Rmu_sc0000098.1_g000006

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000098.1
OG0015656
Physical Location & Seq
Reverse (-)
57897 .. 59714
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1818 bp
atgcctagattccccaagtttgcttcagcagctgccttagctgataccacaattaccgagacccttatacaggaagtgccacaacctcgaattcaaccccccgaactgttcatcactgccctgcagagctctagaaacatcttccacattagacaagtccatgcccaagttgctgtcaatggaatcctccaaaacctcactgttgcaaacaagctcctctacatgtatgcacagcataaggtgctgggtgacgcttatgctctgtttagtgggatggtggaaaagaatgcagtttcttggagtgtaatggttggtgggtttgtgaagggtggtgattttgctaatggttttagaacatttagggagctcattcgatgtgggatgccgccggataattacacattgccttttgtgataagggcttgtagggatttgatggacctgaaaattggcaggttggttcatgacattgttctgaaacatgggatgctttcggataattttgtatgtgctgctctggtggacatgtatgcgaaatgtagggttatagatgatgcccgccaactgtttgataatatgcctaacagggatattgtaacatggacagtgatgattggtgggtttgctgagtgcaggaatgcgagtgagtctttggttctgtttgataggatgatagatgaaggtgttgttccagataaggttactatggtgaccgttgttaatgcttgtgcaaagtttggggctatgcataaggccagacttgttcatgattatatacgtaggaataagttttacttggatgtgatcttggggacggcgatgattgatatgtatgctaagtgtgggtgtgttgattccgcaagggaaattttcgacaggatgcaagtgaggaatgttagaacatggagtgccctgattgcggcttatggttatcacgggcgtggcaacgaagctcttgagatattcgagatgatgttgagcagtggagtgttaccaaatgcagttacatttatttcactattatatgcttgtagtcatgctggcttgactgaagagggtctgcggtttttctcattgatgtcggatgaatatgctgtcagggcagatgttaaacattatacttgtatggtggatcttctaggtcgtgctgggaaacttgatgaggccttgaaattggctgagagtatggcagttgagaaagatgaggggttatggagtgctttgcttgcggcatgtagagtccatgggaatctagacctagcagaaaaggcagctagttcactgcttgaactacagcctgaaaacccagggcattacgtattgctttcaaatatttatgcaagagcagggaggtggaaagaagtggcgaagatgagaaatctgatgacccagaggagactaaagaaaattcctggttatacttggattgagatagatgacaaaaactaccaatttggtgttgctgatagaactcatccacaatcagaaaacatttatgctatgctgaagagtttgagtcacaaactggagttggctggttatgtccctgatacgaattttgtgttgcatgatgttgatgaggaagttaaagtggatatgttgtacacccatagtgagaagttggcaattgcatttggccttatcgccacgtctaatggaactcctattagaattacaaagaatcttagggtttgtggtgactgccacacatttagcaagtttgtatcagctattacaaatagggagattattgtccgtgatgcaaaccggtttcacctcttcagggaagggacctgctcatgtggagattattggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

605

Amino Acids

68.03

Weight (kDa)

7.25

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 196 - 245 3.7e-09 PPR repeat family
PPR_2 PF13041 298 - 345 3.5e-10 PPR repeat family
PPR PF01535 301 - 330 9.9e-07 PPR repeat
E_motif PF20431 415 - 477 2.7e-24 E motif
DYW_deaminase PF14432 513 - 605 1.8e-44 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19240 FvH4_6g19240 FvH4_6g19240
malus_domestica MD12G1028100.v1.1
prunus_persica Prupe.7G103500_v2.0.a1
pyrus_communis pycom12g02690
rosa_chinensis RchiOBHm_Chr3g0474341
rosa_laevigata RLG00000023931
rosa_multiflora Rmu_sc0000098.1_g000006 Rmu_sc0004507.1_g000010 Rmu_sc0031141.1_g000001
