Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000112.1

Orthogroup ID

OG0018882

Physical Location & Seq

Genomic Coordinates Forward (+)

118650 .. 119285

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgcaggaagaaaatgggggagagccacgacaacctccaccacagcgcaatgacgtcgtcctccgctgcttctcgattgggtttgggtataaggactgcttcttcctccatcgccagcgaaatcgtggaggctcgaggccacattctaagggccaccgaccggaaggaccgccacaacaaggtctacacggccaaaggccccagggaccaccacgtccagctcgccgcccaaccgctattcaattctacgacttgcaagaccggctcggatacgaccggcccaacaaggttgtcgattgggtcatcaagaaagccaaggccgcaatcgacgagctgccgccgtggaacccgaactcaatttttgttcagaaaacatcttctccgacggtgccgatatccaccgcgcaggacacgcagaacgcgagcctccatttctcgatggtggaggctccgagttctttgtctgctaatcggcgaggcgcaatggtgggtggcagcggagtggcggagctggtgaatcagaacagctcgaattttctgcaagtaaggatggtgtggaggctgaagttgttaatctttggctacctacaattgcttcttatcgaagtttggctagaggccaaagttgtctgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040034 GO:0042221 GO:0045962 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

211

Amino Acids

23.72

Weight (kDa)

9.95

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	78 - 134	7.2e-12	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018882)

