Rmu_sc0000003.1_g000012

Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000003.1
OG0015628
Physical Location & Seq
Reverse (-)
68318 .. 69931
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1614 bp
atgcaagctctccttaagctgcaacacaatcagtacacagcagatgagctttccactctggttcaaagcattgagattgagagagatgagtacatacgagactgtaaagaggctaggactcgcgtggatgaactcgagtccaaggtgaaggagatggctgatcagctttcggaaactgccgagctacgcgagcagcttatgcacgtttttagcgagttgaaggccacacaagccgagctgtttagcatggaaactgacctcgcgcgtgccagagattcagagctcaaggccctaacacaagcggaactgatggagagtgctttcgtcatggagcaagaaaggacagaagagcttgtgagacaggttgcagatctcaatgaggcgatattcatgtcaaaagatgctgccattgaggccgagaatgacaagttagcaatgttatctgagaaagatgccgagattgagctagctacacaagctgctcttaaagcacaggagcagctagaagacgcaagaatacaaacactagcagttcaggagttggagaatcagctcctttccaagtctgagtacattgaaatgcttaaatatgagatcaaagatgtaaatgaacaacttgttttgtccaagaaggctgcttctgatgctattgataatctgaagctggtacaagaagagttggaagggatggaaagaaagaacttcgatcaggaaggtttgattgagtcacttgaaatggaattgaatcagttaaaacaagagataataaatgctaatgaagtggctaatcgcttgaaggttgatgttgaaattctaaccagcaagttacaggaggcaagaagtgagattgatgaaatcaagcagagggaaaacaatgcactagttgagatagcaatgctggaatctgagctgcatagaggaaggtcaaaaattgcagcagctgaggcagctgaagcaagaaaggagaacatgaaatctgggatgtatcttgcaattcagcaactagcaatagaagccgaaactgccaagatggaaaacagaatgttaaaacaaggagcagatggggtagaggaagaagctgatgaacaatatcaggatgctgaagcttccgaaattgaagaactcaatgttgaagaagatcatgaagagagaaaagaacaggataatggacaacttataacaatttcgttgaaggaatatgagtgcttgattgagaaggcagagaaggctgatcaaattcctgtgtcattggagaaggaacttagttttggtcgacagtcaagcttaagcgccacagaagataagtctgagttggaaaggttagggaaggagctagaggctgctttggaaaaagtagtgcaattcaggaaccgagcagaacaggcagttacgagggctgatcttgctgagacagctaaagcaggactcgaggatcagataaggcgatggagagagcacaggcaaaagagaagggctgctcttattgcacttagggaggtagctgctccaaaagaatatggatatcatgctcctcaagaatttagccttcctgaatacaatgaaatacaaaaggaaaatcccccactaggtcaggtacttaacttgaaattctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WEMBL

Protein Analysis

537

Amino Acids

61.42

Weight (kDa)

