Rmu_sc0000061.1_g000039

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000061.1
Physical Location & Seq
Forward (+)
172821 .. 176397
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000061.1_g000039.1.cds

Sequence Viewer

Length: 1500 bp
atgcaagccttctcgccctccttcgccgtctgttcctattttccgatacgacgccgtcgcatcaccaccgcctctccccgcaaatccaatctcaagcgactcacctcccgcgtcgtccaactcactcgccgacgacagctccaccagataatggaggagatagagatcgctagagaacggtacgggaagctgaacacgatagtgatgaacgcggtggtggaggcgtgtgtccattgcggcgacatcgactctgcacttaaggtgttcgacgaaatgtctaagccggggagctgtggcgttgatactgtcacatatgctacacttttgaagggattgggcggggcgaggagaatcgatgaggcatttgaagtgcttgaatccgtcgaacgcggtgttgctgtgggaagtccaaagttgtcagcacctcttatttttggactgctgaatgctttggtggaagcaggagatttacgccgagctaatggacttcttgcacggtatggttttctgcttcgagaaggtggcagtctttcactcagagtctacaacttattaatgaagggatgtattaattcaggccttcctcagggtgcgatagacatgcacaacgaattaatacgtctagggttgaagcctgataggcttacctataatactctaatatctgcatgtgtaaaagctgggaagttggatgccgcagtgcaatactttgaggaaatgaaggatgaagcgcagaaatttagtgatgctggtctattccctgatgtcatcacctatagtacattgcttaagggttttggggattccaaagatatccttatggttcataagattgtttcagaaatgaaaacatatattggtttgttcattgatcgaacagcatatacggcagcagttgatgctttgctaaattgtgacgcaataaagggtgctttatgtattttcggagaattactaaagcaggctggtggaaatccagagttgcgacccaaacctcacctttatctttccttgatgcgtgcctttgctgttagaggagattatgacacagtaaacagtctgcataagcacatgtggctagatactgctggaactatctacccaatgattcatgaagaagctgatcatcttgtaatggagtcagctttaaatgatgggcaggtagatttggccaaaaattaccttggaaccatcattacaaggtggaagagaatagcatggacaagtcgaggaggcatggttgctctacgcacagaggccttgttgggaaacacaaaatcgatattgactccttatctacttcctcaggtattggctagtgatccgattgagagtgtgatgatgccctttgaagcagctcggccacttcttgggactgtgaagttgagtgaggtggctatgcgtttctttagagattcagcagtgcctatcatagatgactggggtaactgcattggagtattgcaccgtgaagactgtacagagctatacatatcatga

Protein Analysis

499

Amino Acids

55.26

Weight (kDa)