rosa_roxburghii Rroxscaffold_6G00407330
rosa_rugosa Rorug03G0140200
rosa_samantha Rh3BG220200 Rh3DG215900
rosa_wichuraiana Rw3G017420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 444, 1802
AciI CCGC 6 cut(s) 386, 559, 858, 920, 1063, 1229
AclWI GGATC 1 cut(s) 1140
AcsI RAATTY 4 cut(s) 90, 867, 1407, 1555
AcuI CTGAAG 4 cut(s) 9, 1071, 1526, 1765
AfaI GTAC 1 cut(s) 1604
AfiI CCNNNNNNNGG 3 cut(s) 70, 919, 1783
AflIII ACRYGT 2 cut(s) 222, 525
AgeI ACCGGT 1 cut(s) 1767
AgsI TTSAA 4 cut(s) 95, 1171, 1289, 1329
AjiI CACGTC 1 cut(s) 1650
AjnI CCWGG 2 cut(s) 1306, 1411
AleI CACNNNNGTG 1 cut(s) 939
AluBI AGCT 8 cut(s) 32, 41, 129, 214, 367, 953, 1274, 1730
AluI AGCT 8 cut(s) 32, 41, 129, 214, 367, 953, 1274, 1730
Alw21I GWGCWC 2 cut(s) 131, 369
Alw26I GTCTC 2 cut(s) 53, 1390
AlwI GGATC 1 cut(s) 1140
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 3 cut(s) 753, 1164, 1636
ApeKI GCWGC 4 cut(s) 29, 32, 512, 1271
ApoI RAATTY 4 cut(s) 90, 867, 1407, 1555
AsiGI ACCGGT 1 cut(s) 1767
AspS9I GGNCC 2 cut(s) 439, 1791
AsuHPI GGTGA 5 cut(s) 260, 344, 721, 1709, 1766
AvaII GGWCC 2 cut(s) 439, 1791
BaeGI GKGCMC 1 cut(s) 913
BanII GRGCYC 2 cut(s) 131, 369
Bbv12I GWGCWC 2 cut(s) 131, 369
BbvI GCAGC 4 cut(s) 19, 41, 499, 1283
BccI CCATC 2 cut(s) 268, 430
BceAI ACGGC 1 cut(s) 831
BciT130I CCWGG 2 cut(s) 1308, 1413
BcoDI GTCTC 2 cut(s) 53, 1390
BfaI CTAG 6 cut(s) 6, 132, 1139, 1253, 1259, 1275
BfmI CTRYAG 2 cut(s) 122, 1292
BfuAI ACCTGC 2 cut(s) 444, 1802
BisI GCNGC 7 cut(s) 30, 33, 386, 513, 921, 1230, 1272
BlsI GCNGC 7 cut(s) 31, 34, 387, 514, 922, 1231, 1273
Bme1390I CCNGG 2 cut(s) 1308, 1413
Bme18I GGWCC 2 cut(s) 439, 1791
BmgBI CACGTC 1 cut(s) 1650
BmgT120I GGNCC 2 cut(s) 439, 1791
BmiI GGNNCC 1 cut(s) 1792
BmrFI CCNGG 2 cut(s) 1308, 1413
BmsI GCATC 5 cut(s) 372, 477, 544, 870, 1750
BpmI CTGGAG 1 cut(s) 1547
Bpu10I CCTNAGC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 977
BsaAI YACGTR 2 cut(s) 779, 1318
BsaI GGTCTC 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 1243, 1306, 1307
BsaWI WCCGGW 1 cut(s) 1767
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 919, 1783
Bse118I RCCGGY 1 cut(s) 1767
Bse1I ACTGG 1 cut(s) 1530
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 2 cut(s) 1308, 1413
BseDI CCNNGG 3 cut(s) 1243, 1306, 1307
BseGI GGATG 8 cut(s) 279, 387, 492, 675, 805, 885, 1090, 1474
BseLI CCNNNNNNNGG 3 cut(s) 70, 919, 1783
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 618, 1170
BseNI ACTGG 1 cut(s) 1530
BseRI GAGGAG 2 cut(s) 206, 1408
BseSI GKGCMC 1 cut(s) 913
BseXI GCAGC 4 cut(s) 19, 41, 499, 1283
BseYI CCCAGC 2 cut(s) 244, 1148
BsgI GTGCAG 1 cut(s) 652
BshFI GGCC 3 cut(s) 755, 1166, 1638
BshTI ACCGGT 1 cut(s) 1767