4.6

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 2 - 371 1.6e-12 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015628)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14430
malus_domestica MD06G1198500.v1.1 MD14G1206000.v1.1
prunus_persica Prupe.5G199300_v2.0.a1 Prupe.5G199300_v2.0.a1
pyrus_communis pycom14g17040
rosa_chinensis RchiOBHm_Chr7g0182231
rosa_laevigata RLG00000005138
rosa_multiflora Rmu_sc0000003.1_g000012
rosa_roxburghii Rroxscaffold_3G00271400
rosa_rugosa Rorug06G0446300
rosa_samantha Rh7AG049300 Rh7BG049400 Rh7CG050700 Rh7DG048600
rosa_wichuraiana Rw7G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1178
AccI GTMKAC 1 cut(s) 1273
AccII CGCG 4 cut(s) 123, 189, 263, 265
AciI CCGC 1 cut(s) 302
AclWI GGATC 1 cut(s) 1440
AcsI RAATTY 4 cut(s) 810, 1236, 1538, 1607
AcuI CTGAAG 3 cut(s) 680, 972, 1122
AfaI GTAC 5 cut(s) 35, 92, 572, 669, 1596
AfiI CCNNNNNNNGG 1 cut(s) 1586
AflII CTTAAG 2 cut(s) 14, 1285
AhlI ACTAGT 1 cut(s) 880
AjuI GAANNNNNNNTTGG 2 cut(s) 1251, 1283
Alw21I GWGCWC 2 cut(s) 285, 1458
Alw26I GTCTC 3 cut(s) 93, 352, 1403
AlwI GGATC 1 cut(s) 1440
AlwNI CAGNNNCTG 1 cut(s) 941
Ama87I CYCGRG 2 cut(s) 134, 1427
AoxI GGCC 3 cut(s) 222, 288, 414
ApoI RAATTY 4 cut(s) 810, 1236, 1538, 1607
AspLEI GCGC 2 cut(s) 265, 1292
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 157
AsuNHI GCTAGC 1 cut(s) 466
AvaI CYCGRG 2 cut(s) 134, 1427
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 2 cut(s) 285, 1458
BbvCI CCTCAGC 1 cut(s) 942
BccI CCATC 6 cut(s) 148, 304, 682, 1024, 1055, 1440
BclI TGATCA 2 cut(s) 160, 1231
BcoDI GTCTC 3 cut(s) 93, 352, 1403
BcuI ACTAGT 1 cut(s) 880
BfaI CTAG 9 cut(s) 114, 467, 503, 527, 881, 1004, 1334, 1586, 1612
BfoI RGCGCY 1 cut(s) 1293
BfrI CTTAAG 2 cut(s) 14, 1285
BglI GCCNNNNNGGC 1 cut(s) 413
BglII AGATCT 1 cut(s) 370
BmeT110I CYCGRG 2 cut(s) 134, 1427
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 1370
BmsI GCATC 4 cut(s) 391, 442, 634, 1087
BmtI GCTAGC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 942
BpuEI CTTGAG 2 cut(s) 269, 1518
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 1586
Bse3DI GCAATG 2 cut(s) 441, 900
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 4 cut(s) 133, 693, 987, 1102
BseLI CCNNNNNNNGG 1 cut(s) 1586
BseMI GCAATG 2 cut(s) 441, 900
BseMII CTCAG 6 cut(s) 435, 558, 897, 933, 1299, 1398
BseRI GAGGAG 1 cut(s) 1521
Bsh1236I CGCG 4 cut(s) 123, 189, 263, 265
BshFI GGCC 3 cut(s) 224, 290, 416
BsiHKAI GWGCWC 2 cut(s) 285, 1458
BsiHKCI CYCGRG 2 cut(s) 134, 1427
BslI CCNNNNNNNGG 1 cut(s) 1586
BsmAI GTCTC 3 cut(s) 93, 352, 1403
BsnI GGCC 3 cut(s) 224, 290, 416
BsoBI CYCGRG 2 cut(s) 134, 1427
Bsp1286I GDGCHC 2 cut(s) 285, 1458
Bsp143I GATC 8 cut(s) 160, 370, 594, 706, 1138, 1231, 1399, 1432
BspACI CCGC 1 cut(s) 302
BspANI GGCC 3 cut(s) 224, 290, 416
BspCNI CTCAG 6 cut(s) 436, 559, 898, 934, 1300, 1399
BspFNI CGCG 4 cut(s) 123, 189, 263, 265
BspHI TCATGA 1 cut(s) 1141
BspLI GGNNCC 1 cut(s) 1370
BspOI GCTAGC 1 cut(s) 470
BspPI GGATC 1 cut(s) 1440
BspQI GCTCTTC 1 cut(s) 342
BspTI CTTAAG 2 cut(s) 14, 1285