8.22

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014256)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10690 AT5G10690
fragaria_vesca FvH4_2g36670 FvH4_2g36670
malus_domestica MD08G1128000.v1.1
prunus_persica Prupe.1G459800_v2.0.a1
pyrus_communis pycom08g10700
rosa_chinensis RchiOBHm_Chr6g0305021
rosa_laevigata RLG00000010927
rosa_multiflora Rmu_sc0000061.1_g000039
rosa_roxburghii Rroxscaffold_7G00163250
rosa_rugosa Rorug06G0336800
rosa_samantha Rh6AG448400 Rh6BG452500 Rh6CG462100 Rh6DG449000
rosa_wichuraiana Rw6G039050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1150
AccB7I CCANNNNNTGG 2 cut(s) 151, 1370
AccI GTMKAC 1 cut(s) 543
AccII CGCG 3 cut(s) 111, 212, 390
AciI CCGC 8 cut(s) 69, 79, 109, 212, 237, 339, 390, 696
AclWI GGATC 1 cut(s) 1316
AcoI YGGCCR 2 cut(s) 1170, 1361
AcsI RAATTY 1 cut(s) 737
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 3 cut(s) 182, 781, 1480
AfiI CCNNNNNNNGG 3 cut(s) 151, 586, 1370
AflII CTTAAG 2 cut(s) 257, 788
AflIII ACRYGT 1 cut(s) 1071
AgsI TTSAA 5 cut(s) 328, 368, 377, 631, 1352
AhdI GACNNNNNGTC 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 9 cut(s) 139, 190, 291, 479, 680, 1121, 1145, 1358, 1486
AluI AGCT 9 cut(s) 139, 190, 291, 479, 680, 1121, 1145, 1358, 1486
AlwI GGATC 1 cut(s) 1316
AoxI GGCC 4 cut(s) 577, 1170, 1257, 1361
ApeKI GCWGC 2 cut(s) 890, 1355
ApoI RAATTY 1 cut(s) 737
AseI ATTAAT 3 cut(s) 554, 570, 614
AspLEI GCGC 1 cut(s) 733
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 4 cut(s) 55, 94, 763, 989
AxyI CCTNAGG 2 cut(s) 585, 1305
BalI TGGCCA 1 cut(s) 1172
BbsI GAAGAC 1 cut(s) 1479
BbvI GCAGC 2 cut(s) 902, 1367
BccI CCATC 2 cut(s) 1148, 1199
BceAI ACGGC 3 cut(s) 11, 39, 903
BcgI CGANNNNNNTGC 2 cut(s) 583, 617
BclI TGATCA 1 cut(s) 1123
BcnI CCSGG 1 cut(s) 285
BfaI CTAG 4 cut(s) 171, 623, 1079, 1317
BfmI CTRYAG 1 cut(s) 775
BfrI CTTAAG 2 cut(s) 257, 788
BfuAI ACCTGC 1 cut(s) 1150
BglI GCCNNNNNGGC 1 cut(s) 640
BisI GCNGC 4 cut(s) 238, 696, 891, 1356
BlsI GCNGC 4 cut(s) 239, 697, 892, 1357
Bme1390I CCNGG 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 1189
BmrFI CCNGG 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 1450
BmsI GCATC 6 cut(s) 69, 682, 736, 889, 1005, 1332
BmuI ACTGGG 1 cut(s) 1450
BpiI GAAGAC 1 cut(s) 1479
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 285
Bsa29I ATCGAT 2 cut(s) 354, 1280
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 284, 1183
BsaXI ACNNNNNCTCC 6 cut(s) 58, 88, 123, 153, 1224, 1254
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 586, 1370
Bse1I ACTGG 1 cut(s) 1445
Bse21I CCTNAGG 2 cut(s) 585, 1305
Bse3DI GCAATG 2 cut(s) 232, 782
Bse8I GATNNNNATC 1 cut(s) 164
BseCI ATCGAT 2 cut(s) 354, 1280
BseDI CCNNGG 2 cut(s) 284, 1183
BseGI GGATG 3 cut(s) 569, 697, 730
