Rmu_sc0000146.1_g000035

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000146.1
Physical Location & Seq
Reverse (-)
121707 .. 125136
3430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000146.1_g000035.1.cds

Sequence Viewer

Length: 2067 bp
atggtggagctgcagtcttgtgctagattggtcaaggcttctgcattatgcgcgatagaggaaggtatgaaaggagacggtgtcgatgttattgcagagatttcagctgaattagaaagggaaagacagaagaatgcagaacttatgcacagaatactaattcttgaagctcggatacaggaaaaagagaatgaacctcctcgaacaaatggacagggcagttgctcaaattcaatggaaagaaacttgaagaagttcaagagacagaagattgaactcactagtaacacaactgaggatggtagtataactgttgtccaagctgaaattgctgcacagaagaagcatcatattgaatcctatgcccttgaagatccaattgtagatgaccgtctagtcaactggatgagcatggaggaaacacaggttttgctttctgaaaaagctaaggatggtgattcaactgcagattgtgatgaaactgatgacagtgatgatgaagatgaagattatcgcgaagaagatggcattaacaatgaccataaagaagctgatggaacttcaagacttattgatgaactgatttatgaagttgctgataagggttcagatgcagggtgtgcagaaattttctcaggtgcagttcagccactatttcaaaatgtgaaccgagaaaccaatgaagaactaccaatagcgccaatttgtaaggagatggaaattagaaaccaaaacaagacagaacctaaggattttggaagtttcaaggtaccaactagtatcccaacttcgaagaaggagtttattcatacaggatctgggagcctatcacaacataaaaagcctccaaagttggcattttgcccaaaagaagtgaagagaataattgattcagaatcccttcttcagaaaaatgctcattcacacacaataaggaagatcatagtttttgcatctcttggtataaggcatggttgtgaagatatatatgaattagacttcaaccattttaatattttaaggaagggcgatcaatatatatctccaacagatcctggggagcatgttctgtatgaaaatcctggtgttcggaggaaggtattctatccaaaccgaaagaaccctacactatgtccagttcaaatacttgaggaagagaaggctatgcgtccatcagatcctagctgcccatcatgcttatttctatgcatcaagtatggtggaaggacaagaaaccttccccaaaatgaatatgtcagacagcgcatgggaagaaacaagctaaagtcttttgggccattgatgtgtcgaatggcaatgctagctcatgttcgcagtgggagcttctttttcaaagccttgggaatcacacttcttttcatggctggttttcctgatgacctggttcaaagggaaaccaaatatcggaacttagacttgctccagaaatattacagaacagatgaggatgctgaaggagaggagttatttcttgcatatcctatgatagatgatgatactcaggctagtccaggttctcagcagttttgtggcaagacttcttcgacaaaaacaaagggaaagaaacaaactcactctaatagtaagcctcataatatgcagaagacttcattcccaaaaggtacattttcaagctctgcacctcaatttggactcatgaatcaaacctgtattcccccattagctgctccaccaatctcaaacactgtgatcaccaatgctggtactaatatcccctatcataatccaaatccgtatcacctttttcctccacaaccatcaaacactttcatgcctatggtatattggcctcccccaaacacattttctcctggactaccttatcaatctacacatggttaccggtcttacccttctgccggaaattacttcgtccatccgcagccttattacagccatccatcctgcggtccattgatctccaaaacgatagaagtagcaaagaaaaatggcatggcctcggaggaagctgctgatagtgattatgattgtagttcaagcagtatagagccaaagaagaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

688

Amino Acids

77.28

Weight (kDa)

5.83

Isoelectric Point (pI)

