAGCAGAGCTATTGTACACGGGACAATCCATATTTTTTGGTGGACCTGTTCTCAATGAACCACCCGCTAGAGGGACAAGGAATATTGGTTCACTGGCTTCCGAGCATGACAGAGGTTCTACATATCAACAGGGTAGATCACAGAGAGGTGGCCAGCTTCCCGTGTTTGTTCCAAGTGAGTCTGAGAAAAATCAGTTCTCTTCTAGATTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

621

Amino Acids

67.68

Weight (kDa)

8.24

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 145 - 279 5.2e-32 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33640
fragaria_vesca FvH4_5g25830 FvH4_5g25830 FvH4_5g25830 FvH4_5g25830
prunus_persica Prupe.5G007200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0216301
rosa_laevigata RLG00000002583
rosa_multiflora Rmu_co8515551.1_g000001 Rmu_sc0004663.1_g000002
rosa_roxburghii Rroxscaffold_3G00243350
rosa_rugosa Rorug07G0159800
rosa_samantha Rh7AG297100 Rh7BG289300 Rh7CG317400 Rh7DG299600
rosa_wichuraiana Rw7G025270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 77, 385, 1607, 1716
AclWI GGATC 9 cut(s) 197, 425, 438, 1010, 1020, 1064, 1077, 1458, 1605
AcoI YGGCCR 1 cut(s) 1801
AcsI RAATTY 1 cut(s) 964
AdeI CACNNNGTG 2 cut(s) 450, 857
AfaI GTAC 3 cut(s) 193, 742, 1667
AfiI CCNNNNNNNGG 5 cut(s) 110, 977, 999, 1721, 1722
AflII CTTAAG 1 cut(s) 1387
AgsI TTSAA 6 cut(s) 230, 614, 1361, 1443, 1459, 1568
AhdI GACNNNNNGTC 1 cut(s) 1616
AjnI CCWGG 4 cut(s) 277, 865, 1017, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AleI CACNNNNGTG 2 cut(s) 572, 728
AloI GAACNNNNNNTCC 2 cut(s) 1723, 1755
Alw21I GWGCWC 3 cut(s) 338, 992, 1325
Alw26I GTCTC 4 cut(s) 582, 1408, 1415, 1624
Alw44I GTGCAC 1 cut(s) 988
AlwI GGATC 9 cut(s) 197, 425, 438, 1010, 1020, 1064, 1077, 1458, 1605
AoxI GGCC 2 cut(s) 732, 1801
ApaLI GTGCAC 1 cut(s) 988
ApeKI GCWGC 5 cut(s) 415, 587, 1087, 1178, 1181
ApoI RAATTY 1 cut(s) 964
Asp700I GAANNNNTTC 1 cut(s) 1029
AspS9I GGNCC 3 cut(s) 733, 869, 1694
AsuHPI GGTGA 2 cut(s) 1007, 1405
AsuII TTCGAA 1 cut(s) 808
AsuNHI GCTAGC 2 cut(s) 73, 1343
AvaII GGWCC 2 cut(s) 869, 1694
AxyI CCTNAGG 1 cut(s) 1648
BaeGI GKGCMC 1 cut(s) 992
BalI TGGCCA 1 cut(s) 1803
BamHI GGATCC 2 cut(s) 430, 1069
BanII GRGCYC 1 cut(s) 1325
BarI GAAGNNNNNNTAC 2 cut(s) 892, 924
Bbv12I GWGCWC 3 cut(s) 338, 992, 1325
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 5 cut(s) 427, 574, 1099, 1168, 1190
