Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014256

Physical Location & Seq

Genomic Coordinates Forward (+)

48881939 .. 48884114

Gene Structure 2176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0336800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATGCTGTGGCTCAGTGGCGGAACCAGTGGTTTGACTACACCCATTATCTGCGACGAGAGGGATTCTTGGATGATCAGTTTGCACAACTGAAGAAGCTCCAGGATGAAAACAGCCCAGATTTCGTGGTTGAGGTTGTTTCTCTGTTCTTTCAAGATTCTGAGAAGCTTCTCAACAATATGGCTAGGGCTCTAGAGCAGAATGTTGTAGATTTCAAACAAGTAGATGCCTGTGTCCATCAATTCAAGGGTAGCAGTGCCTGGATAGGTGCAATGAGACTTAAAAATGTATGCATCAACTTCAGAAATTATTGTGAGGCGCAGAACCTTGAGGGGTGTTTGGGGTGTTTGCAACAAGTACGACAAGAATGCTTGGCATTAAAGAACAATCTTGAAAACTTGTTTAGGTTGGAGCAACAGATACTGGCTGCTGGTGGATCAATTCCTGTTATGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS PPR PPR_2

Protein Analysis

152

Amino Acids

17.6

Weight (kDa)

5.07

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	45 - 129	2.7e-16	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0014256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10690 AT5G10690
fragaria_vesca	FvH4_2g36670 FvH4_2g36670
malus_domestica	MD08G1128000.v1.1
prunus_persica	Prupe.1G459800_v2.0.a1
pyrus_communis	pycom08g10700
rosa_chinensis	RchiOBHm_Chr6g0305021
rosa_laevigata	RLG00000010927
rosa_multiflora	Rmu_sc0000061.1_g000039
rosa_roxburghii	Rroxscaffold_7G00163250
rosa_rugosa	Rorug06G0336800
rosa_samantha	Rh6AG448400 Rh6BG452500 Rh6CG462100 Rh6DG449000
rosa_wichuraiana	Rw6G039050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	445
AcuI	CTGAAG	2 cut(s)	113, 286
AfaI	GTAC	1 cut(s)	360
AgsI	TTSAA	4 cut(s)	155, 217, 247, 395
AjnI	CCWGG	2 cut(s)	102, 260
AluBI	AGCT	2 cut(s)	100, 169
AluI	AGCT	2 cut(s)	100, 169
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	445
AlwNI	CAGNNNCTG	2 cut(s)	261, 424
ApeKI	GCWGC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	246
BcgI	CGANNNNNNTGC	2 cut(s)	351, 385
BciT130I	CCWGG	2 cut(s)	104, 262
BclI	TGATCA	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	186, 194
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	104, 262
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	104, 262
BmsI	GCATC	2 cut(s)	217, 303
BpmI	CTGGAG	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	350
Bse1I	ACTGG	2 cut(s)	28, 429
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	104, 262
BseGI	GGATG	3 cut(s)	10, 79, 112
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	29, 153
BseNI	ACTGG	2 cut(s)	28, 429
BseXI	GCAGC	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	271
BsmI	GAATGC	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	76, 437
BspACI	CCGC	1 cut(s)	22
BspCNI	CTCAG	2 cut(s)	28, 154
BspLI	GGNNCC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	28, 429
BssMI	GATC	2 cut(s)	76, 437
Bst2UI	CCWGG	2 cut(s)	104, 262
BstDEI	CTNAG	2 cut(s)	15, 162
BstF5I	GGATG	3 cut(s)	10, 79, 112
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	2 cut(s)	79, 440
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	2 cut(s)	76, 437
BstNI	CCWGG	2 cut(s)	104, 262
BstSCI	CCNGG	2 cut(s)	102, 260
BstV1I	GCAGC	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	10, 79, 112
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	3 cut(s)	23, 35, 262
CaiI	CAGNNNCTG	2 cut(s)	261, 424
CfoI	GCGC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	359
CviJI	RGCY	7 cut(s)	14, 100, 117, 169, 185, 191, 428
CviKI_1	RGCY	7 cut(s)	14, 100, 117, 169, 185, 191, 428
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	2 cut(s)	15, 162
DpnI	GATC	2 cut(s)	78, 439
DpnII	GATC	2 cut(s)	76, 437
EciI	GGCGGA	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	113, 286
EcoRII	CCWGG	2 cut(s)	102, 260
EcoT22I	ATGCAT	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	193
FaiI	YATR	3 cut(s)	182, 292, 452
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	3 cut(s)	17, 86, 119
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	2 cut(s)	186, 194
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	322
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	2 cut(s)	66, 158
Hpy188I	TCNGA	2 cut(s)	163, 305
Hpy188III	TCNNGA	3 cut(s)	155, 194, 392
Hpy99I	CGWCG	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	86, 272, 294, 352
HpyF3I	CTNAG	2 cut(s)	15, 162
HspAI	GCGC	1 cut(s)	320
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	76, 437
LmnI	GCTCC	2 cut(s)	105, 412
LpnPI	CCDG	9 cut(s)	41, 89, 116, 132, 244, 247, 274, 410, 417
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	2 cut(s)	217, 303
MaeI	CTAG	2 cut(s)	186, 194
MalI	GATC	2 cut(s)	78, 439
MboI	GATC	2 cut(s)	76, 437
MboII	GAAGA	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	3 cut(s)	242, 307, 441
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	4 cut(s)	55, 127, 310, 325
Mph1103I	ATGCAT	1 cut(s)	296
MseI	TTAA	2 cut(s)	282, 380
MspR9I	CCNGG	2 cut(s)	104, 262
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	2 cut(s)	104, 262
NdeII	GATC	2 cut(s)	76, 437
NlaIV	GGNNCC	1 cut(s)	26
NsiI	ATGCAT	1 cut(s)	296
PctI	GAATGC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	66, 158
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	102, 260
PspGI	CCWGG	2 cut(s)	102, 260
PspN4I	GGNNCC	1 cut(s)	26
PstNI	CAGNNNCTG	2 cut(s)	261, 424
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	282, 380
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	76, 437
ScrFI	CCNGG	2 cut(s)	104, 262
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	6 cut(s)	102, 138, 171, 271, 330, 410
SfaNI	GCATC	2 cut(s)	217, 303
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	242, 307, 441
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	2 cut(s)	186, 194
StyD4I	CCNGG	2 cut(s)	102, 260
TasI	AATT	3 cut(s)	242, 307, 441
TfiI	GAWTC	2 cut(s)	66, 158
Tru1I	TTAA	2 cut(s)	282, 380
Tru9I	TTAA	2 cut(s)	282, 380
TscAI	CASTG	3 cut(s)	23, 35, 262
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	3 cut(s)	23, 35, 262
XbaI	TCTAGA	1 cut(s)	193
XspI	CTAG	2 cut(s)	186, 194
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.