48.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
Acc65I GGTACC 1 cut(s) 769
AccB1I GGYRCC 1 cut(s) 769
AccII CGCG 2 cut(s) 53, 516
AciI CCGC 2 cut(s) 1922, 1950
AclWI GGATC 4 cut(s) 368, 823, 1046, 1172
AcsI RAATTY 2 cut(s) 229, 627
AcuI CTGAAG 2 cut(s) 890, 1494
AfaI GTAC 3 cut(s) 771, 1645, 1747
AfiI CCNNNNNNNGG 4 cut(s) 1425, 1670, 1901, 1949
AgeI ACCGGT 1 cut(s) 1884
AhlI ACTAGT 2 cut(s) 281, 776
AjnI CCWGG 5 cut(s) 1054, 1081, 1401, 1531, 1852
AjuI GAANNNNNNNTTGG 2 cut(s) 1831, 1863
Alw26I GTCTC 2 cut(s) 69, 256
AlwI GGATC 4 cut(s) 368, 823, 1046, 1172
AlwNI CAGNNNCTG 2 cut(s) 818, 1055
AoxI GGCC 3 cut(s) 1295, 1829, 1998
ApeKI GCWGC 6 cut(s) 10, 332, 1185, 1706, 1924, 2012
ApoI RAATTY 2 cut(s) 229, 627
AsiGI ACCGGT 1 cut(s) 1884
Asp700I GAANNNNTTC 3 cut(s) 254, 900, 1100
Asp718I GGTACC 1 cut(s) 769
AspLEI GCGC 3 cut(s) 53, 700, 1266
AspS9I GGNCC 2 cut(s) 1295, 1952
AsuHPI GGTGA 3 cut(s) 467, 1726, 1772
AsuII TTCGAA 1 cut(s) 791
AsuNHI GCTAGC 1 cut(s) 1321
AvaII GGWCC 1 cut(s) 1952
AxyI CCTNAGG 1 cut(s) 747
BanI GGYRCC 1 cut(s) 769
BarI GAAGNNNNNNTAC 4 cut(s) 159, 191, 772, 804
BbsI GAAGAC 1 cut(s) 1631
BbvI GCAGC 5 cut(s) 319, 1172, 1693, 1936, 1999
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 5 cut(s) 1056, 1083, 1403, 1533, 1854
BciVI GTATCC 2 cut(s) 168, 791
BclI TGATCA 1 cut(s) 1731
BcoDI GTCTC 2 cut(s) 69, 256
BcuI ACTAGT 2 cut(s) 281, 776
BfaI CTAG 8 cut(s) 24, 282, 395, 777, 1182, 1322, 1527, 2065
BfmI CTRYAG 2 cut(s) 11, 465
BfoI RGCGCY 1 cut(s) 701
BfuI GTATCC 2 cut(s) 168, 791
BisI GCNGC 6 cut(s) 11, 333, 1186, 1707, 1925, 2013
BlsI GCNGC 6 cut(s) 12, 334, 1187, 1708, 1926, 2014
Bme1390I CCNGG 5 cut(s) 1056, 1083, 1403, 1533, 1854
Bme18I GGWCC 1 cut(s) 1952
BmgT120I GGNCC 2 cut(s) 1295, 1952
BmiI GGNNCC 2 cut(s) 771, 824
BmrFI CCNGG 5 cut(s) 1056, 1083, 1403, 1533, 1854
BmsI GCATC 5 cut(s) 355, 601, 962, 1218, 1459
BmtI GCTAGC 1 cut(s) 1325
BpiI GAAGAC 1 cut(s) 1631
BpmI CTGGAG 1 cut(s) 1427
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 791
BpuEI CTTGAG 1 cut(s) 1169
BsaJI CCNNGG 3 cut(s) 1055, 1359, 2001
BsaWI WCCGGW 1 cut(s) 1884
BsaXI ACNNNNNCTCC 5 cut(s) 29, 66, 96, 1834, 1864
Bsc4I CCNNNNNNNGG 4 cut(s) 1425, 1670, 1901, 1949
Bse118I RCCGGY 1 cut(s) 1884
Bse1I ACTGG 2 cut(s) 407, 1136
Bse21I CCTNAGG 1 cut(s) 747
Bse3DI GCAATG 1 cut(s) 1323
BseBI CCWGG 5 cut(s) 1056, 1083, 1403, 1533, 1854
BseDI CCNNGG 3 cut(s) 1055, 1359, 2001
BseGI GGATG 7 cut(s) 304, 411, 457, 1474, 1918, 1939, 1943
BseLI CCNNNNNNNGG 4 cut(s) 1425, 1670, 1901, 1949
BseMI GCAATG 1 cut(s) 1323
BseMII CTCAG 4 cut(s) 285, 648, 1535, 1553
BseNI ACTGG 2 cut(s) 407, 1136
BseRI GAGGAG 2 cut(s) 189, 1496
BseXI GCAGC 5 cut(s) 319, 1172, 1693, 1936, 1999
