Rh6CG462100

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
63543233 .. 63547604
4372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG462100.1

Sequence Viewer

Length: 1341 bp
ATGCAAGCCTTCTCGCCCTCCTTCGCCGTCTGTTCCTATTTTCCGATACGACGCCGTCGCATCACCACCGCCTCTCCCCGCAAATCCAACCTCAAGCGACTCACCTCCCGCGTCGTCCAACTCACTCGCCGACGACAGCTCCACCAGATAATGGAGGAGATAGAGATCGCTAGAGAACGATACGGGAAGCTGAACACGATAGTGATGAACGCGGTGGTGGAGGCGTGTGTCCATTGCGGCGACATCGACTCTGCACTTAAGGTGTTCGACGAAATGTCTAAGCCGGGGAGCTGTGGCGTTGATACTGTCACATATGCTACCCTTTTGAAGGGATTGGGCGGGGCGAGGAGAATCGATGAGGCATTTGAAGTGCTTGAATCCGTCGAACGCGGTGTTGCTGTGGGAAGTCCAAAGTTGTCAGCACCTCTTATTTTTGGACTGCTGAATGCTTTGGTTGAAGCAGGAGATTTACGCCGAGCTAATGGACTTCTTGCACGGTATGGTTTTCTGCTTCGAGAAGGTGGCAGTCTTTCGCTCAGAGTCTACAACTTATTAATGAAGGGATGTATTAATTCAGGCCTTCCTCAGGGTGCGATAGACATGCACAACGAATTAATACGTCTAGGGTTGAAGCCTGATAGGCTCACCTATAATACTCTAATATCTGCATGTGTAAAAGCTGGGAAGTTGGATGCCGCAATGCAATACTTTGAGGAAATGAAGGATGAAGCGCAGAAATTTAGTGATGCTGGTCTATTCCCTGATGTCATCACCTATAGTACATTGCTTAAGGGTTTTGGGGATTCCAAAGATATCCTTATGGTTCATAAGATTGTTTCAGAAATGAAAACATATATTGGTTTGTTCATTGATCGAACAGCATATATGGCAGCAGTTGATGCTTTGCTAAATTGTGACGCAATAAAGGGTGCTTTATGTATTTTCGGAGAATTATTAAAGCAGGCTGGTGGAAATCCAGAGTTGCGACCCAAACCTCACCTCTATCTTTCCTTGATGCGTGCCTTTGCTGTTAGAGGAGATTATGACACAGTAAACAGTCTGCATAAGCACATGTGGCTAGATACTGCTGGAACTATCTACCCAATGATTCATGAAGAAGCTGATCATCTTGTAATGGAGTCAGCTTTAAATGATGGGCAGGTAGATTTGGCCAAAAATTACCTTGGAACCATCATTACAAGGTGGAAGAGAATAGCGTGGACAAGTCGAGGAGGCATGGTTGCTCTACGCACAGAGGCCTTGTTGGGAAACACAAAATCGATATTGACTCCTTATCTACTTCCTCAGGTCCTTGCATATTCCTTGCCTTTAGAATTGTAG

Protein Analysis

446

Amino Acids

49.41

Weight (kDa)