BsrDI GCAATG 2 cut(s) 441, 900
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 8 cut(s) 160, 370, 594, 706, 1138, 1231, 1399, 1432
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 2 cut(s) 104, 1278
Bst6I CTCTTC 3 cut(s) 342, 669, 1140
BstAFI CTTAAG 2 cut(s) 14, 1285
BstAPI GCANNNNNTGC 1 cut(s) 199
BstC8I GCNNGC 4 cut(s) 6, 191, 267, 468
BstDEI CTNAG 8 cut(s) 444, 567, 906, 942, 1262, 1308, 1407, 1490
BstF5I GGATG 4 cut(s) 133, 693, 987, 1102
BstFNI CGCG 4 cut(s) 123, 189, 263, 265
BstH2I RGCGCY 1 cut(s) 1293
BstHHI GCGC 2 cut(s) 265, 1292
BstKTI GATC 8 cut(s) 163, 373, 597, 709, 1141, 1234, 1402, 1435
BstMAI GTCTC 3 cut(s) 93, 352, 1403
BstMBI GATC 8 cut(s) 160, 370, 594, 706, 1138, 1231, 1399, 1432
BstUI CGCG 4 cut(s) 123, 189, 263, 265
BstV2I GAAGAC 1 cut(s) 513
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 3 cut(s) 224, 290, 416
BtgZI GCGATG 1 cut(s) 1459
BtsCI GGATG 4 cut(s) 133, 693, 987, 1102
Cac8I GCNNGC 4 cut(s) 6, 191, 267, 468
CaiI CAGNNNCTG 1 cut(s) 941
CciI TCATGA 1 cut(s) 1141
CfoI GCGC 2 cut(s) 265, 1292
Cfr13I GGNCC 1 cut(s) 289
CseI GACGC 1 cut(s) 518
Csp6I GTAC 5 cut(s) 34, 91, 571, 668, 1595
CviAII CATG 6 cut(s) 247, 328, 391, 970, 1142, 1526
CviQI GTAC 5 cut(s) 34, 91, 571, 668, 1595
DdeI CTNAG 8 cut(s) 444, 567, 906, 942, 1262, 1308, 1407, 1490
DpnI GATC 8 cut(s) 162, 372, 596, 708, 1140, 1233, 1401, 1434
DpnII GATC 8 cut(s) 160, 370, 594, 706, 1138, 1231, 1399, 1432
Eam1104I CTCTTC 3 cut(s) 342, 669, 1140
EarI CTCTTC 3 cut(s) 342, 669, 1140
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 285
Eco32I GATATC 1 cut(s) 1523
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 3 cut(s) 680, 972, 1122
Eco88I CYCGRG 2 cut(s) 134, 1427
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 289
EcoRV GATATC 1 cut(s) 1523
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 6 cut(s) 250, 331, 394, 973, 1145, 1529
FalI AAGNNNNNCTT 3 cut(s) 29, 468, 500
FatI CATG 6 cut(s) 246, 327, 390, 969, 1141, 1525
FbaI TGATCA 2 cut(s) 160, 1231
FblI GTMKAC 1 cut(s) 1273
FokI GGATG 4 cut(s) 140, 700, 994, 1109
FriOI GRGCYC 1 cut(s) 285
FspBI CTAG 9 cut(s) 114, 467, 503, 527, 881, 1004, 1334, 1586, 1612
GlaI GCGC 2 cut(s) 264, 1291
HaeII RGCGCY 1 cut(s) 1293
HaeIII GGCC 3 cut(s) 224, 290, 416
HgaI GACGC 1 cut(s) 518
HhaI GCGC 2 cut(s) 265, 1292
Hin1II CATG 6 cut(s) 250, 331, 394, 973, 1145, 1529
Hin6I GCGC 2 cut(s) 263, 1290
HinP1I GCGC 2 cut(s) 263, 1290
HincII GTYRAC 1 cut(s) 1274
HindII GTYRAC 1 cut(s) 1274
HindIII AAGCTT 2 cut(s) 1104, 1282
HinfI GANTC 8 cut(s) 118, 137, 275, 547, 725, 745, 902, 1425
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 36, 1274
Hpy188III TCNNGA 7 cut(s) 536, 710, 1094, 1142, 1366, 1535, 1550
Hpy8I GTNNAC 2 cut(s) 36, 1274
HpyCH4III ACNGT 2 cut(s) 104, 1278
HpyCH4IV ACGT 1 cut(s) 204
HpyF3I CTNAG 8 cut(s) 444, 567, 906, 942, 1262, 1308, 1407, 1490
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 6 cut(s) 250, 331, 394, 973, 1145, 1529
HspAI GCGC 2 cut(s) 263, 1290
Ksp22I TGATCA 2 cut(s) 160, 1231
Kzo9I GATC 8 cut(s) 160, 370, 594, 706, 1138, 1231, 1399, 1432
