Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000050.1

Orthogroup ID

OG0012229

Physical Location & Seq

Genomic Coordinates Forward (+)

116567 .. 117223

Gene Structure 657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgcctccgtcgcttgctgcctctgtcttcttcttcttcttctcagttcttggcctcatttcctcagtccactcgcacttatgctcaccgcaccatcaatctctctgcccaccctttacttcaactcctccttttcccttctctttctcacctggctgtggccacccctctttccaaatcaaatgctacgcaaatcactccataatcaccattaacaacctcgctttctccctcctccactacgatcccaactccacatctctccttctctccccctacatctccaactcgacaattaaagctaaatcccttagcactagcactagcactagcaactgctcatcccctcactttctttcaatccccagccgctccatcaacctctcctcttcccccttccgcttctccgacggttcctgcaaccgcctctctgttctcaaaccttgctccccgccaaatctccctaattgcagccattgtccctgggaatgcaagctcataaagagcccggtcaagctactccctgactgtggatctagtcgtagcgctgttcccaaccagggctgccaagccgatgtcttgggatatcttgacaacttcctccaactcgggatcgagctcgagtgggacgaagctcaagattcctacttgtcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

218

Amino Acids

23.69

Weight (kDa)

7.07

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	36 - 88	5.5e-06	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69910
fragaria_vesca	FvH4_4g35620
malus_domestica	MD13G1081800.v1.1 MD16G1080900.v1.1
prunus_persica	Prupe.1G265100_v2.0.a1
pyrus_communis	pycom13g07060 pycom16g06990
rosa_chinensis	RchiOBHm_Chr4g0445241
rosa_laevigata	RLG00000005756
rosa_multiflora	Rmu_co8464497.1_g000001 Rmu_sc0000050.1_g000028 Rmu_sc0000050.1_g000029
rosa_roxburghii	Rroxscaffold_5G00385740
rosa_rugosa	Rorug04G0360000
rosa_samantha	Rh4AG421100 Rh4BG433000 Rh4CG447600 Rh4DG429000
rosa_wichuraiana	Rw4G036110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	372
AciI	CCGC	5 cut(s)	89, 370, 400, 424, 452
AclWI	GGATC	3 cut(s)	239, 541, 620
AcoI	YGGCCR	1 cut(s)	160
AfeI	AGCGCT	1 cut(s)	547
AfiI	CCNNNNNNNGG	3 cut(s)	158, 530, 560
AgsI	TTSAA	2 cut(s)	123, 360
AjnI	CCWGG	3 cut(s)	151, 482, 558
AluBI	AGCT	5 cut(s)	302, 496, 517, 619, 635
AluI	AGCT	5 cut(s)	302, 496, 517, 619, 635
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	3 cut(s)	239, 541, 620
Ama87I	CYCGRG	2 cut(s)	608, 620
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	2 cut(s)	52, 160
ApeKI	GCWGC	3 cut(s)	17, 471, 564
AspLEI	GCGC	1 cut(s)	548
AsuC2I	CCSGG	1 cut(s)	509
AsuHPI	GGTGA	3 cut(s)	78, 141, 199
AvaI	CYCGRG	2 cut(s)	608, 620
BalI	TGGCCA	1 cut(s)	162
BanII	GRGCYC	2 cut(s)	509, 621
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	3 cut(s)	4, 483, 551
BccI	CCATC	2 cut(s)	102, 383
BciT130I	CCWGG	3 cut(s)	153, 484, 560
BcnI	CCSGG	1 cut(s)	509
BfaI	CTAG	4 cut(s)	318, 324, 330, 537
BfoI	RGCGCY	1 cut(s)	549
BisI	GCNGC	4 cut(s)	18, 370, 472, 565
BlsI	GCNGC	4 cut(s)	19, 371, 473, 566
Bme1390I	CCNGG	4 cut(s)	153, 484, 509, 560
BmeT110I	CYCGRG	2 cut(s)	608, 620
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	4 cut(s)	153, 484, 509, 560
BpiI	GAAGAC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	482, 483, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 530, 560
BseBI	CCWGG	3 cut(s)	153, 484, 560
BseDI	CCNNGG	3 cut(s)	482, 483, 559
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	158, 530, 560
BseMII	CTCAG	2 cut(s)	57, 78
BseRI	GAGGAG	3 cut(s)	117, 224, 376
BseXI	GCAGC	3 cut(s)	4, 483, 551
BseYI	CCCAGC	1 cut(s)	365
BshFI	GGCC	2 cut(s)	54, 162
BsiHKAI	GWGCWC	1 cut(s)	621
BsiHKCI	CYCGRG	2 cut(s)	608, 620
BsiSI	CCGG	1 cut(s)	509
BslFI	GGGAC	2 cut(s)	465, 641
BslI	CCNNNNNNNGG	3 cut(s)	158, 530, 560
BsmFI	GGGAC	2 cut(s)	465, 641
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	2 cut(s)	54, 162
BsoBI	CYCGRG	2 cut(s)	608, 620
Bsp1286I	GDGCHC	2 cut(s)	509, 621
Bsp143I	GATC	3 cut(s)	244, 533, 612
BspACI	CCGC	5 cut(s)	89, 370, 400, 424, 452
BspANI	GGCC	2 cut(s)	54, 162
BspCNI	CTCAG	2 cut(s)	56, 77
BspLI	GGNNCC	1 cut(s)	415
BspPI	GGATC	3 cut(s)	239, 541, 620
BsrBI	CCGCTC	1 cut(s)	372
BssECI	CCNNGG	3 cut(s)	482, 483, 559
BssMI	GATC	3 cut(s)	244, 533, 612
Bst2UI	CCWGG	3 cut(s)	153, 484, 560
Bst4CI	ACNGT	2 cut(s)	413, 530
Bst6I	CTCTTC	1 cut(s)	394
BstC8I	GCNNGC	2 cut(s)	15, 494
BstDEI	CTNAG	3 cut(s)	43, 64, 311
