Rh7DG299600

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014280
Physical Location & Seq
Forward (+)
34292392 .. 34297544
5153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG299600.1

Sequence Viewer

Length: 1656 bp
ATGATCGAACCTTATGTGCTTTTATTAGGGAACATTTCATTCAGTAATGGAGGACAAGTGGACAGCCATGGTGCAAGTTGGTGCTCAAAAGTTGGAGGTTTCTTCTGTGGTTGTCTTGTAAGAGAAGATTGCCGCAAACGTGAAGATCTCTTGCAATTACAGCAGCAATCTGGAGAGGATCCTCTCTTCTGCACTTTGTGCAATGCTGAGGTCGGCAAGTTCAGCAAACATTGTAGAAGCTGTGATAAATGTGTTGATGGATTTGATCATCATTGTCGGTGGCTAAATAATTGTGTGGGGAGGAAAAATTATATCACATTTGTGTCTCTTATGGCTGCAAGCCTTGTTTGGCTTATTGTTGAATGTGGTGTTGGTATTGCTGTCCTTGTTCGATGCTTTGCTGATAAAAATAGTATGAAAGGGCAGATAGCTGATAGGCTTGGAGTTGGTTTCTCTCAGCCCCCCTTTGCCACTGTGGTGGCCCTATGTACAGCTATTTCCTTCCTTGCCATTTATCCTCTGGCAGAGCTGTTCTTTTTCCACATAATTTTGATTCGAAAGGGTATTACAACCTATGAGTATGTCGTTGCGATGAGAACACAAAGTGAACCTCCTGGACCATCAGTGGATGGAGGCGATCAGCAAAGTATTGCATCTTCTCCAACAAGTTCAGCTGTGACTGCCATGAGTGGAAGAAGCTCTCTTGGAATGAATTTGCCATACAAAGGTGCTTGGTGCACCCCTCCAAGGATCTTTGTGGATCACCAGATGCAGGATGAAATTATTCCACATTTGGAGCCAGGACGCTTACCATCGACACTGGATCCAGATGCAATACAGCAGCCTGATAAGGCAAAAAAATTACCCCAGCGTCCAGTCCGAATAAGTGCATGGAAGCTTGCTAAACTAGATGCTAATGAGGCAACCAAAGCAGCTGCCAAAGCTAGAGCATCATCATCTGTGCTTCGTCCAATTAGTTCTCAACATCATCCGTATGAAGCTGAATATGTATCGAGCAGTAATGTGAGTGGAAGAAGTAGTCCAACTAGTACTGATCAGGGGTTTAACAACAGAAACACTAGAACTGGGACATCAAAATTATCTCCTATGAGCTCATACCCACCTAGTCGTGCTAGCAGAGAAGATGTTGAAATTGGACGTTACGGTGGTAGTAACTTAAGCAGTCCTCATGTCTCTAGTCTCACCCCTTCTCCTCTAGAGCAGAAAACTTCAAACTTGGATCAGTTCAACCCCATTTATCAGTCATCAAATGATCAATCTCCATTGTCAGAAAAGCAAAGTGAAGCAAAGGTAAATGTAGGACAGATGCCTACAGAAAAAGGTAACTCAATTCTTCAAGGAAATGGGAGATCGTCAGTTTTTTGGGATCAAGAAGCGGGACGTTTTGTCTCATCTTCCAGATCTGGTGGTTCCTCCTCAGGAGCAGAGCTATTGTACACGGGACAATCCATATTTTTTGGTGGACCTGTTCTCAATGAACCACCCGCTAGAGGGACAAGGAATATTGGTTCACTGGCTTCCGAGCATGACAGAGGTTCTACATATCAACAGGGTAGATCACAGAGAGGTGGCCAGCTTCCCGTGTTTGTTCCAAGTGAGTCTGAGAAAAATCAGTTCTCTTCTAGATTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

551

Amino Acids

59.81

Weight (kDa)