BsiHKAI GWGCWC 2 cut(s) 131, 369
BsiSI CCGG 2 cut(s) 389, 1768
BslFI GGGAC 3 cut(s) 826, 1529, 1804
BslI CCNNNNNNNGG 3 cut(s) 70, 919, 1783
BsmAI GTCTC 2 cut(s) 53, 1390
BsmFI GGGAC 3 cut(s) 826, 1529, 1804
BsmI GAATGC 2 cut(s) 292, 643
BsnI GGCC 3 cut(s) 755, 1166, 1638
Bso31I GGTCTC 1 cut(s) 53
Bsp1286I GDGCHC 3 cut(s) 131, 369, 913
Bsp1407I TGTACA 1 cut(s) 1602
Bsp143I GATC 2 cut(s) 804, 1132
Bsp19I CCATGG 1 cut(s) 1243
BspACI CCGC 6 cut(s) 386, 559, 858, 920, 1063, 1229
BspANI GGCC 3 cut(s) 755, 1166, 1638
BspCNI CTCAG 2 cut(s) 619, 1171
BspHI TCATGA 2 cut(s) 463, 766
BspLI GGNNCC 1 cut(s) 1792
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 2 cut(s) 444, 1802
BspPI GGATC 1 cut(s) 1140
BspTNI GGTCTC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 1767
BsrGI TGTACA 1 cut(s) 1602
BsrI ACTGG 1 cut(s) 1530
BssAI RCCGGY 1 cut(s) 1767
BssECI CCNNGG 3 cut(s) 1243, 1306, 1307
BssMI GATC 2 cut(s) 804, 1132
BssT1I CCWWGG 1 cut(s) 1243
Bst2UI CCWGG 2 cut(s) 1308, 1413
Bst4CI ACNGT 5 cut(s) 108, 202, 567, 607, 715
Bst6I CTCTTC 3 cut(s) 1047, 1502, 1784
BstAPI GCANNNNNTGC 1 cut(s) 241
BstAUI TGTACA 1 cut(s) 1602
BstBAI YACGTR 2 cut(s) 779, 1318
BstC8I GCNNGC 3 cut(s) 559, 1042, 1227
BstDEI CTNAG 5 cut(s) 37, 627, 837, 1179, 1685
BstDSI CCRYGG 1 cut(s) 1243
BstEII GGTNACC 1 cut(s) 709
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 8 cut(s) 279, 387, 492, 675, 805, 885, 1090, 1474
BstKTI GATC 2 cut(s) 807, 1135
BstMAI GTCTC 2 cut(s) 53, 1390
BstMBI GATC 2 cut(s) 804, 1132
BstMWI GCNNNNNNNGC 8 cut(s) 29, 38, 170, 241, 917, 1100, 1226, 1268
BstNI CCWGG 2 cut(s) 1308, 1413
BstNSI RCATGY 3 cut(s) 226, 529, 1236
BstPI GGTNACC 1 cut(s) 709
BstSCI CCNGG 2 cut(s) 1306, 1411
BstSFI CTRYAG 2 cut(s) 122, 1292
BstSLI GKGCMC 1 cut(s) 913
BstSNI TACGTA 2 cut(s) 779, 1318
BstV1I GCAGC 4 cut(s) 19, 41, 499, 1283
BstX2I RGATCY 1 cut(s) 1132
BstYI RGATCY 1 cut(s) 1132
BsuRI GGCC 3 cut(s) 755, 1166, 1638
BtgI CCRYGG 1 cut(s) 1243
BtgZI GCGATG 1 cut(s) 833
BtrI CACGTC 1 cut(s) 1650
BtsCI GGATG 8 cut(s) 279, 387, 492, 675, 805, 885, 1090, 1474
BtsI GCAGTG 3 cut(s) 114, 988, 1280
BtsIMutI CAGTG 5 cut(s) 114, 198, 612, 988, 1280
BveI ACCTGC 2 cut(s) 444, 1802
Cac8I GCNNGC 3 cut(s) 559, 1042, 1227
CaiI CAGNNNCTG 1 cut(s) 32
CciI TCATGA 2 cut(s) 463, 766
Cfr10I RCCGGY 1 cut(s) 1767
Cfr13I GGNCC 2 cut(s) 439, 1791
CseI GACGC 1 cut(s) 260
Csp6I GTAC 1 cut(s) 1603
CspAI ACCGGT 1 cut(s) 1767
CviQI GTAC 1 cut(s) 1603
DdeI CTNAG 5 cut(s) 37, 627, 837, 1179, 1685
DpnI GATC 2 cut(s) 806, 1134
DpnII GATC 2 cut(s) 804, 1132
Eam1104I CTCTTC 3 cut(s) 1047, 1502, 1784
EarI CTCTTC 3 cut(s) 1047, 1502, 1784
Ecl136II GAGCTC 2 cut(s) 129, 367
Eco105I TACGTA 2 cut(s) 779, 1318