BccI CCATC 5 cut(s) 12, 503, 875, 880, 1066
BciT130I CCWGG 4 cut(s) 279, 867, 1019, 1047
BclI TGATCA 2 cut(s) 517, 1483
BcoDI GTCTC 4 cut(s) 582, 1408, 1415, 1624
BfmI CTRYAG 1 cut(s) 1542
BfrI CTTAAG 1 cut(s) 1387
BglII AGATCT 2 cut(s) 397, 1631
BisI GCNGC 6 cut(s) 385, 416, 588, 1088, 1179, 1182
BlsI GCNGC 6 cut(s) 386, 417, 589, 1089, 1180, 1183
Bme1390I CCNGG 4 cut(s) 279, 867, 1019, 1047
Bme18I GGWCC 2 cut(s) 869, 1694
BmeRI GACNNNNNGTC 1 cut(s) 1616
BmgT120I GGNCC 3 cut(s) 733, 869, 1694
BmiI GGNNCC 4 cut(s) 432, 1044, 1071, 1642
BmrFI CCNGG 4 cut(s) 279, 867, 1019, 1047
BmrI ACTGGG 1 cut(s) 1305
BmsI GCATC 6 cut(s) 635, 914, 1066, 1147, 1205, 1527
BmtI GCTAGC 2 cut(s) 77, 1347
BmuI ACTGGG 1 cut(s) 1305
BpmI CTGGAG 1 cut(s) 444
Bpu10I CCTNAGC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 808
BsaJI CCNNGG 3 cut(s) 278, 319, 998
BsaXI ACNNNNNCTCC 4 cut(s) 294, 324, 1405, 1435
Bsc4I CCNNNNNNNGG 5 cut(s) 110, 977, 999, 1721, 1722
Bse1I ACTGG 4 cut(s) 1071, 1121, 1300, 1749
Bse21I CCTNAGG 1 cut(s) 1648
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 4 cut(s) 279, 867, 1019, 1047
BseDI CCNNGG 3 cut(s) 278, 319, 998
BseGI GGATG 4 cut(s) 23, 886, 1027, 1234
BseLI CCNNNNNNNGG 5 cut(s) 110, 977, 999, 1721, 1722
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 4 cut(s) 450, 722, 1662, 1824
BseNI ACTGG 4 cut(s) 1071, 1121, 1300, 1749
BseRI GAGGAG 2 cut(s) 1413, 1636
BseSI GKGCMC 1 cut(s) 992
BseXI GCAGC 5 cut(s) 427, 574, 1099, 1168, 1190
BseYI CCCAGC 1 cut(s) 1113
BsgI GTGCAG 1 cut(s) 427
BshFI GGCC 2 cut(s) 734, 1803
BsiHKAI GWGCWC 3 cut(s) 338, 992, 1325
BslFI GGGAC 4 cut(s) 1312, 1623, 1686, 1738
BslI CCNNNNNNNGG 5 cut(s) 110, 977, 999, 1721, 1722
BsmAI GTCTC 4 cut(s) 582, 1408, 1415, 1624
BsmFI GGGAC 4 cut(s) 1312, 1623, 1686, 1738
BsnI GGCC 2 cut(s) 734, 1803
Bsp119I TTCGAA 1 cut(s) 808
Bsp1286I GDGCHC 3 cut(s) 338, 992, 1325
Bsp1407I TGTACA 3 cut(s) 191, 740, 1665
Bsp19I CCATGG 1 cut(s) 319
BspACI CCGC 4 cut(s) 77, 385, 1607, 1716
BspANI GGCC 2 cut(s) 734, 1803
BspCNI CTCAG 4 cut(s) 451, 721, 1661, 1825
BspLI GGNNCC 4 cut(s) 432, 1044, 1071, 1642
BspOI GCTAGC 2 cut(s) 77, 1347
BspPI GGATC 9 cut(s) 197, 425, 438, 1010, 1020, 1064, 1077, 1458, 1605