8.54

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 61 - 195 4.2e-32 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014280)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33640
fragaria_vesca FvH4_5g25830 FvH4_5g25830 FvH4_5g25830 FvH4_5g25830
prunus_persica Prupe.5G007200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0216301
rosa_laevigata RLG00000002583
rosa_multiflora Rmu_co8515551.1_g000001 Rmu_sc0004663.1_g000002
rosa_roxburghii Rroxscaffold_3G00243350
rosa_rugosa Rorug07G0159800
rosa_samantha Rh7AG297100 Rh7BG289300 Rh7CG317400 Rh7DG299600
rosa_wichuraiana Rw7G025270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 133, 1397, 1506
AclWI GGATC 8 cut(s) 173, 186, 758, 768, 818, 831, 1248, 1395
AcoI YGGCCR 1 cut(s) 1591
AcsI RAATTY 1 cut(s) 712
AdeI CACNNNGTG 2 cut(s) 198, 605
AfaI GTAC 3 cut(s) 490, 1051, 1457
AfiI CCNNNNNNNGG 5 cut(s) 725, 747, 772, 1511, 1512
AflII CTTAAG 1 cut(s) 1177
AgsI TTSAA 5 cut(s) 362, 1151, 1233, 1249, 1358
AhdI GACNNNNNGTC 1 cut(s) 1406
AhlI ACTAGT 1 cut(s) 1046
AjnI CCWGG 2 cut(s) 613, 799
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AleI CACNNNNGTG 2 cut(s) 320, 476
AloI GAACNNNNNNTCC 2 cut(s) 1513, 1545
Alw21I GWGCWC 3 cut(s) 86, 740, 1115
Alw26I GTCTC 4 cut(s) 330, 1198, 1205, 1414
Alw44I GTGCAC 1 cut(s) 736
AlwI GGATC 8 cut(s) 173, 186, 758, 768, 818, 831, 1248, 1395
AoxI GGCC 2 cut(s) 480, 1591
ApaLI GTGCAC 1 cut(s) 736
ApeKI GCWGC 5 cut(s) 163, 335, 841, 932, 935
ApoI RAATTY 1 cut(s) 712
Asp700I GAANNNNTTC 1 cut(s) 783
AspS9I GGNCC 3 cut(s) 481, 617, 1484
AsuHPI GGTGA 2 cut(s) 755, 1195
AsuII TTCGAA 1 cut(s) 556
AsuNHI GCTAGC 1 cut(s) 1133
AvaII GGWCC 2 cut(s) 617, 1484
AxyI CCTNAGG 1 cut(s) 1438
BaeGI GKGCMC 1 cut(s) 740
BalI TGGCCA 1 cut(s) 1593
BamHI GGATCC 2 cut(s) 178, 823
BanII GRGCYC 1 cut(s) 1115
BarI GAAGNNNNNNTAC 2 cut(s) 640, 672
Bbv12I GWGCWC 3 cut(s) 86, 740, 1115
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 5 cut(s) 175, 322, 853, 922, 944
BccI CCATC 4 cut(s) 251, 623, 628, 820
BciT130I CCWGG 2 cut(s) 615, 801
BclI TGATCA 3 cut(s) 265, 1054, 1273
BcoDI GTCTC 4 cut(s) 330, 1198, 1205, 1414
BcuI ACTAGT 1 cut(s) 1046
BfmI CTRYAG 1 cut(s) 1332
BfrI CTTAAG 1 cut(s) 1177
BglII AGATCT 2 cut(s) 145, 1421
BisI GCNGC 6 cut(s) 133, 164, 336, 842, 933, 936
BlsI GCNGC 6 cut(s) 134, 165, 337, 843, 934, 937
BmcAI AGTACT 1 cut(s) 1051
Bme1390I CCNGG 2 cut(s) 615, 801
Bme18I GGWCC 2 cut(s) 617, 1484
BmeRI GACNNNNNGTC 1 cut(s) 1406
BmgT120I GGNCC 3 cut(s) 481, 617, 1484
BmiI GGNNCC 4 cut(s) 180, 798, 825, 1432
BmrFI CCNGG 2 cut(s) 615, 801
BmrI ACTGGG 1 cut(s) 1095