LguI GCTCTTC 1 cut(s) 342
LmnI GCTCC 7 cut(s) 331, 496, 558, 1055, 1330, 1510, 1534
LweI GCATC 4 cut(s) 391, 442, 634, 1087
MaeI CTAG 9 cut(s) 114, 467, 503, 527, 881, 1004, 1334, 1586, 1612
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 3 cut(s) 726, 825, 1387
MalI GATC 8 cut(s) 162, 372, 596, 708, 1140, 1233, 1401, 1434
MboI GATC 8 cut(s) 160, 370, 594, 706, 1138, 1231, 1399, 1432
MboII GAAGA 9 cut(s) 359, 518, 686, 1085, 1130, 1145, 1148, 1157, 1310
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 2 cut(s) 285, 1458
MlyI GAGTC 4 cut(s) 112, 146, 734, 1419
MmeI TCCRAC 3 cut(s) 522, 660, 1293
MseI TTAA 7 cut(s) 15, 486, 585, 752, 1046, 1286, 1599
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 2 cut(s) 941, 950
MspCI CTTAAG 2 cut(s) 14, 1285
MvnI CGCG 4 cut(s) 123, 189, 263, 265
NdeII GATC 8 cut(s) 160, 370, 594, 706, 1138, 1231, 1399, 1432
NheI GCTAGC 1 cut(s) 466
NlaIII CATG 6 cut(s) 250, 331, 394, 973, 1145, 1529
NlaIV GGNNCC 1 cut(s) 1370
NmeAIII GCCGAG 4 cut(s) 205, 259, 442, 481
NmuCI GTSAC 1 cut(s) 726
PaeR7I CTCGAG 2 cut(s) 134, 1427
PagI TCATGA 1 cut(s) 1141
PciSI GCTCTTC 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 4 cut(s) 275, 547, 745, 902
PleI GAGTC 4 cut(s) 112, 145, 733, 1419
PpsI GAGTC 4 cut(s) 112, 145, 733, 1419
PsiI TTATAA 1 cut(s) 1178
Psp124BI GAGCTC 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 1370
PspPI GGNCC 1 cut(s) 289
PspXI VCTCGAGB 2 cut(s) 134, 1427
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 1 cut(s) 370
PvuII CAGCTG 2 cut(s) 941, 950
RsaI GTAC 5 cut(s) 35, 92, 572, 669, 1596
RsaNI GTAC 5 cut(s) 34, 91, 571, 668, 1595
RseI CAYNNNNRTG 1 cut(s) 578
SacI GAGCTC 1 cut(s) 285
SalI GTCGAC 1 cut(s) 1272
SapI GCTCTTC 1 cut(s) 342
SaqAI TTAA 7 cut(s) 15, 486, 585, 752, 1046, 1286, 1599
Sau3AI GATC 8 cut(s) 160, 370, 594, 706, 1138, 1231, 1399, 1432
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 4 cut(s) 112, 146, 734, 1419
SduI GDGCHC 2 cut(s) 285, 1458
SfaNI GCATC 4 cut(s) 391, 442, 634, 1087
Sfr274I CTCGAG 2 cut(s) 134, 1427
SlaI CTCGAG 2 cut(s) 134, 1427
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 6 cut(s) 14, 134, 284, 1285, 1427, 1533
SmoI CTYRAG 6 cut(s) 14, 134, 284, 1285, 1427, 1533
SpeI ACTAGT 1 cut(s) 880
SsiI CCGC 1 cut(s) 302
SspMI CTAG 9 cut(s) 114, 467, 503, 527, 881, 1004, 1334, 1586, 1612
SstI GAGCTC 1 cut(s) 285
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 104, 1278
TaiI ACGT 1 cut(s) 207
TaqI TCGA 4 cut(s) 135, 705, 1273, 1428
TatI WGTACW 3 cut(s) 33, 90, 570
TfiI GAWTC 4 cut(s) 275, 547, 745, 902
Tru1I TTAA 7 cut(s) 15, 486, 585, 752, 1046, 1286, 1599
Tru9I TTAA 7 cut(s) 15, 486, 585, 752, 1046, 1286, 1599
TseFI GTSAC 1 cut(s) 726
Tsp45I GTSAC 1 cut(s) 726
TspDTI ATGAA 9 cut(s) 144, 379, 624, 792, 867, 986, 1098, 1158, 1575
Vha464I CTTAAG 2 cut(s) 14, 1285
XapI RAATTY 4 cut(s) 810, 1236, 1538, 1607
XhoI CTCGAG 2 cut(s) 134, 1427
XmiI GTMKAC 1 cut(s) 1273
XspI CTAG 9 cut(s) 114, 467, 503, 527, 881, 1004, 1334, 1586, 1612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.