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 3 cut(s) 151, 586, 1370
BseMI GCAATG 2 cut(s) 232, 782
BseMII CTCAG 3 cut(s) 550, 599, 1319
BseNI ACTGG 1 cut(s) 1445
BseRI GAGGAG 4 cut(s) 170, 361, 1050, 1245
BseXI GCAGC 2 cut(s) 902, 1367
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 1 cut(s) 237
Bsh1236I CGCG 3 cut(s) 111, 212, 390
BshFI GGCC 4 cut(s) 579, 1172, 1259, 1363
BshVI ATCGAT 2 cut(s) 354, 1280
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 1387
BslI CCNNNNNNNGG 3 cut(s) 151, 586, 1370
BsmFI GGGAC 1 cut(s) 1387
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 4 cut(s) 579, 1172, 1259, 1363
Bsp1407I TGTACA 1 cut(s) 1478
Bsp143I GATC 4 cut(s) 165, 871, 1123, 1321
BspACI CCGC 8 cut(s) 69, 79, 109, 212, 237, 339, 390, 696
BspANI GGCC 4 cut(s) 579, 1172, 1259, 1363
BspCNI CTCAG 3 cut(s) 549, 598, 1318
BspDI ATCGAT 2 cut(s) 354, 1280
BspFNI CGCG 3 cut(s) 111, 212, 390
BspHI TCATGA 2 cut(s) 1111, 1496
BspLI GGNNCC 1 cut(s) 1189
BspMI ACCTGC 1 cut(s) 1150
BspPI GGATC 1 cut(s) 1316
BspTI CTTAAG 2 cut(s) 257, 788
BsrDI GCAATG 2 cut(s) 232, 782
BsrGI TGTACA 1 cut(s) 1478
BsrI ACTGG 1 cut(s) 1445
BssECI CCNNGG 2 cut(s) 284, 1183
BssMI GATC 4 cut(s) 165, 871, 1123, 1321
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 1183
Bst4CI ACNGT 8 cut(s) 180, 307, 498, 1051, 1058, 1378, 1469, 1478
Bst6I CTCTTC 1 cut(s) 1202
BstACI GRCGYC 1 cut(s) 52
BstAFI CTTAAG 2 cut(s) 257, 788
BstAPI GCANNNNNTGC 1 cut(s) 899
BstAUI TGTACA 1 cut(s) 1478
BstC8I GCNNGC 3 cut(s) 6, 963, 1020
BstDEI CTNAG 4 cut(s) 279, 536, 585, 1305
BstENI CCTNNNNNAGG 1 cut(s) 584
BstF5I GGATG 3 cut(s) 569, 697, 730
BstFNI CGCG 3 cut(s) 111, 212, 390
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 4 cut(s) 168, 874, 1126, 1324
BstMBI GATC 4 cut(s) 165, 871, 1123, 1321
BstMWI GCNNNNNNNGC 4 cut(s) 640, 887, 899, 1075
BstNSI RCATGY 3 cut(s) 604, 672, 1075
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 775
BstUI CGCG 3 cut(s) 111, 212, 390
BstV1I GCAGC 2 cut(s) 902, 1367
BstV2I GAAGAC 1 cut(s) 1479
Bsu15I ATCGAT 2 cut(s) 354, 1280
Bsu36I CCTNAGG 2 cut(s) 585, 1305
BsuRI GGCC 4 cut(s) 579, 1172, 1259, 1363
BsuTUI ATCGAT 2 cut(s) 354, 1280
BtsCI GGATG 3 cut(s) 569, 697, 730
BtsI GCAGTG 2 cut(s) 705, 1428
BtsIMutI CAGTG 2 cut(s) 705, 1428
BveI ACCTGC 1 cut(s) 1150
Cac8I GCNNGC 3 cut(s) 6, 963, 1020
CciI TCATGA 2 cut(s) 1111, 1496
CfoI GCGC 1 cut(s) 733
ClaI ATCGAT 2 cut(s) 354, 1280
CseI GACGC 3 cut(s) 60, 100, 926
Csp6I GTAC 3 cut(s) 181, 780, 1479
CviAII CATG 7 cut(s) 601, 669, 1072, 1112, 1218, 1237, 1497
CviQI GTAC 3 cut(s) 181, 780, 1479
DdeI CTNAG 4 cut(s) 279, 536, 585, 1305
DpnI GATC 4 cut(s) 167, 873, 1125, 1323
DpnII GATC 4 cut(s) 165, 871, 1123, 1321
DraI TTTAAA 1 cut(s) 1149