BmsI GCATC 7 cut(s) 383, 662, 759, 820, 901, 959, 1317
BmtI GCTAGC 1 cut(s) 1137
BmuI ACTGGG 1 cut(s) 1095
BpmI CTGGAG 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 556
BsaJI CCNNGG 2 cut(s) 67, 746
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 1195, 1225
Bsc4I CCNNNNNNNGG 5 cut(s) 725, 747, 772, 1511, 1512
Bse1I ACTGG 4 cut(s) 825, 875, 1090, 1539
Bse21I CCTNAGG 1 cut(s) 1438
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 2 cut(s) 615, 801
BseDI CCNNGG 2 cut(s) 67, 746
BseGI GGATG 3 cut(s) 634, 781, 988
BseLI CCNNNNNNNGG 5 cut(s) 725, 747, 772, 1511, 1512
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 4 cut(s) 198, 470, 1452, 1614
BseNI ACTGG 4 cut(s) 825, 875, 1090, 1539
BseRI GAGGAG 2 cut(s) 1203, 1426
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 5 cut(s) 175, 322, 853, 922, 944
BseYI CCCAGC 1 cut(s) 867
BsgI GTGCAG 1 cut(s) 175
BshFI GGCC 2 cut(s) 482, 1593
BsiHKAI GWGCWC 3 cut(s) 86, 740, 1115
BslFI GGGAC 4 cut(s) 1102, 1413, 1476, 1528
BslI CCNNNNNNNGG 5 cut(s) 725, 747, 772, 1511, 1512
BsmAI GTCTC 4 cut(s) 330, 1198, 1205, 1414
BsmFI GGGAC 4 cut(s) 1102, 1413, 1476, 1528
BsnI GGCC 2 cut(s) 482, 1593
Bsp119I TTCGAA 1 cut(s) 556
Bsp1286I GDGCHC 3 cut(s) 86, 740, 1115
Bsp1407I TGTACA 2 cut(s) 488, 1455
Bsp19I CCATGG 1 cut(s) 67
BspACI CCGC 3 cut(s) 133, 1397, 1506
BspANI GGCC 2 cut(s) 482, 1593
BspCNI CTCAG 4 cut(s) 199, 469, 1451, 1615
BspLI GGNNCC 4 cut(s) 180, 798, 825, 1432
BspOI GCTAGC 1 cut(s) 1137
BspPI GGATC 8 cut(s) 173, 186, 758, 768, 818, 831, 1248, 1395
BspT104I TTCGAA 1 cut(s) 556
BspTI CTTAAG 1 cut(s) 1177
BsrDI GCAATG 1 cut(s) 208
BsrGI TGTACA 2 cut(s) 488, 1455
BsrI ACTGG 4 cut(s) 825, 875, 1090, 1539
BssECI CCNNGG 2 cut(s) 67, 746
BssT1I CCWWGG 2 cut(s) 67, 746
Bst2UI CCWGG 2 cut(s) 615, 801
Bst4CI ACNGT 2 cut(s) 475, 1166
Bst6I CTCTTC 2 cut(s) 191, 1645
BstAFI CTTAAG 1 cut(s) 1177
BstAPI GCANNNNNTGC 1 cut(s) 198
BstAUI TGTACA 2 cut(s) 488, 1455
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 4 cut(s) 340, 900, 1135, 1595
BstDEI CTNAG 4 cut(s) 207, 456, 1438, 1623
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 3 cut(s) 634, 781, 988
BstMAI GTCTC 4 cut(s) 330, 1198, 1205, 1414
BstMWI GCNNNNNNNGC 7 cut(s) 160, 198, 222, 680, 920, 929, 941
BstNI CCWGG 2 cut(s) 615, 801
BstSCI CCNGG 2 cut(s) 613, 799
BstSFI CTRYAG 1 cut(s) 1332
BstSLI GKGCMC 1 cut(s) 740
BstV1I GCAGC 5 cut(s) 175, 322, 853, 922, 944
BstX2I RGATCY 5 cut(s) 145, 178, 750, 823, 1421
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 5 cut(s) 145, 178, 750, 823, 1421
Bsu36I CCTNAGG 1 cut(s) 1438
BsuRI GGCC 2 cut(s) 482, 1593
