Rroxscaffold_3G00243350

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014280
Physical Location & Seq
Reverse (-)
35871463 .. 35876205
4743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243350.1

Sequence Viewer

Length: 1746 bp
ATGGCTCGCCGTCATGGATGGGAACTCCCTGCTCACACTCTTCAGGTCGTGGCTATAACCGTTTTTTTCTTGCTAACTGTTGCATATTATGCCTTCTTTGCTCCCTTTCTTGGAAATGACATCTATGAGTACGTGGCAATTGGTGTATATTCCGCGTTGGTGTTTTCTGTATTCATACTTTATGTTCGGTGTACAGCAATTGATCCTGCTGATCCTGGAATACTACTTGAAGCTGACAAGACATTTTCCCACAAAGAAAACAATAACACAGGGAACATTTCATTCAGTAATGGAGGACAAGTGGACAGCCATGGTGCAAGTTGGTGCTCAAAAGTTGGAGGTTTCTTCTGTGGTTGTCTTGTAAGAGAAGATTGCCGCAAACGTGAAGAGCTCTTGCAATTACAGCAGCAATCTGGAGAGGATCCTCTCTTCTGCACTTTGTGCAATGCTGAGGTCGGCAAGTTCAGCAAACATTGTAGAAGCTGTGATAAATGTGTTGATGGATTTGATCATCATTGTCGGCTTATTGTTGAATGTGGTGTTGGTATTGCTGTCCTTGTTCGATGCTTTGCTGATAAAAATAGTATGAAAAGGCAGATAGCTGATAGGCTTGGAGTTGGTTTCTCTCAGCCCCCCTTTGCCACTGTGGTGGGTATTACAACCTATGAGTATGTCATTGCGATGAGAACACAAAGTGAACCTCCTGGACCATCAGTGGATGGAGGCGATCAGCAAAGTATTGCATCTTCACCAACAAGTTCAGCTGTGACTGCCATAAGTGGAAGAAGCTCTCTTGGAATGAATTTGCCATACAAAGGTGCTTGGTGCACCCCTCCAAGGATCTTTGTGGATCACCAGATGCAGGATGAAATTATTCCACATTTGGAGCCAGGACGCTTACCATCGACACTGGATCCAGATGCGATACAGCAGCCTGATAAGGCAAAAAAATTACCCCAGCGTCCAGTCCGAATAAGTGCATGGAAGCTTGCTAAACTAGATGCTAATGAGGCAACCAAAGCAGCTGCCAAAGCTAGAGCATCATCATCTGTGCTTCGTCCAATTAGTTCTCAACATCATCCGTATGAAGCTGAATATGTATCGAGTAGCAATGTGAGTGGAAGAAGTAGTCCAACTAGTACTGATCAGGGGTTTAACAACAGAAACACTAGAACTGGGACATCAAAATTATCTCCTATGAGCTCATACCCACCTAGTCGTGCTAGCAGAGAAGATGTTGAAATTGGACGTTACGCTGGTAGTAACTTGAGCAGTCCTCATGTCTCTAGTCTCACCCCTTCTCCTCTAGAGCAGAAAACTTCAAACTTGGATCAGTTCAACCCCATGTATCAGTCATCAAATGATCAATCTCCATTGTCAGAAAAGCAAAGTGAAGCAAAGGTAAATGTAGGACAGATGCCTACAGAAAAAGGTAACTCAAGTCTTCAGGGAAATAAGAGATTGTCAGTTTTTTGGGATCAAGAAGCGGGACGTTTTGTCTCATCTTCCAGATCTGGGGGTTCCTCCTCAGGAGCAGAGCTATTGTACACGGGACAATCCATATTTTTTGGTGGACCTGTTCTCAATGAACCACCCGCTAGAGGGACAAGGAATATTGGTTCACTGGCTTCCGAGCATGACAGAGGTTCTACATATCAACAGGGTAGATCACAGAGAGGTGGCCAGCTTCCCGTGTTTGTTCCAAGTGATTCTGAGAAAAATCAGTTCTCTTCTAGATTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

581

Amino Acids

63.19

Weight (kDa)

8.12

Isoelectric Point (pI)