Eco130I CCWWGG 1 cut(s) 1243
Eco147I AGGCCT 1 cut(s) 1166
Eco24I GRGCYC 2 cut(s) 131, 369
Eco31I GGTCTC 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 439, 1791
Eco53kI GAGCTC 2 cut(s) 129, 367
Eco57I CTGAAG 4 cut(s) 9, 1071, 1526, 1765
Eco91I GGTNACC 1 cut(s) 709
EcoICRI GAGCTC 2 cut(s) 129, 367
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 1791
EcoO65I GGTNACC 1 cut(s) 709
EcoRI GAATTC 1 cut(s) 90
EcoRII CCWGG 2 cut(s) 1306, 1411
EcoT14I CCWWGG 1 cut(s) 1243
EcoT22I ATGCAT 1 cut(s) 750
EcoT38I GRGCYC 2 cut(s) 131, 369
ErhI CCWWGG 1 cut(s) 1243
FalI AAGNNNNNCTT 2 cut(s) 779, 811
FaqI GGGAC 3 cut(s) 826, 1529, 1804
FauI CCCGC 1 cut(s) 566
Fnu4HI GCNGC 7 cut(s) 30, 33, 386, 513, 921, 1230, 1272
FokI GGATG 8 cut(s) 286, 394, 499, 682, 812, 892, 1097, 1461
FriOI GRGCYC 2 cut(s) 131, 369
Fsp4HI GCNGC 7 cut(s) 30, 33, 386, 513, 921, 1230, 1272
FspBI CTAG 6 cut(s) 6, 132, 1139, 1253, 1259, 1275
GluI GCNGC 7 cut(s) 30, 33, 386, 513, 921, 1230, 1272
GsaI CCCAGC 2 cut(s) 248, 1152
GsuI CTGGAG 1 cut(s) 1547
HaeIII GGCC 3 cut(s) 755, 1166, 1638
HapII CCGG 2 cut(s) 389, 1768
HgaI GACGC 1 cut(s) 260
HinfI GANTC 8 cut(s) 9, 183, 647, 854, 1239, 1249, 1516, 1681
HpaII CCGG 2 cut(s) 389, 1768
HphI GGTGA 5 cut(s) 260, 344, 721, 1709, 1766
Hpy166II GTNNAC 3 cut(s) 523, 1280, 1605
Hpy188I TCNGA 5 cut(s) 477, 496, 1084, 1383, 1486
Hpy188III TCNNGA 7 cut(s) 132, 464, 692, 767, 956, 967, 1253
Hpy8I GTNNAC 3 cut(s) 523, 1280, 1605
HpyAV CCTTC 3 cut(s) 319, 674, 1781
HpyCH4III ACNGT 5 cut(s) 108, 202, 567, 607, 715
HpyCH4IV ACGT 3 cut(s) 778, 1317, 1649
HpyF10VI GCNNNNNNNGC 8 cut(s) 29, 38, 170, 241, 917, 1100, 1226, 1268
HpyF3I CTNAG 5 cut(s) 37, 627, 837, 1179, 1685
HpySE526I ACGT 3 cut(s) 778, 1317, 1649
Kzo9I GATC 2 cut(s) 804, 1132
LmnI GCTCC 2 cut(s) 219, 364
Lsp1109I GCAGC 4 cut(s) 19, 41, 499, 1283
LweI GCATC 5 cut(s) 372, 477, 544, 870, 1750
MaeI CTAG 6 cut(s) 6, 132, 1139, 1253, 1259, 1275
MaeII ACGT 3 cut(s) 778, 1317, 1649
MaeIII GTNAC 8 cut(s) 248, 595, 700, 709, 990, 1003, 1517, 1697
MalI GATC 2 cut(s) 806, 1134
MboI GATC 2 cut(s) 804, 1132
MboII GAAGA 6 cut(s) 133, 1064, 1127, 1381, 1519, 1771
MfeI CAATTG 1 cut(s) 1626
MflI RGATCY 1 cut(s) 1132
MhlI GDGCHC 3 cut(s) 131, 369, 913
MlyI GAGTC 3 cut(s) 656, 1248, 1525
MmeI TCCRAC 1 cut(s) 1062
Mph1103I ATGCAT 1 cut(s) 750
MseI TTAA 3 cut(s) 720, 1110, 1587
MslI CAYNNNNRTG 1 cut(s) 939
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 389, 1768
MspR9I CCNGG 2 cut(s) 1308, 1413
MunI CAATTG 1 cut(s) 1626
Mva1269I GAATGC 2 cut(s) 292, 643
MvaI CCWGG 2 cut(s) 1308, 1413
MwoI GCNNNNNNNGC 8 cut(s) 29, 38, 170, 241, 917, 1100, 1226, 1268
NcoI CCATGG 1 cut(s) 1243
NdeII GATC 2 cut(s) 804, 1132
NlaIV GGNNCC 1 cut(s) 1792