BtgI CCRYGG 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 605
BtsCI GGATG 3 cut(s) 634, 781, 988
BtsIMutI CAGTG 4 cut(s) 471, 630, 818, 1532
Cac8I GCNNGC 4 cut(s) 340, 900, 1135, 1595
Cfr13I GGNCC 3 cut(s) 481, 617, 1484
CseI GACGC 2 cut(s) 813, 860
Csp6I GTAC 3 cut(s) 489, 1050, 1456
CviAII CATG 5 cut(s) 68, 685, 891, 1190, 1547
CviQI GTAC 3 cut(s) 489, 1050, 1456
DdeI CTNAG 4 cut(s) 207, 456, 1438, 1623
DraIII CACNNNGTG 2 cut(s) 198, 605
DriI GACNNNNNGTC 1 cut(s) 1406
EaeI YGGCCR 1 cut(s) 1591
Eam1104I CTCTTC 2 cut(s) 191, 1645
Eam1105I GACNNNNNGTC 1 cut(s) 1406
EarI CTCTTC 2 cut(s) 191, 1645
Ecl136II GAGCTC 1 cut(s) 1113
Eco130I CCWWGG 2 cut(s) 67, 746
Eco24I GRGCYC 1 cut(s) 1115
Eco47I GGWCC 2 cut(s) 617, 1484
Eco53kI GAGCTC 1 cut(s) 1113
Eco81I CCTNAGG 1 cut(s) 1438
EcoICRI GAGCTC 1 cut(s) 1113
EcoRII CCWGG 2 cut(s) 613, 799
EcoT14I CCWWGG 2 cut(s) 67, 746
EcoT38I GRGCYC 1 cut(s) 1115
ErhI CCWWGG 2 cut(s) 67, 746
FaeI CATG 5 cut(s) 71, 688, 894, 1193, 1550
FaqI GGGAC 4 cut(s) 1102, 1413, 1476, 1528
FatI CATG 5 cut(s) 67, 684, 890, 1189, 1546
FauI CCCGC 2 cut(s) 1390, 1513
FbaI TGATCA 3 cut(s) 265, 1054, 1273
Fnu4HI GCNGC 6 cut(s) 133, 164, 336, 842, 933, 936
FokI GGATG 3 cut(s) 641, 788, 975
FriOI GRGCYC 1 cut(s) 1115
Fsp4HI GCNGC 6 cut(s) 133, 164, 336, 842, 933, 936
GluI GCNGC 6 cut(s) 133, 164, 336, 842, 933, 936
GsaI CCCAGC 1 cut(s) 871
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 2 cut(s) 482, 1593
HgaI GACGC 2 cut(s) 813, 860
Hin1II CATG 5 cut(s) 71, 688, 894, 1193, 1550
HindIII AAGCTT 1 cut(s) 896
HinfI GANTC 2 cut(s) 553, 1619
HphI GGTGA 2 cut(s) 755, 1195
Hpy166II GTNNAC 6 cut(s) 61, 608, 738, 1458, 1484, 1532
Hpy188I TCNGA 4 cut(s) 881, 1291, 1543, 1624
Hpy188III TCNNGA 7 cut(s) 171, 827, 1217, 1391, 1419, 1440, 1644
Hpy8I GTNNAC 6 cut(s) 61, 608, 738, 1458, 1484, 1532
HpyAV CCTTC 2 cut(s) 511, 1218
HpyCH4III ACNGT 2 cut(s) 475, 1166
HpyCH4IV ACGT 3 cut(s) 139, 1159, 1402
HpyF10VI GCNNNNNNNGC 7 cut(s) 160, 198, 222, 680, 920, 929, 941
HpyF3I CTNAG 4 cut(s) 207, 456, 1438, 1623
HpySE526I ACGT 3 cut(s) 139, 1159, 1402
Hsp92II CATG 5 cut(s) 71, 688, 894, 1193, 1550
Ksp22I TGATCA 3 cut(s) 265, 1054, 1273
LmnI GCTCC 2 cut(s) 796, 1442
Lsp1109I GCAGC 5 cut(s) 175, 322, 853, 922, 944
LweI GCATC 7 cut(s) 383, 662, 759, 820, 901, 959, 1317
MaeII ACGT 3 cut(s) 139, 1159, 1402
MaeIII GTNAC 4 cut(s) 676, 1160, 1172, 1343
MflI RGATCY 5 cut(s) 145, 178, 750, 823, 1421
MhlI GDGCHC 3 cut(s) 86, 740, 1115
MlsI TGGCCA 1 cut(s) 1593
MluNI TGGCCA 1 cut(s) 1593
MlyI GAGTC 1 cut(s) 1628
MmeI TCCRAC 3 cut(s) 73, 686, 1067
Mox20I TGGCCA 1 cut(s) 1593