57.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 142 - 179 4.1e-09 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33640
fragaria_vesca FvH4_5g25830 FvH4_5g25830 FvH4_5g25830 FvH4_5g25830
prunus_persica Prupe.5G007200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0216301
rosa_laevigata RLG00000002583
rosa_multiflora Rmu_co8515551.1_g000001 Rmu_sc0004663.1_g000002
rosa_roxburghii Rroxscaffold_3G00243350
rosa_rugosa Rorug07G0159800
rosa_samantha Rh7AG297100 Rh7BG289300 Rh7CG317400 Rh7DG299600
rosa_wichuraiana Rw7G025270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 155
AciI CCGC 4 cut(s) 153, 376, 1487, 1596
AcoI YGGCCR 1 cut(s) 1681
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 2 cut(s) 26, 1430
AdeI CACNNNGTG 2 cut(s) 441, 695
AfaI GTAC 4 cut(s) 131, 193, 1141, 1547
AfiI CCNNNNNNNGG 7 cut(s) 110, 815, 837, 862, 1515, 1601, 1602
AgsI TTSAA 5 cut(s) 230, 533, 1241, 1323, 1339
AhdI GACNNNNNGTC 1 cut(s) 1496
AhlI ACTAGT 1 cut(s) 1136
AjnI CCWGG 3 cut(s) 214, 703, 889
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AleI CACNNNNGTG 1 cut(s) 647
AloI GAACNNNNNNTCC 2 cut(s) 1603, 1635
Alw21I GWGCWC 4 cut(s) 329, 393, 830, 1205
Alw26I GTCTC 3 cut(s) 1288, 1295, 1504
Alw44I GTGCAC 1 cut(s) 826
AoxI GGCC 1 cut(s) 1681
ApaLI GTGCAC 1 cut(s) 826
ApeKI GCWGC 4 cut(s) 406, 931, 1022, 1025
ApoI RAATTY 1 cut(s) 802
Asp700I GAANNNNTTC 1 cut(s) 873
AspS9I GGNCC 2 cut(s) 707, 1574
AsuHPI GGTGA 3 cut(s) 741, 845, 1285
AsuNHI GCTAGC 1 cut(s) 1223
AvaII GGWCC 2 cut(s) 707, 1574
AxyI CCTNAGG 1 cut(s) 1528
BaeGI GKGCMC 1 cut(s) 830
BalI TGGCCA 1 cut(s) 1683
BamHI GGATCC 2 cut(s) 421, 913
BanII GRGCYC 2 cut(s) 393, 1205
BarI GAAGNNNNNNTAC 2 cut(s) 730, 762
BbsI GAAGAC 1 cut(s) 1436
Bbv12I GWGCWC 4 cut(s) 329, 393, 830, 1205
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 4 cut(s) 418, 943, 1012, 1034
BccI CCATC 5 cut(s) 12, 494, 713, 718, 910
BciT130I CCWGG 3 cut(s) 216, 705, 891
BclI TGATCA 3 cut(s) 508, 1144, 1363
BcoDI GTCTC 3 cut(s) 1288, 1295, 1504
BcuI ACTAGT 1 cut(s) 1136
BfmI CTRYAG 1 cut(s) 1422
BglII AGATCT 1 cut(s) 1511
BisI GCNGC 5 cut(s) 376, 407, 932, 1023, 1026
BlsI GCNGC 5 cut(s) 377, 408, 933, 1024, 1027
BmcAI AGTACT 1 cut(s) 1141
Bme1390I CCNGG 3 cut(s) 216, 705, 891
Bme18I GGWCC 2 cut(s) 707, 1574
BmeRI GACNNNNNGTC 1 cut(s) 1496
BmgT120I GGNCC 2 cut(s) 707, 1574
BmiI GGNNCC 4 cut(s) 423, 888, 915, 1522
BmrFI CCNGG 3 cut(s) 216, 705, 891
BmrI ACTGGG 1 cut(s) 1185
BmsI GCATC 7 cut(s) 554, 752, 849, 910, 991, 1049, 1407
BmtI GCTAGC 1 cut(s) 1227
BmuI ACTGGG 1 cut(s) 1185
BpiI GAAGAC 1 cut(s) 1436
BplI GAGNNNNNCTC 2 cut(s) 1261, 1293
BpmI CTGGAG 1 cut(s) 435
Bpu10I CCTNAGC 1 cut(s) 450
BpuEI CTTGAG 2 cut(s) 1288, 1423