BstF5I	GGATG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	3 cut(s)	247, 536, 615
BstMBI	GATC	3 cut(s)	244, 533, 612
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	3 cut(s)	153, 484, 560
BstSCI	CCNGG	4 cut(s)	151, 482, 507, 558
BstV1I	GCAGC	3 cut(s)	4, 483, 551
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	533
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	54, 162
BtsCI	GGATG	1 cut(s)	341
Cac8I	GCNNGC	2 cut(s)	15, 494
CfoI	GCGC	1 cut(s)	548
DdeI	CTNAG	3 cut(s)	43, 64, 311
DpnI	GATC	3 cut(s)	246, 535, 614
DpnII	GATC	3 cut(s)	244, 533, 612
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
Ecl136II	GAGCTC	1 cut(s)	619
Eco24I	GRGCYC	2 cut(s)	509, 621
Eco32I	GATATC	1 cut(s)	587
Eco47III	AGCGCT	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	619
Eco88I	CYCGRG	2 cut(s)	608, 620
EcoICRI	GAGCTC	1 cut(s)	619
EcoRII	CCWGG	3 cut(s)	151, 482, 558
EcoRV	GATATC	1 cut(s)	587
EcoT38I	GRGCYC	2 cut(s)	509, 621
FaiI	YATR	3 cut(s)	82, 203, 500
FaqI	GGGAC	2 cut(s)	465, 641
FauI	CCCGC	1 cut(s)	459
Fnu4HI	GCNGC	4 cut(s)	18, 370, 472, 565
FokI	GGATG	1 cut(s)	328
FriOI	GRGCYC	2 cut(s)	509, 621
Fsp4HI	GCNGC	4 cut(s)	18, 370, 472, 565
FspBI	CTAG	4 cut(s)	318, 324, 330, 537
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	4 cut(s)	18, 370, 472, 565
GsaI	CCCAGC	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	2 cut(s)	54, 162
HapII	CCGG	1 cut(s)	509
HhaI	GCGC	1 cut(s)	548
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HinfI	GANTC	1 cut(s)	641
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	3 cut(s)	78, 141, 199
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	409
Hpy188III	TCNNGA	3 cut(s)	590, 610, 638
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	2 cut(s)	13, 413
HpyAV	CCTTC	3 cut(s)	148, 275, 406
HpyCH4III	ACNGT	2 cut(s)	413, 530
HpyCH4V	TGCA	3 cut(s)	420, 471, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	43, 64, 311
HspAI	GCGC	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	244, 533, 612
LmnI	GCTCC	2 cut(s)	377, 452
Lsp1109I	GCAGC	3 cut(s)	4, 483, 551
MaeI	CTAG	4 cut(s)	318, 324, 330, 537
MalI	GATC	3 cut(s)	246, 535, 614
MbiI	CCGCTC	1 cut(s)	372
MboI	GATC	3 cut(s)	244, 533, 612
MboII	GAAGA	6 cut(s)	19, 22, 25, 28, 31, 381
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	2 cut(s)	509, 621
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	2 cut(s)	294, 466
MluNI	TGGCCA	1 cut(s)	162
MmeI	TCCRAC	3 cut(s)	309, 432, 628
Mox20I	TGGCCA	1 cut(s)	162
MscI	TGGCCA	1 cut(s)	162
MseI	TTAA	2 cut(s)	213, 297
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	4 cut(s)	153, 484, 509, 560
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	3 cut(s)	153, 484, 560
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	509
NdeII	GATC	3 cut(s)	244, 533, 612
NlaIV	GGNNCC	1 cut(s)	415
PaeR7I	CTCGAG	1 cut(s)	620
PasI	CCCWGGG	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	641
PkrI	GCNGC	4 cut(s)	19, 371, 473, 566
Psp124BI	GAGCTC	1 cut(s)	621
Psp6I	CCWGG	3 cut(s)	151, 482, 558
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	3 cut(s)	151, 482, 558
PspN4I	GGNNCC	1 cut(s)	415
PspXI	VCTCGAGB	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	533
SacI	GAGCTC	1 cut(s)	621
SaqAI	TTAA	2 cut(s)	213, 297
SatI	GCNGC	4 cut(s)	18, 370, 472, 565
Sau3AI	GATC	3 cut(s)	244, 533, 612
ScrFI	CCNGG	4 cut(s)	153, 484, 509, 560
SduI	GDGCHC	2 cut(s)	509, 621
SetI	ASST	9 cut(s)	154, 222, 304, 384, 445, 498, 519, 621, 637
Sfr274I	CTCGAG	1 cut(s)	620
SlaI	CTCGAG	1 cut(s)	620
SmlI	CTYRAG	2 cut(s)	620, 636
SmoI	CTYRAG	2 cut(s)	620, 636
Sse9I	AATT	2 cut(s)	294, 466
SsiI	CCGC	5 cut(s)	89, 370, 400, 424, 452
SspMI	CTAG	4 cut(s)	318, 324, 330, 537
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	4 cut(s)	151, 482, 507, 558
TaaI	ACNGT	2 cut(s)	413, 530
TaqI	TCGA	3 cut(s)	290, 615, 621
TasI	AATT	2 cut(s)	294, 466
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	2 cut(s)	213, 297
Tru9I	TTAA	2 cut(s)	213, 297
TseI	GCWGC	3 cut(s)	17, 471, 564
XhoI	CTCGAG	1 cut(s)	620
XspI	CTAG	4 cut(s)	318, 324, 330, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.