8.85

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 65 - 112 4.5e-09 PPR repeat family
PPR_2 PF13041 181 - 226 3.3e-10 PPR repeat family
PPR_3 PF13812 204 - 243 1.2e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 209 - 241 6.8e-10 PPR repeat
PPR_2 PF13041 215 - 266 7.9e-12 PPR repeat family
PPR PF01535 216 - 242 1.2e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014256)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10690 AT5G10690
fragaria_vesca FvH4_2g36670 FvH4_2g36670
malus_domestica MD08G1128000.v1.1
prunus_persica Prupe.1G459800_v2.0.a1
pyrus_communis pycom08g10700
rosa_chinensis RchiOBHm_Chr6g0305021
rosa_laevigata RLG00000010927
rosa_multiflora Rmu_sc0000061.1_g000039
rosa_roxburghii Rroxscaffold_7G00163250
rosa_rugosa Rorug06G0336800
rosa_samantha Rh6AG448400 Rh6BG452500 Rh6CG462100 Rh6DG449000
rosa_wichuraiana Rw6G039050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1150
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 543
AccII CGCG 3 cut(s) 111, 212, 390
AciI CCGC 8 cut(s) 69, 79, 109, 212, 237, 339, 390, 696
AcoI YGGCCR 1 cut(s) 1170
AcsI RAATTY 1 cut(s) 737
AcyI GRCGYC 1 cut(s) 52
AfaI GTAC 1 cut(s) 781
AfiI CCNNNNNNNGG 3 cut(s) 151, 328, 586
AflII CTTAAG 2 cut(s) 257, 788
AflIII ACRYGT 1 cut(s) 1071
AgsI TTSAA 5 cut(s) 328, 368, 377, 458, 631
AhdI GACNNNNNGTC 1 cut(s) 274
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 7 cut(s) 139, 190, 291, 479, 680, 1121, 1145
AluI AGCT 7 cut(s) 139, 190, 291, 479, 680, 1121, 1145
AoxI GGCC 3 cut(s) 577, 1170, 1257
ApeKI GCWGC 1 cut(s) 890
ApoI RAATTY 1 cut(s) 737
AseI ATTAAT 3 cut(s) 554, 570, 614
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 1309
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 5 cut(s) 55, 94, 637, 763, 989
AvaII GGWCC 1 cut(s) 1309
AxyI CCTNAGG 2 cut(s) 585, 1305
BalI TGGCCA 1 cut(s) 1172
BbvI GCAGC 1 cut(s) 902
BccI CCATC 2 cut(s) 1148, 1199
BceAI ACGGC 2 cut(s) 11, 39
BcgI CGANNNNNNTGC 2 cut(s) 583, 617
BclI TGATCA 1 cut(s) 1123
BcnI CCSGG 1 cut(s) 285
BfaI CTAG 3 cut(s) 171, 623, 1079
BfmI CTRYAG 1 cut(s) 775
BfrI CTTAAG 2 cut(s) 257, 788
BfuAI ACCTGC 1 cut(s) 1150
BglI GCCNNNNNGGC 1 cut(s) 640
BisI GCNGC 3 cut(s) 238, 696, 891
BlsI GCNGC 3 cut(s) 239, 697, 892
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 1 cut(s) 1309
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 1309
BmiI GGNNCC 1 cut(s) 1189
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 5 cut(s) 69, 682, 736, 889, 1005
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 285
Bsa29I ATCGAT 2 cut(s) 354, 1280
BsaBI GATNNNNATC 1 cut(s) 164
BsaHI GRCGYC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 284, 1183
BsaXI ACNNNNNCTCC 6 cut(s) 58, 88, 123, 153, 1224, 1254