BsaAI YACGTR 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 310, 836
BsaXI ACNNNNNCTCC 4 cut(s) 285, 315, 1285, 1315
Bsc4I CCNNNNNNNGG 7 cut(s) 110, 815, 837, 862, 1515, 1601, 1602
Bse1I ACTGG 4 cut(s) 915, 965, 1180, 1629
Bse21I CCTNAGG 1 cut(s) 1528
Bse3DI GCAATG 3 cut(s) 451, 675, 1117
BseBI CCWGG 3 cut(s) 216, 705, 891
BseDI CCNNGG 2 cut(s) 310, 836
BseGI GGATG 4 cut(s) 23, 724, 871, 1078
BseLI CCNNNNNNNGG 7 cut(s) 110, 815, 837, 862, 1515, 1601, 1602
BseMI GCAATG 3 cut(s) 451, 675, 1117
BseMII CTCAG 4 cut(s) 441, 641, 1542, 1704
BseNI ACTGG 4 cut(s) 915, 965, 1180, 1629
BseRI GAGGAG 2 cut(s) 1293, 1516
BseSI GKGCMC 1 cut(s) 830
BseXI GCAGC 4 cut(s) 418, 943, 1012, 1034
BseYI CCCAGC 1 cut(s) 957
BsgI GTGCAG 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 1683
BsiHKAI GWGCWC 4 cut(s) 329, 393, 830, 1205
BslFI GGGAC 4 cut(s) 1192, 1503, 1566, 1618
BslI CCNNNNNNNGG 7 cut(s) 110, 815, 837, 862, 1515, 1601, 1602
BsmAI GTCTC 3 cut(s) 1288, 1295, 1504
BsmFI GGGAC 4 cut(s) 1192, 1503, 1566, 1618
BsnI GGCC 1 cut(s) 1683
Bsp1286I GDGCHC 4 cut(s) 329, 393, 830, 1205
Bsp1407I TGTACA 2 cut(s) 191, 1545
Bsp19I CCATGG 1 cut(s) 310
BspACI CCGC 4 cut(s) 153, 376, 1487, 1596
BspANI GGCC 1 cut(s) 1683
BspCNI CTCAG 4 cut(s) 442, 640, 1541, 1705
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 4 cut(s) 423, 888, 915, 1522
BspOI GCTAGC 1 cut(s) 1227
BspQI GCTCTTC 1 cut(s) 381
BsrDI GCAATG 3 cut(s) 451, 675, 1117
BsrGI TGTACA 2 cut(s) 191, 1545
BsrI ACTGG 4 cut(s) 915, 965, 1180, 1629
BssECI CCNNGG 2 cut(s) 310, 836
BssT1I CCWWGG 2 cut(s) 310, 836
Bst2UI CCWGG 3 cut(s) 216, 705, 891
Bst4CI ACNGT 3 cut(s) 61, 79, 646
Bst6I CTCTTC 4 cut(s) 45, 381, 434, 1735
BstAPI GCANNNNNTGC 2 cut(s) 89, 441
BstAUI TGTACA 2 cut(s) 191, 1545
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 4 cut(s) 7, 990, 1225, 1685
BstDEI CTNAG 4 cut(s) 450, 627, 1528, 1713
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 4 cut(s) 23, 724, 871, 1078
BstFNI CGCG 1 cut(s) 155
BstMAI GTCTC 3 cut(s) 1288, 1295, 1504
BstMWI GCNNNNNNNGC 9 cut(s) 89, 98, 403, 441, 465, 770, 1010, 1019, 1031
BstNI CCWGG 3 cut(s) 216, 705, 891
BstSCI CCNGG 3 cut(s) 214, 703, 889
BstSFI CTRYAG 1 cut(s) 1422
BstSLI GKGCMC 1 cut(s) 830
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 4 cut(s) 418, 943, 1012, 1034
BstV2I GAAGAC 1 cut(s) 1436
BstX2I RGATCY 4 cut(s) 421, 840, 913, 1511
BstXI CCANNNNNNTGG 1 cut(s) 649
BstYI RGATCY 4 cut(s) 421, 840, 913, 1511
Bsu36I CCTNAGG 1 cut(s) 1528
BsuRI GGCC 1 cut(s) 1683
BtgI CCRYGG 1 cut(s) 310
BtgZI GCGATG 1 cut(s) 695
BtsCI GGATG 4 cut(s) 23, 724, 871, 1078
BtsIMutI CAGTG 4 cut(s) 642, 720, 908, 1622
Cac8I GCNNGC 4 cut(s) 7, 990, 1225, 1685
Cfr13I GGNCC 2 cut(s) 707, 1574