BspT104I TTCGAA 1 cut(s) 808
BspTI CTTAAG 1 cut(s) 1387
BsrDI GCAATG 1 cut(s) 460
BsrGI TGTACA 3 cut(s) 191, 740, 1665
BsrI ACTGG 4 cut(s) 1071, 1121, 1300, 1749
BssECI CCNNGG 3 cut(s) 278, 319, 998
BssT1I CCWWGG 2 cut(s) 319, 998
Bst2UI CCWGG 4 cut(s) 279, 867, 1019, 1047
Bst4CI ACNGT 2 cut(s) 61, 727
Bst6I CTCTTC 2 cut(s) 443, 1855
BstAFI CTTAAG 1 cut(s) 1387
BstAPI GCANNNNNTGC 2 cut(s) 89, 450
BstAUI TGTACA 3 cut(s) 191, 740, 1665
BstBI TTCGAA 1 cut(s) 808
BstC8I GCNNGC 6 cut(s) 7, 75, 592, 1146, 1345, 1805
BstDEI CTNAG 4 cut(s) 459, 708, 1648, 1833
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 4 cut(s) 23, 886, 1027, 1234
BstMAI GTCTC 4 cut(s) 582, 1408, 1415, 1624
BstMWI GCNNNNNNNGC 9 cut(s) 89, 98, 412, 450, 474, 932, 1166, 1175, 1187
BstNI CCWGG 4 cut(s) 279, 867, 1019, 1047
BstSCI CCNGG 4 cut(s) 277, 865, 1017, 1045
BstSFI CTRYAG 1 cut(s) 1542
BstSLI GKGCMC 1 cut(s) 992
BstV1I GCAGC 5 cut(s) 427, 574, 1099, 1168, 1190
BstX2I RGATCY 5 cut(s) 397, 430, 1002, 1069, 1631
BstXI CCANNNNNNTGG 1 cut(s) 730
BstYI RGATCY 5 cut(s) 397, 430, 1002, 1069, 1631
Bsu36I CCTNAGG 1 cut(s) 1648
BsuRI GGCC 2 cut(s) 734, 1803
BtgI CCRYGG 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 857
BtsCI GGATG 4 cut(s) 23, 886, 1027, 1234
BtsIMutI CAGTG 4 cut(s) 723, 882, 1064, 1742
Cac8I GCNNGC 6 cut(s) 7, 75, 592, 1146, 1345, 1805
Cfr13I GGNCC 3 cut(s) 733, 869, 1694
CseI GACGC 2 cut(s) 1059, 1106
Csp6I GTAC 3 cut(s) 192, 741, 1666
CviAII CATG 6 cut(s) 14, 320, 937, 1137, 1400, 1757
CviQI GTAC 3 cut(s) 192, 741, 1666
DdeI CTNAG 4 cut(s) 459, 708, 1648, 1833
DraIII CACNNNGTG 2 cut(s) 450, 857
DriI GACNNNNNGTC 1 cut(s) 1616
EaeI YGGCCR 1 cut(s) 1801
Eam1104I CTCTTC 2 cut(s) 443, 1855
Eam1105I GACNNNNNGTC 1 cut(s) 1616
EarI CTCTTC 2 cut(s) 443, 1855
Ecl136II GAGCTC 1 cut(s) 1323
Eco130I CCWWGG 2 cut(s) 319, 998
Eco24I GRGCYC 1 cut(s) 1325
Eco47I GGWCC 2 cut(s) 869, 1694
Eco53kI GAGCTC 1 cut(s) 1323
Eco81I CCTNAGG 1 cut(s) 1648
EcoICRI GAGCTC 1 cut(s) 1323
EcoRII CCWGG 4 cut(s) 277, 865, 1017, 1045
EcoT14I CCWWGG 2 cut(s) 319, 998
EcoT38I GRGCYC 1 cut(s) 1325
ErhI CCWWGG 2 cut(s) 319, 998
FaeI CATG 6 cut(s) 17, 323, 940, 1140, 1403, 1760
FaqI GGGAC 4 cut(s) 1312, 1623, 1686, 1738