Species	Orthologous Gene IDs
malus_domestica	MD06G1235000.v1.1 MD06G1235200.v1.1
rosa_multiflora	Rmu_co8090820.1_g000001 Rmu_sc0000016.1_g000004 Rmu_sc0000112.1_g000027 Rmu_sc0009988.1_g000017 Rmu_sc0019843.1_g000001 Rmu_sc0040871.1_g000001 Rmu_ssc0000126.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	213
AatII	GACGTC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	388
AccI	GTMKAC	1 cut(s)	184
AccII	CGCG	2 cut(s)	404, 422
AciI	CCGC	9 cut(s)	64, 170, 226, 234, 321, 338, 402, 498, 506
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	584
AcyI	GRCGYC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	160, 179
AgsI	TTSAA	1 cut(s)	242
AjiI	CACGTC	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	4 cut(s)	221, 334, 511, 528
AluI	AGCT	4 cut(s)	221, 334, 511, 528
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	7 cut(s)	137, 151, 190, 197, 278, 318, 618
ApeKI	GCWGC	3 cut(s)	66, 334, 495
ApoI	RAATTY	1 cut(s)	532
AspLEI	GCGC	3 cut(s)	48, 406, 482
AspS9I	GGNCC	5 cut(s)	151, 167, 198, 206, 279
AsuHPI	GGTGA	1 cut(s)	526
AvaI	CYCGRG	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	167, 206
BanI	GGYRCC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	53, 321, 507
BccI	CCATC	3 cut(s)	117, 433, 544
BceAI	ACGGC	2 cut(s)	205, 325
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 520, 554
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	263
BfaI	CTAG	2 cut(s)	614, 634
BfuI	GTATCC	1 cut(s)	263
BisI	GCNGC	6 cut(s)	67, 226, 321, 335, 338, 496
BlsI	GCNGC	6 cut(s)	68, 227, 322, 336, 339, 497
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	2 cut(s)	167, 206
BmeT110I	CYCGRG	1 cut(s)	133
BmgBI	CACGTC	1 cut(s)	215
BmgT120I	GGNCC	5 cut(s)	151, 167, 198, 206, 279
BmiI	GGNNCC	5 cut(s)	200, 207, 347, 390, 450
BmrFI	CCNGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	4 cut(s)	201, 202, 315, 341
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 179
Bse118I	RCCGGY	2 cut(s)	261, 276
Bse3DI	GCAATG	2 cut(s)	55, 489
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	4 cut(s)	201, 202, 315, 341
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	2 cut(s)	160, 179
BseMI	GCAATG	2 cut(s)	55, 489
BseXI	GCAGC	3 cut(s)	53, 321, 507
Bsh1236I	CGCG	2 cut(s)	404, 422
Bsh1285I	CGRYCG	2 cut(s)	161, 277
BshFI	GGCC	7 cut(s)	139, 153, 192, 199, 280, 320, 620
BshNI	GGYRCC	1 cut(s)	388
BsiEI	CGRYCG	2 cut(s)	161, 277
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	3 cut(s)	161, 262, 277
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	160, 179
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	7 cut(s)	139, 153, 192, 199, 280, 320, 620
BsoBI	CYCGRG	1 cut(s)	133
BspACI	CCGC	9 cut(s)	64, 170, 226, 234, 321, 338, 402, 498, 506
BspANI	GGCC	7 cut(s)	139, 153, 192, 199, 280, 320, 620
BspFNI	CGCG	2 cut(s)	404, 422
BspLI	GGNNCC	5 cut(s)	200, 207, 347, 390, 450
BspT107I	GGYRCC	1 cut(s)	388
BsrDI	GCAATG	2 cut(s)	55, 489
BsrFI	RCCGGY	2 cut(s)	261, 276
BssAI	RCCGGY	2 cut(s)	261, 276
BssECI	CCNNGG	4 cut(s)	201, 202, 315, 341
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	388
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	3 cut(s)	116, 223, 424
BstDEI	CTNAG	1 cut(s)	147
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	555
BstFNI	CGCG	2 cut(s)	404, 422
BstHHI	GCGC	3 cut(s)	48, 406, 482
BstMCI	CGRYCG	2 cut(s)	161, 277
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 320, 412
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	2 cut(s)	404, 422
BstV1I	GCAGC	3 cut(s)	53, 321, 507
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	7 cut(s)	139, 153, 192, 199, 280, 320, 620
BtgI	CCRYGG	1 cut(s)	341
BtgZI	GCGATG	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	555
Cac8I	GCNNGC	3 cut(s)	116, 223, 424
CfoI	GCGC	3 cut(s)	48, 406, 482
Cfr10I	RCCGGY	2 cut(s)	261, 276
Cfr13I	GGNCC	5 cut(s)	151, 167, 198, 206, 279
DdeI	CTNAG	1 cut(s)	147
DrdI	GACNNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	521
Eco130I	CCWWGG	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	167, 206
Eco57I	CTGAAG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	201
EcoRV	GATATC	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaiI	YATR	1 cut(s)	90
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FaqI	GGGAC	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	184
Fnu4HI	GCNGC	6 cut(s)	67, 226, 321, 335, 338, 496
FokI	GGATG	1 cut(s)	562
Fsp4HI	GCNGC	6 cut(s)	67, 226, 321, 335, 338, 496
FspBI	CTAG	2 cut(s)	614, 634
GlaI	GCGC	3 cut(s)	47, 405, 481
GluI	GCNGC	6 cut(s)	67, 226, 321, 335, 338, 496
HaeIII	GGCC	7 cut(s)	139, 153, 192, 199, 280, 320, 620
HapII	CCGG	3 cut(s)	161, 262, 277
HhaI	GCGC	3 cut(s)	48, 406, 482
Hin1I	GRCGYC	1 cut(s)	54
Hin6I	GCGC	3 cut(s)	46, 404, 480
HinP1I	GCGC	3 cut(s)	46, 404, 480
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	3 cut(s)	161, 262, 277
HphI	GGTGA	1 cut(s)	526
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	5 cut(s)	269, 369, 384, 453, 522
Hpy188III	TCNNGA	3 cut(s)	73, 307, 436
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	3 cut(s)	59, 332, 388
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	54, 214
HpyCH4V	TGCA	3 cut(s)	4, 256, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 320, 412
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	2 cut(s)	54, 214
Hsp92I	GRCGYC	1 cut(s)	54
HspAI	GCGC	3 cut(s)	46, 404, 480
LmnI	GCTCC	2 cut(s)	454, 508
LpnPI	CCDG	9 cut(s)	128, 174, 188, 215, 231, 275, 290, 392, 497
Lsp1109I	GCAGC	3 cut(s)	53, 321, 507
MaeI	CTAG	2 cut(s)	614, 634
MaeII	ACGT	2 cut(s)	54, 214
MboII	GAAGA	3 cut(s)	20, 94, 369
MfeI	CAATTG	1 cut(s)	590
MluCI	AATT	4 cut(s)	242, 357, 532, 590
MmeI	TCCRAC	1 cut(s)	407
MseI	TTAA	1 cut(s)	572
MspA1I	CMGCKG	2 cut(s)	66, 498
MspI	CCGG	3 cut(s)	161, 262, 277
MspR9I	CCNGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	590
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	2 cut(s)	404, 422
MwoI	GCNNNNNNNGC	3 cut(s)	262, 320, 412
NlaIV	GGNNCC	5 cut(s)	200, 207, 347, 390, 450
PaeR7I	CTCGAG	1 cut(s)	133
PasI	CCCWGGG	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	517
PflFI	GACNNNGTC	1 cut(s)	56
PkrI	GCNGC	6 cut(s)	68, 227, 322, 336, 339, 497
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	5 cut(s)	200, 207, 347, 390, 450
PspPI	GGNCC	5 cut(s)	151, 167, 198, 206, 279
PspXI	VCTCGAGB	1 cut(s)	133
PsyI	GACNNNGTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	6 cut(s)	67, 226, 321, 335, 338, 496
Sau96I	GGNCC	5 cut(s)	151, 167, 198, 206, 279
ScrFI	CCNGG	1 cut(s)	203
Sfr274I	CTCGAG	1 cut(s)	133
SinI	GGWCC	2 cut(s)	167, 206
SlaI	CTCGAG	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
Sse9I	AATT	4 cut(s)	242, 357, 532, 590
SsiI	CCGC	9 cut(s)	64, 170, 226, 234, 321, 338, 402, 498, 506
SspMI	CTAG	2 cut(s)	614, 634
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	57, 217
TaqI	TCGA	7 cut(s)	74, 134, 294, 327, 437, 530, 603
TasI	AATT	4 cut(s)	242, 357, 532, 590
TauI	GCSGC	3 cut(s)	228, 323, 340
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TseI	GCWGC	3 cut(s)	66, 334, 495
Tth111I	GACNNNGTC	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	167, 206
XapI	RAATTY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	184
XspI	CTAG	2 cut(s)	614, 634
ZraI	GACGTC	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.