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 328, 586
Bse21I CCTNAGG 2 cut(s) 585, 1305
Bse3DI GCAATG 3 cut(s) 232, 705, 782
Bse8I GATNNNNATC 1 cut(s) 164
BseCI ATCGAT 2 cut(s) 354, 1280
BseDI CCNNGG 2 cut(s) 284, 1183
BseGI GGATG 3 cut(s) 569, 697, 730
BseJI GATNNNNATC 1 cut(s) 164
BseLI CCNNNNNNNGG 3 cut(s) 151, 328, 586
BseMI GCAATG 3 cut(s) 232, 705, 782
BseMII CTCAG 3 cut(s) 550, 599, 1319
BseRI GAGGAG 4 cut(s) 170, 361, 1050, 1245
BseXI GCAGC 1 cut(s) 902
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 1 cut(s) 237
Bsh1236I CGCG 3 cut(s) 111, 212, 390
BshFI GGCC 3 cut(s) 579, 1172, 1259
BshVI ATCGAT 2 cut(s) 354, 1280
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 151, 328, 586
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 3 cut(s) 579, 1172, 1259
Bsp143I GATC 3 cut(s) 165, 871, 1123
BspACI CCGC 8 cut(s) 69, 79, 109, 212, 237, 339, 390, 696
BspANI GGCC 3 cut(s) 579, 1172, 1259
BspCNI CTCAG 3 cut(s) 549, 598, 1318
BspDI ATCGAT 2 cut(s) 354, 1280
BspFNI CGCG 3 cut(s) 111, 212, 390
BspHI TCATGA 1 cut(s) 1111
BspLI GGNNCC 1 cut(s) 1189
BspMI ACCTGC 1 cut(s) 1150
BspTI CTTAAG 2 cut(s) 257, 788
BsrDI GCAATG 3 cut(s) 232, 705, 782
BssECI CCNNGG 2 cut(s) 284, 1183
BssMI GATC 3 cut(s) 165, 871, 1123
BssNI GRCGYC 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 1183
Bst4CI ACNGT 4 cut(s) 307, 498, 1051, 1058
Bst6I CTCTTC 1 cut(s) 1202
BstACI GRCGYC 1 cut(s) 52
BstAFI CTTAAG 2 cut(s) 257, 788
BstAPI GCANNNNNTGC 1 cut(s) 899
BstC8I GCNNGC 3 cut(s) 6, 963, 1020
BstDEI CTNAG 4 cut(s) 279, 536, 585, 1305
BstENI CCTNNNNNAGG 2 cut(s) 326, 584
BstF5I GGATG 3 cut(s) 569, 697, 730
BstFNI CGCG 3 cut(s) 111, 212, 390
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 3 cut(s) 168, 874, 1126
BstMBI GATC 3 cut(s) 165, 871, 1123
BstMWI GCNNNNNNNGC 4 cut(s) 640, 887, 899, 1075
BstNSI RCATGY 3 cut(s) 604, 672, 1075
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 775
BstUI CGCG 3 cut(s) 111, 212, 390
BstV1I GCAGC 1 cut(s) 902
Bsu15I ATCGAT 2 cut(s) 354, 1280
Bsu36I CCTNAGG 2 cut(s) 585, 1305
BsuRI GGCC 3 cut(s) 579, 1172, 1259
BsuTUI ATCGAT 2 cut(s) 354, 1280
BtsCI GGATG 3 cut(s) 569, 697, 730
BveI ACCTGC 1 cut(s) 1150
Cac8I GCNNGC 3 cut(s) 6, 963, 1020
CciI TCATGA 1 cut(s) 1111
CfoI GCGC 1 cut(s) 733
Cfr13I GGNCC 1 cut(s) 1309
ClaI ATCGAT 2 cut(s) 354, 1280
CseI GACGC 3 cut(s) 60, 100, 926
Csp6I GTAC 1 cut(s) 780
CviAII CATG 5 cut(s) 601, 669, 1072, 1112, 1237
CviQI GTAC 1 cut(s) 780
DdeI CTNAG 4 cut(s) 279, 536, 585, 1305
DpnI GATC 3 cut(s) 167, 873, 1125
DpnII GATC 3 cut(s) 165, 871, 1123
DraI TTTAAA 1 cut(s) 1149
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 1170
Eam1104I CTCTTC 1 cut(s) 1202