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 2 cut(s) 1170, 1361
Eam1104I CTCTTC 1 cut(s) 1202
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 1202
Eco130I CCWWGG 1 cut(s) 1183
Eco147I AGGCCT 2 cut(s) 579, 1259
Eco32I GATATC 1 cut(s) 814
Eco81I CCTNAGG 2 cut(s) 585, 1305
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 1183
ErhI CCWWGG 1 cut(s) 1183
FaeI CATG 7 cut(s) 604, 672, 1075, 1115, 1221, 1240, 1500
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FaqI GGGAC 1 cut(s) 1387
FatI CATG 7 cut(s) 600, 668, 1071, 1111, 1217, 1236, 1496
FauI CCCGC 3 cut(s) 86, 116, 332
FauNDI CATATG 1 cut(s) 313
FbaI TGATCA 1 cut(s) 1123
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 4 cut(s) 238, 696, 891, 1356
FokI GGATG 3 cut(s) 576, 704, 737
Fsp4HI GCNGC 4 cut(s) 238, 696, 891, 1356
FspBI CTAG 4 cut(s) 171, 623, 1079, 1317
GlaI GCGC 1 cut(s) 732
GluI GCNGC 4 cut(s) 238, 696, 891, 1356
GsaI CCCAGC 1 cut(s) 684
HaeIII GGCC 4 cut(s) 579, 1172, 1259, 1363
HapII CCGG 1 cut(s) 284
HgaI GACGC 3 cut(s) 60, 100, 926
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 7 cut(s) 604, 672, 1075, 1115, 1221, 1240, 1500
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HpaII CCGG 1 cut(s) 284
HphI GGTGA 4 cut(s) 55, 94, 763, 989
Hpy166II GTNNAC 2 cut(s) 544, 1054
Hpy188I TCNGA 5 cut(s) 45, 539, 841, 947, 1326
Hpy188III TCNNGA 4 cut(s) 515, 977, 1112, 1497
Hpy8I GTNNAC 2 cut(s) 544, 1054
Hpy99I CGWCG 6 cut(s) 54, 60, 116, 135, 272, 386
HpyAV CCTTC 7 cut(s) 19, 31, 322, 512, 553, 590, 715
HpyCH4III ACNGT 8 cut(s) 180, 307, 498, 1051, 1058, 1378, 1469, 1478
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 9 cut(s) 4, 254, 494, 604, 668, 703, 1063, 1452, 1465
HpyF10VI GCNNNNNNNGC 4 cut(s) 640, 887, 899, 1075
HpyF3I CTNAG 4 cut(s) 279, 536, 585, 1305
HpySE526I ACGT 1 cut(s) 619
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 7 cut(s) 604, 672, 1075, 1115, 1221, 1240, 1500
HspAI GCGC 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 4 cut(s) 165, 871, 1123, 1321
LmnI GCTCC 2 cut(s) 144, 288
Lsp1109I GCAGC 2 cut(s) 902, 1367
LweI GCATC 6 cut(s) 69, 682, 736, 889, 1005, 1332
MaeI CTAG 4 cut(s) 171, 623, 1079, 1317
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 3 cut(s) 307, 914, 1445
MalI GATC 4 cut(s) 167, 873, 1125, 1323
MboI GATC 4 cut(s) 165, 871, 1123, 1321
MboII GAAGA 3 cut(s) 1127, 1219, 1484
MlsI TGGCCA 1 cut(s) 1172
MluCI AATT 6 cut(s) 571, 611, 737, 910, 950, 1177
MluNI TGGCCA 1 cut(s) 1172
MlyI GAGTC 5 cut(s) 93, 242, 549, 1148, 1282
MmeI TCCRAC 2 cut(s) 142, 669
Mox20I TGGCCA 1 cut(s) 1172
MscI TGGCCA 1 cut(s) 1172
MseI TTAA 6 cut(s) 258, 554, 570, 614, 789, 1148
MslI CAYNNNNRTG 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 1172
MspCI CTTAAG 2 cut(s) 257, 788