NmuCI GTSAC 4 cut(s) 248, 709, 1517, 1697
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 3 cut(s) 226, 529, 1236
OliI CACNNNNGTG 1 cut(s) 939
PagI TCATGA 2 cut(s) 463, 766
PasI CCCWGGG 1 cut(s) 1307
PceI AGGCCT 1 cut(s) 1166
PciI ACATGT 2 cut(s) 222, 525
PctI GAATGC 2 cut(s) 292, 643
PfeI GAWTC 5 cut(s) 9, 183, 854, 1249, 1681
PinAI ACCGGT 1 cut(s) 1767
PkrI GCNGC 7 cut(s) 31, 34, 387, 514, 922, 1231, 1273
PleI GAGTC 3 cut(s) 655, 1247, 1524
PpsI GAGTC 3 cut(s) 655, 1247, 1524
Ppu21I YACGTR 2 cut(s) 779, 1318
PpuMI RGGWCCY 1 cut(s) 1791
PscI ACATGT 2 cut(s) 222, 525
Psp124BI GAGCTC 2 cut(s) 131, 369
Psp5II RGGWCCY 1 cut(s) 1791
Psp6I CCWGG 2 cut(s) 1306, 1411
PspEI GGTNACC 1 cut(s) 709
PspFI CCCAGC 2 cut(s) 244, 1148
PspGI CCWGG 2 cut(s) 1306, 1411
PspN4I GGNNCC 1 cut(s) 1792
PspPI GGNCC 2 cut(s) 439, 1791
PspPPI RGGWCCY 1 cut(s) 1791
PstI CTGCAG 1 cut(s) 126
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 1132
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 1604
RsaNI GTAC 1 cut(s) 1603
RseI CAYNNNNRTG 1 cut(s) 939
SacI GAGCTC 2 cut(s) 131, 369
SaqAI TTAA 3 cut(s) 720, 1110, 1587
SatI GCNGC 7 cut(s) 30, 33, 386, 513, 921, 1230, 1272
Sau3AI GATC 2 cut(s) 804, 1132
Sau96I GGNCC 2 cut(s) 439, 1791
SchI GAGTC 3 cut(s) 656, 1248, 1525
ScrFI CCNGG 2 cut(s) 1308, 1413
SduI GDGCHC 3 cut(s) 131, 369, 913
SfaNI GCATC 5 cut(s) 372, 477, 544, 870, 1750
SfcI CTRYAG 2 cut(s) 122, 1292
SinI GGWCC 2 cut(s) 439, 1791
SmiMI CAYNNNNRTG 1 cut(s) 939
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
SnaBI TACGTA 2 cut(s) 779, 1318
SseBI AGGCCT 1 cut(s) 1166
SsiI CCGC 6 cut(s) 386, 559, 858, 920, 1063, 1229
SspI AATATT 1 cut(s) 1333
SspMI CTAG 6 cut(s) 6, 132, 1139, 1253, 1259, 1275
SstI GAGCTC 2 cut(s) 131, 369
StuI AGGCCT 1 cut(s) 1166
StyD4I CCNGG 2 cut(s) 1306, 1411
StyI CCWWGG 1 cut(s) 1243
TaaI ACNGT 5 cut(s) 108, 202, 567, 607, 715
TaiI ACGT 3 cut(s) 781, 1320, 1652
TaqI TCGA 4 cut(s) 88, 373, 873, 966
TatI WGTACW 1 cut(s) 1602
TauI GCSGC 3 cut(s) 388, 923, 1232
TfiI GAWTC 5 cut(s) 9, 183, 854, 1249, 1681
Tru1I TTAA 3 cut(s) 720, 1110, 1587
Tru9I TTAA 3 cut(s) 720, 1110, 1587
TscAI CASTG 5 cut(s) 121, 205, 612, 988, 1287
TseFI GTSAC 4 cut(s) 248, 709, 1517, 1697
TseI GCWGC 4 cut(s) 29, 32, 512, 1271
Tsp45I GTSAC 4 cut(s) 248, 709, 1517, 1697
TspDTI ATGAA 5 cut(s) 100, 452, 693, 755, 1101
TspGWI ACGGA 1 cut(s) 1745
TspRI CASTG 5 cut(s) 121, 205, 612, 988, 1287
VpaK11BI GGWCC 2 cut(s) 439, 1791
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 4 cut(s) 90, 867, 1407, 1555
XbaI TCTAGA 2 cut(s) 131, 1252
XceI RCATGY 3 cut(s) 226, 529, 1236
XspI CTAG 6 cut(s) 6, 132, 1139, 1253, 1259, 1275
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.