FatI CATG 6 cut(s) 13, 319, 936, 1136, 1399, 1756
FauI CCCGC 2 cut(s) 1600, 1723
FbaI TGATCA 2 cut(s) 517, 1483
Fnu4HI GCNGC 6 cut(s) 385, 416, 588, 1088, 1179, 1182
FokI GGATG 4 cut(s) 30, 893, 1034, 1221
FriOI GRGCYC 1 cut(s) 1325
Fsp4HI GCNGC 6 cut(s) 385, 416, 588, 1088, 1179, 1182
GluI GCNGC 6 cut(s) 385, 416, 588, 1088, 1179, 1182
GsaI CCCAGC 1 cut(s) 1117
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 2 cut(s) 734, 1803
HgaI GACGC 2 cut(s) 1059, 1106
Hin1II CATG 6 cut(s) 17, 323, 940, 1140, 1403, 1760
HindIII AAGCTT 1 cut(s) 1142
HinfI GANTC 3 cut(s) 212, 805, 1829
HphI GGTGA 2 cut(s) 1007, 1405
Hpy166II GTNNAC 7 cut(s) 192, 313, 860, 990, 1668, 1694, 1742
Hpy188I TCNGA 4 cut(s) 1127, 1501, 1753, 1834
Hpy188III TCNNGA 8 cut(s) 216, 423, 1073, 1427, 1601, 1629, 1650, 1854
Hpy8I GTNNAC 7 cut(s) 192, 313, 860, 990, 1668, 1694, 1742
HpyAV CCTTC 3 cut(s) 103, 763, 1428
HpyCH4III ACNGT 2 cut(s) 61, 727
HpyCH4IV ACGT 3 cut(s) 391, 1369, 1612
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 98, 412, 450, 474, 932, 1166, 1175, 1187
HpyF3I CTNAG 4 cut(s) 459, 708, 1648, 1833
HpySE526I ACGT 3 cut(s) 391, 1369, 1612
Hsp92II CATG 6 cut(s) 17, 323, 940, 1140, 1403, 1760
Ksp22I TGATCA 2 cut(s) 517, 1483
LmnI GCTCC 3 cut(s) 106, 1042, 1652
Lsp1109I GCAGC 5 cut(s) 427, 574, 1099, 1168, 1190
LweI GCATC 6 cut(s) 635, 914, 1066, 1147, 1205, 1527
MaeII ACGT 3 cut(s) 391, 1369, 1612
MaeIII GTNAC 4 cut(s) 928, 1370, 1382, 1553
MfeI CAATTG 2 cut(s) 138, 198
MflI RGATCY 5 cut(s) 397, 430, 1002, 1069, 1631
MhlI GDGCHC 3 cut(s) 338, 992, 1325
MlsI TGGCCA 1 cut(s) 1803
MluNI TGGCCA 1 cut(s) 1803
MlyI GAGTC 1 cut(s) 1838
MmeI TCCRAC 2 cut(s) 325, 938
Mox20I TGGCCA 1 cut(s) 1803
MroXI GAANNNNTTC 1 cut(s) 1029
MscI TGGCCA 1 cut(s) 1803
MseI TTAA 3 cut(s) 536, 1275, 1388
MslI CAYNNNNRTG 4 cut(s) 572, 728, 1020, 1239
Msp20I TGGCCA 1 cut(s) 1803
MspA1I CMGCKG 2 cut(s) 926, 1181
MspCI CTTAAG 1 cut(s) 1387
MspR9I CCNGG 4 cut(s) 279, 867, 1019, 1047
MunI CAATTG 2 cut(s) 138, 198
MvaI CCWGG 4 cut(s) 279, 867, 1019, 1047
MwoI GCNNNNNNNGC 9 cut(s) 89, 98, 412, 450, 474, 932, 1166, 1175, 1187
NcoI CCATGG 1 cut(s) 319
NheI GCTAGC 2 cut(s) 73, 1343
NlaIII CATG 6 cut(s) 17, 323, 940, 1140, 1403, 1760
NlaIV GGNNCC 4 cut(s) 432, 1044, 1071, 1642