CseI GACGC 2 cut(s) 903, 950
Csp6I GTAC 4 cut(s) 130, 192, 1140, 1546
CspCI CAANNNNNGTGG 2 cut(s) 1099, 1134
CviAII CATG 6 cut(s) 14, 311, 981, 1280, 1345, 1637
CviQI GTAC 4 cut(s) 130, 192, 1140, 1546
DdeI CTNAG 4 cut(s) 450, 627, 1528, 1713
DraIII CACNNNGTG 2 cut(s) 441, 695
DriI GACNNNNNGTC 1 cut(s) 1496
EaeI YGGCCR 1 cut(s) 1681
Eam1104I CTCTTC 4 cut(s) 45, 381, 434, 1735
Eam1105I GACNNNNNGTC 1 cut(s) 1496
EarI CTCTTC 4 cut(s) 45, 381, 434, 1735
Ecl136II GAGCTC 2 cut(s) 391, 1203
Eco130I CCWWGG 2 cut(s) 310, 836
Eco24I GRGCYC 2 cut(s) 393, 1205
Eco47I GGWCC 2 cut(s) 707, 1574
Eco53kI GAGCTC 2 cut(s) 391, 1203
Eco57I CTGAAG 2 cut(s) 26, 1430
Eco81I CCTNAGG 1 cut(s) 1528
EcoICRI GAGCTC 2 cut(s) 391, 1203
EcoRII CCWGG 3 cut(s) 214, 703, 889
EcoT14I CCWWGG 2 cut(s) 310, 836
EcoT38I GRGCYC 2 cut(s) 393, 1205
ErhI CCWWGG 2 cut(s) 310, 836
FaeI CATG 6 cut(s) 17, 314, 984, 1283, 1348, 1640
FaqI GGGAC 4 cut(s) 1192, 1503, 1566, 1618
FatI CATG 6 cut(s) 13, 310, 980, 1279, 1344, 1636
FauI CCCGC 2 cut(s) 1480, 1603
FbaI TGATCA 3 cut(s) 508, 1144, 1363
Fnu4HI GCNGC 5 cut(s) 376, 407, 932, 1023, 1026
FokI GGATG 4 cut(s) 30, 731, 878, 1065
FriOI GRGCYC 2 cut(s) 393, 1205
Fsp4HI GCNGC 5 cut(s) 376, 407, 932, 1023, 1026
GluI GCNGC 5 cut(s) 376, 407, 932, 1023, 1026
GsaI CCCAGC 1 cut(s) 961
GsuI CTGGAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 1683
HgaI GACGC 2 cut(s) 903, 950
Hin1II CATG 6 cut(s) 17, 314, 984, 1283, 1348, 1640
HindIII AAGCTT 1 cut(s) 986
HinfI GANTC 1 cut(s) 1709
HphI GGTGA 3 cut(s) 741, 845, 1285
Hpy166II GTNNAC 7 cut(s) 192, 304, 698, 828, 1548, 1574, 1622
Hpy188I TCNGA 4 cut(s) 971, 1381, 1633, 1714
Hpy188III TCNNGA 7 cut(s) 414, 917, 1307, 1481, 1509, 1530, 1734
Hpy8I GTNNAC 7 cut(s) 192, 304, 698, 828, 1548, 1574, 1622
HpyAV CCTTC 2 cut(s) 103, 1308
HpyCH4III ACNGT 3 cut(s) 61, 79, 646
HpyCH4IV ACGT 4 cut(s) 132, 382, 1249, 1492
HpyCH4V TGCA 9 cut(s) 83, 317, 397, 435, 444, 743, 828, 862, 980
HpyF10VI GCNNNNNNNGC 9 cut(s) 89, 98, 403, 441, 465, 770, 1010, 1019, 1031
HpyF3I CTNAG 4 cut(s) 450, 627, 1528, 1713
HpySE526I ACGT 4 cut(s) 132, 382, 1249, 1492
Hsp92II CATG 6 cut(s) 17, 314, 984, 1283, 1348, 1640
Ksp22I TGATCA 3 cut(s) 508, 1144, 1363
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 3 cut(s) 106, 886, 1532
Lsp1109I GCAGC 4 cut(s) 418, 943, 1012, 1034
LweI GCATC 7 cut(s) 554, 752, 849, 910, 991, 1049, 1407
MaeII ACGT 4 cut(s) 132, 382, 1249, 1492
MaeIII GTNAC 4 cut(s) 766, 1250, 1262, 1433
MfeI CAATTG 2 cut(s) 138, 198
MflI RGATCY 4 cut(s) 421, 840, 913, 1511
MhlI GDGCHC 4 cut(s) 329, 393, 830, 1205
MlsI TGGCCA 1 cut(s) 1683
MluCI AATT 9 cut(s) 138, 198, 398, 802, 870, 950, 1062, 1187, 1242
MluNI TGGCCA 1 cut(s) 1683
MmeI TCCRAC 2 cut(s) 316, 1157