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 1202
Eco130I CCWWGG 1 cut(s) 1183
Eco147I AGGCCT 2 cut(s) 579, 1259
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 1 cut(s) 1309
Eco81I CCTNAGG 2 cut(s) 585, 1305
EcoNI CCTNNNNNAGG 2 cut(s) 326, 584
EcoO109I RGGNCCY 1 cut(s) 1309
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 1183
ErhI CCWWGG 1 cut(s) 1183
FaeI CATG 5 cut(s) 604, 672, 1075, 1115, 1240
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FatI CATG 5 cut(s) 600, 668, 1071, 1111, 1236
FauI CCCGC 3 cut(s) 86, 116, 332
FauNDI CATATG 1 cut(s) 313
FbaI TGATCA 1 cut(s) 1123
FblI GTMKAC 1 cut(s) 543
Fnu4HI GCNGC 3 cut(s) 238, 696, 891
FokI GGATG 3 cut(s) 576, 704, 737
Fsp4HI GCNGC 3 cut(s) 238, 696, 891
FspBI CTAG 3 cut(s) 171, 623, 1079
GlaI GCGC 1 cut(s) 732
GluI GCNGC 3 cut(s) 238, 696, 891
GsaI CCCAGC 1 cut(s) 684
HaeIII GGCC 3 cut(s) 579, 1172, 1259
HapII CCGG 1 cut(s) 284
HgaI GACGC 3 cut(s) 60, 100, 926
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 5 cut(s) 604, 672, 1075, 1115, 1240
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HinfI GANTC 9 cut(s) 99, 248, 351, 377, 540, 803, 1108, 1139, 1288
HpaII CCGG 1 cut(s) 284
HphI GGTGA 5 cut(s) 55, 94, 637, 763, 989
Hpy166II GTNNAC 3 cut(s) 544, 1054, 1221
Hpy188I TCNGA 4 cut(s) 45, 539, 841, 947
Hpy188III TCNNGA 3 cut(s) 515, 977, 1112
Hpy8I GTNNAC 3 cut(s) 544, 1054, 1221
Hpy99I CGWCG 6 cut(s) 54, 60, 116, 135, 272, 386
HpyAV CCTTC 7 cut(s) 19, 31, 322, 512, 553, 590, 715
HpyCH4III ACNGT 4 cut(s) 307, 498, 1051, 1058
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 8 cut(s) 4, 254, 494, 604, 668, 703, 1063, 1316
HpyF10VI GCNNNNNNNGC 4 cut(s) 640, 887, 899, 1075
HpyF3I CTNAG 4 cut(s) 279, 536, 585, 1305
HpySE526I ACGT 1 cut(s) 619
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 5 cut(s) 604, 672, 1075, 1115, 1240
HspAI GCGC 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 1123
Kzo9I GATC 3 cut(s) 165, 871, 1123
LmnI GCTCC 2 cut(s) 144, 288
Lsp1109I GCAGC 1 cut(s) 902
LweI GCATC 5 cut(s) 69, 682, 736, 889, 1005
MaeI CTAG 3 cut(s) 171, 623, 1079
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 2 cut(s) 307, 914
MalI GATC 3 cut(s) 167, 873, 1125
MboI GATC 3 cut(s) 165, 871, 1123
MboII GAAGA 2 cut(s) 1127, 1219
MlsI TGGCCA 1 cut(s) 1172
MluCI AATT 7 cut(s) 571, 611, 737, 910, 950, 1177, 1334
MluNI TGGCCA 1 cut(s) 1172
MlyI GAGTC 5 cut(s) 93, 242, 549, 1148, 1282
MmeI TCCRAC 3 cut(s) 111, 142, 669
Mox20I TGGCCA 1 cut(s) 1172
MscI TGGCCA 1 cut(s) 1172
MseI TTAA 7 cut(s) 258, 554, 570, 614, 789, 956, 1148
MslI CAYNNNNRTG 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 1172
MspCI CTTAAG 2 cut(s) 257, 788
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 451
