Rorug07G0159800

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014280
Physical Location & Seq
Forward (+)
12746247 .. 12746549
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0159800.1

Sequence Viewer

Length: 303 bp
ATGGATCAGTTAAGAATGGTACCTAAGGCTGTCATTGGTTTTGTTATTCGTAATTCTGATGCTAATCCTATTGTGGCTGCCTGTAGGGTTATTGGATCGACAAACAGTTTAATAGCTGAGGCAACAGCGTTAAGGGAAGGCTTACACACTGCATATTTGCAAAATCTGCGTCAGATAATTGTGGAAGGCGATTCCAAAACGTTAATTGATTGTATTATGGGAACTGCTACTGTGCCATGGCAATTCAAGCACAAGATAATAATAAAGGATATTCAACAGATTGTACTATTTAGACATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

100

Amino Acids

11.15

Weight (kDa)

9.18

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 9 - 94 2.8e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33640
fragaria_vesca FvH4_5g25830 FvH4_5g25830 FvH4_5g25830 FvH4_5g25830
prunus_persica Prupe.5G007200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0216301
rosa_laevigata RLG00000002583
rosa_multiflora Rmu_co8515551.1_g000001 Rmu_sc0004663.1_g000002
rosa_roxburghii Rroxscaffold_3G00243350
rosa_rugosa Rorug07G0159800
rosa_samantha Rh7AG297100 Rh7BG289300 Rh7CG317400 Rh7DG299600
rosa_wichuraiana Rw7G025270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AclI AACGTT 1 cut(s) 200
AclWI GGATC 2 cut(s) 12, 103
AfaI GTAC 2 cut(s) 21, 285
AgsI TTSAA 2 cut(s) 247, 275
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
AlwI GGATC 2 cut(s) 12, 103
ApeKI GCWGC 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
Asp718I GGTACC 1 cut(s) 19
AxyI CCTNAGG 1 cut(s) 24
BanI GGYRCC 1 cut(s) 19
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 82
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 21
BmsI GCATC 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 236
Bse21I CCTNAGG 1 cut(s) 24
Bse8I GATNNNNATC 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 236
BseJI GATNNNNATC 1 cut(s) 63
BseMII CTCAG 1 cut(s) 108
BseXI GCAGC 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 4, 95
Bsp19I CCATGG 1 cut(s) 236
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 21
BspPI GGATC 2 cut(s) 12, 103
BspT107I GGYRCC 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 2 cut(s) 4, 95
BssT1I CCWWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 107, 232
BstAPI GCANNNNNTGC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 24, 117
BstDSI CCRYGG 1 cut(s) 236
BstKTI GATC 2 cut(s) 7, 98
BstMBI GATC 2 cut(s) 4, 95
BstMWI GCNNNNNNNGC 2 cut(s) 166, 247
BstSFI CTRYAG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 20, 284
CviAII CATG 1 cut(s) 237
CviJI RGCY 4 cut(s) 29, 77, 116, 141
CviKI_1 RGCY 4 cut(s) 29, 77, 116, 141
CviQI GTAC 2 cut(s) 20, 284
DdeI CTNAG 2 cut(s) 24, 117
DpnI GATC 2 cut(s) 6, 97
DpnII GATC 2 cut(s) 4, 95
Eco130I CCWWGG 1 cut(s) 236
Eco81I CCTNAGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 1 cut(s) 240
FaiI YATR 4 cut(s) 154, 218, 238, 297
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
HgaI GACGC 1 cut(s) 158
Hin1II CATG 1 cut(s) 240
HinfI GANTC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 58, 174
HpyAV CCTTC 2 cut(s) 131, 179
HpyCH4III ACNGT 2 cut(s) 107, 232
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 2 cut(s) 152, 160
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 247
HpyF3I CTNAG 2 cut(s) 24, 117
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 1 cut(s) 240
KpnI GGTACC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 4, 95
LpnPI CCDG 1 cut(s) 94
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 49
MaeII ACGT 1 cut(s) 200
MalI GATC 2 cut(s) 6, 97
MboI GATC 2 cut(s) 4, 95
MluCI AATT 4 cut(s) 52, 177, 204, 242
MnlI CCTC 1 cut(s) 112
MseI TTAA 4 cut(s) 11, 110, 131, 203
MwoI GCNNNNNNNGC 2 cut(s) 166, 247
NcoI CCATGG 1 cut(s) 236
NdeII GATC 2 cut(s) 4, 95
NlaIII CATG 1 cut(s) 240
NlaIV GGNNCC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 1 cut(s) 79
Psp1406I AACGTT 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 21
RsaI GTAC 2 cut(s) 21, 285
RsaNI GTAC 2 cut(s) 20, 284
SaqAI TTAA 4 cut(s) 11, 110, 131, 203
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 4, 95
SetI ASST 3 cut(s) 25, 118, 203
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 82
SgeI CNNG 4 cut(s) 93, 249, 259, 265
Sse9I AATT 4 cut(s) 52, 177, 204, 242
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 2 cut(s) 107, 232
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 98
TasI AATT 4 cut(s) 52, 177, 204, 242
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 4 cut(s) 11, 110, 131, 203
Tru9I TTAA 4 cut(s) 11, 110, 131, 203
TscAI CASTG 1 cut(s) 154
TseI GCWGC 1 cut(s) 77
TspRI CASTG 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.