NmuCI GTSAC 1 cut(s) 928
NspV TTCGAA 1 cut(s) 808
OliI CACNNNNGTG 2 cut(s) 572, 728
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 2 cut(s) 212, 805
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 6 cut(s) 386, 417, 589, 1089, 1180, 1183
PleI GAGTC 1 cut(s) 1837
PpsI GAGTC 1 cut(s) 1837
Psp124BI GAGCTC 1 cut(s) 1325
Psp6I CCWGG 4 cut(s) 277, 865, 1017, 1045
PspFI CCCAGC 1 cut(s) 1113
PspGI CCWGG 4 cut(s) 277, 865, 1017, 1045
PspN4I GGNNCC 4 cut(s) 432, 1044, 1071, 1642
PspPI GGNCC 3 cut(s) 733, 869, 1694
PsuI RGATCY 5 cut(s) 397, 430, 1002, 1069, 1631
PvuII CAGCTG 2 cut(s) 926, 1181
RsaI GTAC 3 cut(s) 193, 742, 1667
RsaNI GTAC 3 cut(s) 192, 741, 1666
RseI CAYNNNNRTG 4 cut(s) 572, 728, 1020, 1239
SacI GAGCTC 1 cut(s) 1325
SaqAI TTAA 3 cut(s) 536, 1275, 1388
SatI GCNGC 6 cut(s) 385, 416, 588, 1088, 1179, 1182
Sau96I GGNCC 3 cut(s) 733, 869, 1694
SchI GAGTC 1 cut(s) 1838
ScrFI CCNGG 4 cut(s) 279, 867, 1019, 1047
SduI GDGCHC 3 cut(s) 338, 992, 1325
SfaNI GCATC 6 cut(s) 635, 914, 1066, 1147, 1205, 1527
SfcI CTRYAG 1 cut(s) 1542
SfuI TTCGAA 1 cut(s) 808
SinI GGWCC 2 cut(s) 869, 1694
SmiMI CAYNNNNRTG 4 cut(s) 572, 728, 1020, 1239
SmlI CTYRAG 1 cut(s) 1387
SmoI CTYRAG 1 cut(s) 1387
SsiI CCGC 4 cut(s) 77, 385, 1607, 1716
SspI AATATT 1 cut(s) 1735
SstI GAGCTC 1 cut(s) 1325
StyD4I CCNGG 4 cut(s) 277, 865, 1017, 1045
StyI CCWWGG 2 cut(s) 319, 998
TaaI ACNGT 2 cut(s) 61, 727
TaiI ACGT 3 cut(s) 394, 1372, 1615
TaqI TCGA 4 cut(s) 643, 808, 1061, 1259
TatI WGTACW 3 cut(s) 191, 740, 1665
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 2 cut(s) 212, 805
Tru1I TTAA 3 cut(s) 536, 1275, 1388
Tru9I TTAA 3 cut(s) 536, 1275, 1388
TscAI CASTG 4 cut(s) 730, 882, 1071, 1749
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 5 cut(s) 415, 587, 1087, 1178, 1181
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 7 cut(s) 163, 279, 683, 977, 1038, 1257, 1722
TspGWI ACGGA 1 cut(s) 1227
TspRI CASTG 4 cut(s) 730, 882, 1071, 1749
Vha464I CTTAAG 1 cut(s) 1387
VneI GTGCAC 1 cut(s) 988
VpaK11BI GGWCC 2 cut(s) 869, 1694
XapI RAATTY 1 cut(s) 964
XbaI TCTAGA 2 cut(s) 1426, 1853
XcmI CCANNNNNNNNNTGG 1 cut(s) 769
XmnI GAANNNNTTC 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.