MvnI CGCG 3 cut(s) 111, 212, 390
MwoI GCNNNNNNNGC 4 cut(s) 640, 887, 899, 1075
NciI CCSGG 1 cut(s) 285
NdeI CATATG 1 cut(s) 313
NdeII GATC 3 cut(s) 165, 871, 1123
NlaIII CATG 5 cut(s) 604, 672, 1075, 1115, 1240
NlaIV GGNNCC 1 cut(s) 1189
NmeAIII GCCGAG 1 cut(s) 500
NmuCI GTSAC 2 cut(s) 307, 914
NspI RCATGY 3 cut(s) 604, 672, 1075
OliI CACNNNNGTG 1 cut(s) 200
PagI TCATGA 1 cut(s) 1111
PceI AGGCCT 2 cut(s) 579, 1259
PciI ACATGT 1 cut(s) 1071
PctI GAATGC 1 cut(s) 451
PfeI GAWTC 4 cut(s) 351, 377, 803, 1108
PflFI GACNNNGTC 1 cut(s) 54
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 3 cut(s) 239, 697, 892
PleI GAGTC 5 cut(s) 93, 242, 548, 1147, 1282
PpsI GAGTC 5 cut(s) 93, 242, 548, 1147, 1282
PpuMI RGGWCCY 1 cut(s) 1309
PscI ACATGT 1 cut(s) 1071
PshBI ATTAAT 3 cut(s) 554, 570, 614
Psp5II RGGWCCY 1 cut(s) 1309
PspFI CCCAGC 1 cut(s) 680
PspN4I GGNNCC 1 cut(s) 1189
PspPI GGNCC 1 cut(s) 1309
PspPPI RGGWCCY 1 cut(s) 1309
PsrI GAACNNNNNNTAC 2 cut(s) 1180, 1212
PsyI GACNNNGTC 1 cut(s) 54
RsaI GTAC 1 cut(s) 781
RsaNI GTAC 1 cut(s) 780
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 7 cut(s) 258, 554, 570, 614, 789, 956, 1148
SatI GCNGC 3 cut(s) 238, 696, 891
Sau3AI GATC 3 cut(s) 165, 871, 1123
Sau96I GGNCC 1 cut(s) 1309
SchI GAGTC 5 cut(s) 93, 242, 549, 1148, 1282
ScrFI CCNGG 1 cut(s) 285
SfaNI GCATC 5 cut(s) 69, 682, 736, 889, 1005
SfcI CTRYAG 1 cut(s) 775
SinI GGWCC 1 cut(s) 1309
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 3 cut(s) 92, 257, 788
SmoI CTYRAG 3 cut(s) 92, 257, 788
Sse9I AATT 7 cut(s) 571, 611, 737, 910, 950, 1177, 1334
SseBI AGGCCT 2 cut(s) 579, 1259
SsiI CCGC 8 cut(s) 69, 79, 109, 212, 237, 339, 390, 696
SspMI CTAG 3 cut(s) 171, 623, 1079
StuI AGGCCT 2 cut(s) 579, 1259
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 1183
TaaI ACNGT 4 cut(s) 307, 498, 1051, 1058
TaiI ACGT 1 cut(s) 622
TaqI TCGA 8 cut(s) 246, 267, 354, 384, 514, 874, 1228, 1280
TasI AATT 7 cut(s) 571, 611, 737, 910, 950, 1177, 1334
TatI WGTACW 1 cut(s) 779
TauI GCSGC 2 cut(s) 240, 698
TfiI GAWTC 4 cut(s) 351, 377, 803, 1108
Tru1I TTAA 7 cut(s) 258, 554, 570, 614, 789, 956, 1148
Tru9I TTAA 7 cut(s) 258, 554, 570, 614, 789, 956, 1148
TseFI GTSAC 2 cut(s) 307, 914
TseI GCWGC 1 cut(s) 890
Tsp45I GTSAC 2 cut(s) 307, 914
TspDTI ATGAA 9 cut(s) 221, 572, 734, 741, 815, 856, 860, 1100, 1128
TspGWI ACGGA 1 cut(s) 370
Tth111I GACNNNGTC 1 cut(s) 54
Van91I CCANNNNNTGG 1 cut(s) 151
Vha464I CTTAAG 2 cut(s) 257, 788
VpaK11BI GGWCC 1 cut(s) 1309
VspI ATTAAT 3 cut(s) 554, 570, 614
XagI CCTNNNNNAGG 2 cut(s) 326, 584
XapI RAATTY 1 cut(s) 737
XceI RCATGY 3 cut(s) 604, 672, 1075
XmiI GTMKAC 1 cut(s) 543
XspI CTAG 3 cut(s) 171, 623, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.