Mox20I TGGCCA 1 cut(s) 1683
MroXI GAANNNNTTC 1 cut(s) 873
MscI TGGCCA 1 cut(s) 1683
MseI TTAA 1 cut(s) 1155
MslI CAYNNNNRTG 3 cut(s) 647, 680, 1083
Msp20I TGGCCA 1 cut(s) 1683
MspA1I CMGCKG 2 cut(s) 764, 1025
MspR9I CCNGG 3 cut(s) 216, 705, 891
MunI CAATTG 2 cut(s) 138, 198
MvaI CCWGG 3 cut(s) 216, 705, 891
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 9 cut(s) 89, 98, 403, 441, 465, 770, 1010, 1019, 1031
NcoI CCATGG 1 cut(s) 310
NheI GCTAGC 1 cut(s) 1223
NlaIII CATG 6 cut(s) 17, 314, 984, 1283, 1348, 1640
NlaIV GGNNCC 4 cut(s) 423, 888, 915, 1522
NmuCI GTSAC 1 cut(s) 766
OliI CACNNNNGTG 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 1 cut(s) 1709
PfoI TCCNGGA 2 cut(s) 214, 703
PkrI GCNGC 5 cut(s) 377, 408, 933, 1024, 1027
Ppu21I YACGTR 1 cut(s) 133
Psp124BI GAGCTC 2 cut(s) 393, 1205
Psp6I CCWGG 3 cut(s) 214, 703, 889
PspFI CCCAGC 1 cut(s) 957
PspGI CCWGG 3 cut(s) 214, 703, 889
PspN4I GGNNCC 4 cut(s) 423, 888, 915, 1522
PspPI GGNCC 2 cut(s) 707, 1574
PsuI RGATCY 4 cut(s) 421, 840, 913, 1511
PvuII CAGCTG 2 cut(s) 764, 1025
RsaI GTAC 4 cut(s) 131, 193, 1141, 1547
RsaNI GTAC 4 cut(s) 130, 192, 1140, 1546
RseI CAYNNNNRTG 3 cut(s) 647, 680, 1083
SacI GAGCTC 2 cut(s) 393, 1205
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 1155
SatI GCNGC 5 cut(s) 376, 407, 932, 1023, 1026
Sau96I GGNCC 2 cut(s) 707, 1574
ScaI AGTACT 1 cut(s) 1141
ScrFI CCNGG 3 cut(s) 216, 705, 891
SduI GDGCHC 4 cut(s) 329, 393, 830, 1205
SfaNI GCATC 7 cut(s) 554, 752, 849, 910, 991, 1049, 1407
SfcI CTRYAG 1 cut(s) 1422
SinI GGWCC 2 cut(s) 707, 1574
SmiMI CAYNNNNRTG 3 cut(s) 647, 680, 1083
SmlI CTYRAG 2 cut(s) 1267, 1438
SmoI CTYRAG 2 cut(s) 1267, 1438
SpeI ACTAGT 1 cut(s) 1136
Sse9I AATT 9 cut(s) 138, 198, 398, 802, 870, 950, 1062, 1187, 1242
SsiI CCGC 4 cut(s) 153, 376, 1487, 1596
SspI AATATT 1 cut(s) 1615
SstI GAGCTC 2 cut(s) 393, 1205
StyD4I CCNGG 3 cut(s) 214, 703, 889
StyI CCWWGG 2 cut(s) 310, 836
TaaI ACNGT 3 cut(s) 61, 79, 646
TaiI ACGT 4 cut(s) 135, 385, 1252, 1495
TaqI TCGA 3 cut(s) 562, 905, 1103
TasI AATT 9 cut(s) 138, 198, 398, 802, 870, 950, 1062, 1187, 1242
TatI WGTACW 3 cut(s) 191, 1139, 1545
TauI GCSGC 1 cut(s) 378
TfiI GAWTC 1 cut(s) 1709
Tru1I TTAA 1 cut(s) 1155
Tru9I TTAA 1 cut(s) 1155
TscAI CASTG 4 cut(s) 649, 720, 915, 1629
TseFI GTSAC 1 cut(s) 766
TseI GCWGC 4 cut(s) 406, 931, 1022, 1025
Tsp45I GTSAC 1 cut(s) 766
TspDTI ATGAA 7 cut(s) 163, 270, 602, 815, 882, 1101, 1602
TspGWI ACGGA 1 cut(s) 1071
TspRI CASTG 4 cut(s) 649, 720, 915, 1629
VneI GTGCAC 1 cut(s) 826
VpaK11BI GGWCC 2 cut(s) 707, 1574
XapI RAATTY 1 cut(s) 802
XbaI TCTAGA 2 cut(s) 1306, 1733
XmnI GAANNNNTTC 1 cut(s) 873
ZrmI AGTACT 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.