MroXI GAANNNNTTC 1 cut(s) 783
MscI TGGCCA 1 cut(s) 1593
MseI TTAA 2 cut(s) 1065, 1178
MslI CAYNNNNRTG 3 cut(s) 320, 476, 993
Msp20I TGGCCA 1 cut(s) 1593
MspA1I CMGCKG 2 cut(s) 674, 935
MspCI CTTAAG 1 cut(s) 1177
MspR9I CCNGG 2 cut(s) 615, 801
MvaI CCWGG 2 cut(s) 615, 801
MwoI GCNNNNNNNGC 7 cut(s) 160, 198, 222, 680, 920, 929, 941
NcoI CCATGG 1 cut(s) 67
NheI GCTAGC 1 cut(s) 1133
NlaIII CATG 5 cut(s) 71, 688, 894, 1193, 1550
NlaIV GGNNCC 4 cut(s) 180, 798, 825, 1432
NmuCI GTSAC 1 cut(s) 676
NspV TTCGAA 1 cut(s) 556
OliI CACNNNNGTG 2 cut(s) 320, 476
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 613
PkrI GCNGC 6 cut(s) 134, 165, 337, 843, 934, 937
PleI GAGTC 1 cut(s) 1627
PpsI GAGTC 1 cut(s) 1627
Psp124BI GAGCTC 1 cut(s) 1115
Psp6I CCWGG 2 cut(s) 613, 799
PspFI CCCAGC 1 cut(s) 867
PspGI CCWGG 2 cut(s) 613, 799
PspN4I GGNNCC 4 cut(s) 180, 798, 825, 1432
PspPI GGNCC 3 cut(s) 481, 617, 1484
PsuI RGATCY 5 cut(s) 145, 178, 750, 823, 1421
PvuII CAGCTG 2 cut(s) 674, 935
RsaI GTAC 3 cut(s) 490, 1051, 1457
RsaNI GTAC 3 cut(s) 489, 1050, 1456
RseI CAYNNNNRTG 3 cut(s) 320, 476, 993
SacI GAGCTC 1 cut(s) 1115
SaqAI TTAA 2 cut(s) 1065, 1178
SatI GCNGC 6 cut(s) 133, 164, 336, 842, 933, 936
Sau96I GGNCC 3 cut(s) 481, 617, 1484
ScaI AGTACT 1 cut(s) 1051
SchI GAGTC 1 cut(s) 1628
ScrFI CCNGG 2 cut(s) 615, 801
SduI GDGCHC 3 cut(s) 86, 740, 1115
SfaNI GCATC 7 cut(s) 383, 662, 759, 820, 901, 959, 1317
SfcI CTRYAG 1 cut(s) 1332
SfuI TTCGAA 1 cut(s) 556
SinI GGWCC 2 cut(s) 617, 1484
SmiMI CAYNNNNRTG 3 cut(s) 320, 476, 993
SmlI CTYRAG 1 cut(s) 1177
SmoI CTYRAG 1 cut(s) 1177
SpeI ACTAGT 1 cut(s) 1046
SsiI CCGC 3 cut(s) 133, 1397, 1506
SspI AATATT 1 cut(s) 1525
SstI GAGCTC 1 cut(s) 1115
StyD4I CCNGG 2 cut(s) 613, 799
StyI CCWWGG 2 cut(s) 67, 746
TaaI ACNGT 2 cut(s) 475, 1166
TaiI ACGT 3 cut(s) 142, 1162, 1405
TaqI TCGA 5 cut(s) 6, 391, 556, 815, 1013
TatI WGTACW 3 cut(s) 488, 1049, 1455
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 553
Tru1I TTAA 2 cut(s) 1065, 1178
Tru9I TTAA 2 cut(s) 1065, 1178
TscAI CASTG 4 cut(s) 478, 630, 825, 1539
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 5 cut(s) 163, 335, 841, 932, 935
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 6 cut(s) 27, 431, 725, 792, 1011, 1512
TspGWI ACGGA 1 cut(s) 981
TspRI CASTG 4 cut(s) 478, 630, 825, 1539
Vha464I CTTAAG 1 cut(s) 1177
VneI GTGCAC 1 cut(s) 736
VpaK11BI GGWCC 2 cut(s) 617, 1484
XapI RAATTY 1 cut(s) 712
XbaI TCTAGA 2 cut(s) 1216, 1643
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XmnI GAANNNNTTC 1 cut(s) 783
ZrmI AGTACT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.