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 451
MvnI CGCG 3 cut(s) 111, 212, 390
MwoI GCNNNNNNNGC 4 cut(s) 640, 887, 899, 1075
NciI CCSGG 1 cut(s) 285
NdeI CATATG 1 cut(s) 313
NdeII GATC 4 cut(s) 165, 871, 1123, 1321
NlaIII CATG 7 cut(s) 604, 672, 1075, 1115, 1221, 1240, 1500
NlaIV GGNNCC 1 cut(s) 1189
NmeAIII GCCGAG 2 cut(s) 500, 1339
NmuCI GTSAC 2 cut(s) 307, 914
NspI RCATGY 3 cut(s) 604, 672, 1075
OliI CACNNNNGTG 1 cut(s) 200
PagI TCATGA 2 cut(s) 1111, 1496
PceI AGGCCT 2 cut(s) 579, 1259
PciI ACATGT 1 cut(s) 1071
PctI GAATGC 1 cut(s) 451
PfeI GAWTC 5 cut(s) 351, 377, 803, 1108, 1415
PflFI GACNNNGTC 1 cut(s) 54
PflMI CCANNNNNTGG 2 cut(s) 151, 1370
PkrI GCNGC 4 cut(s) 239, 697, 892, 1357
PleI GAGTC 5 cut(s) 93, 242, 548, 1147, 1282
PpsI GAGTC 5 cut(s) 93, 242, 548, 1147, 1282
PscI ACATGT 1 cut(s) 1071
PshBI ATTAAT 3 cut(s) 554, 570, 614
PspFI CCCAGC 1 cut(s) 680
PspN4I GGNNCC 1 cut(s) 1189
PsrI GAACNNNNNNTAC 4 cut(s) 868, 900, 1180, 1212
PsyI GACNNNGTC 1 cut(s) 54
RsaI GTAC 3 cut(s) 182, 781, 1480
RsaNI GTAC 3 cut(s) 181, 780, 1479
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 6 cut(s) 258, 554, 570, 614, 789, 1148
SatI GCNGC 4 cut(s) 238, 696, 891, 1356
Sau3AI GATC 4 cut(s) 165, 871, 1123, 1321
SchI GAGTC 5 cut(s) 93, 242, 549, 1148, 1282
ScrFI CCNGG 1 cut(s) 285
SfaNI GCATC 6 cut(s) 69, 682, 736, 889, 1005, 1332
SfcI CTRYAG 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 3 cut(s) 92, 257, 788
SmoI CTYRAG 3 cut(s) 92, 257, 788
Sse9I AATT 6 cut(s) 571, 611, 737, 910, 950, 1177
SseBI AGGCCT 2 cut(s) 579, 1259
SsiI CCGC 8 cut(s) 69, 79, 109, 212, 237, 339, 390, 696
SspMI CTAG 4 cut(s) 171, 623, 1079, 1317
StuI AGGCCT 2 cut(s) 579, 1259
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 1183
TaaI ACNGT 8 cut(s) 180, 307, 498, 1051, 1058, 1378, 1469, 1478
TaiI ACGT 1 cut(s) 622
TaqI TCGA 8 cut(s) 246, 267, 354, 384, 514, 874, 1228, 1280
TasI AATT 6 cut(s) 571, 611, 737, 910, 950, 1177
TatI WGTACW 2 cut(s) 779, 1478
TauI GCSGC 2 cut(s) 240, 698
TfiI GAWTC 5 cut(s) 351, 377, 803, 1108, 1415
Tru1I TTAA 6 cut(s) 258, 554, 570, 614, 789, 1148
Tru9I TTAA 6 cut(s) 258, 554, 570, 614, 789, 1148
TscAI CASTG 2 cut(s) 705, 1428
TseFI GTSAC 2 cut(s) 307, 914
TseI GCWGC 2 cut(s) 890, 1355
Tsp45I GTSAC 2 cut(s) 307, 914
TspDTI ATGAA 9 cut(s) 221, 572, 734, 741, 815, 856, 860, 1100, 1128
TspGWI ACGGA 1 cut(s) 370
TspRI CASTG 2 cut(s) 705, 1428
Tth111I GACNNNGTC 1 cut(s) 54
Van91I CCANNNNNTGG 2 cut(s) 151, 1370
Vha464I CTTAAG 2 cut(s) 257, 788
VspI ATTAAT 3 cut(s) 554, 570, 614
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 1 cut(s) 737
XceI RCATGY 3 cut(s) 604, 672, 1075
XmiI GTMKAC 1 cut(s) 543
XspI CTAG 4 cut(s) 171, 623, 1079, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.