BsgI GTGCAG 4 cut(s) 318, 642, 660, 1644
Bsh1236I CGCG 2 cut(s) 53, 516
BshFI GGCC 3 cut(s) 1297, 1831, 2000
BshNI GGYRCC 1 cut(s) 769
BshTI ACCGGT 1 cut(s) 1884
BsiSI CCGG 2 cut(s) 1885, 1902
BslI CCNNNNNNNGG 4 cut(s) 1425, 1670, 1901, 1949
BsmAI GTCTC 2 cut(s) 69, 256
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 3 cut(s) 1297, 1831, 2000
Bsp119I TTCGAA 1 cut(s) 791
Bsp143I GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1731, 1959
Bsp68I TCGCGA 1 cut(s) 516
BspACI CCGC 2 cut(s) 1922, 1950
BspANI GGCC 3 cut(s) 1297, 1831, 2000
BspCNI CTCAG 4 cut(s) 286, 647, 1534, 1552
BspFNI CGCG 2 cut(s) 53, 516
BspHI TCATGA 1 cut(s) 1677
BspLI GGNNCC 2 cut(s) 771, 824
BspMAI CTGCAG 2 cut(s) 15, 469
BspOI GCTAGC 1 cut(s) 1325
BspPI GGATC 4 cut(s) 368, 823, 1046, 1172
BspT104I TTCGAA 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 769
BsrDI GCAATG 1 cut(s) 1323
BsrFI RCCGGY 1 cut(s) 1884
BsrI ACTGG 2 cut(s) 407, 1136
BssAI RCCGGY 1 cut(s) 1884
BssECI CCNNGG 3 cut(s) 1055, 1359, 2001
BssMI GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1731, 1959
BssT1I CCWWGG 1 cut(s) 1359
Bst2UI CCWGG 5 cut(s) 1056, 1083, 1403, 1533, 1854
Bst4CI ACNGT 5 cut(s) 80, 313, 392, 491, 1729
Bst6I CTCTTC 2 cut(s) 872, 1149
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 791
BstC8I GCNNGC 1 cut(s) 1323
BstDEI CTNAG 7 cut(s) 294, 447, 634, 747, 1432, 1521, 1539
BstEII GGTNACC 1 cut(s) 1880
BstF5I GGATG 7 cut(s) 304, 411, 457, 1474, 1918, 1939, 1943
BstFNI CGCG 2 cut(s) 53, 516
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 3 cut(s) 53, 700, 1266
BstKTI GATC 8 cut(s) 376, 818, 942, 1033, 1054, 1180, 1734, 1962
BstMAI GTCTC 2 cut(s) 69, 256
BstMBI GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1731, 1959
BstMWI GCNNNNNNNGC 6 cut(s) 50, 329, 620, 1194, 1322, 1341
BstNI CCWGG 5 cut(s) 1056, 1083, 1403, 1533, 1854
BstNSI RCATGY 1 cut(s) 1067
BstPI GGTNACC 1 cut(s) 1880
BstSCI CCNGG 5 cut(s) 1054, 1081, 1401, 1531, 1852
BstSFI CTRYAG 2 cut(s) 11, 465
BstUI CGCG 2 cut(s) 53, 516
BstV1I GCAGC 5 cut(s) 319, 1172, 1693, 1936, 1999
BstV2I GAAGAC 1 cut(s) 1631
BstX2I RGATCY 4 cut(s) 373, 815, 1051, 1177
BstYI RGATCY 4 cut(s) 373, 815, 1051, 1177
Bsu36I CCTNAGG 1 cut(s) 747
BsuI GTATCC 2 cut(s) 168, 791
BsuRI GGCC 3 cut(s) 1297, 1831, 2000
BtsCI GGATG 7 cut(s) 304, 411, 457, 1474, 1918, 1939, 1943
BtsI GCAGTG 1 cut(s) 1342
BtsIMutI CAGTG 3 cut(s) 496, 1342, 1725
BtuMI TCGCGA 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 1323
CaiI CAGNNNCTG 2 cut(s) 818, 1055
CciI TCATGA 1 cut(s) 1677
CfoI GCGC 3 cut(s) 53, 700, 1266
Cfr10I RCCGGY 1 cut(s) 1884
Cfr13I GGNCC 2 cut(s) 1295, 1952
CseI GACGC 1 cut(s) 1157
CsiI ACCWGGT 1 cut(s) 1401
Csp6I GTAC 3 cut(s) 770, 1644, 1746
CspAI ACCGGT 1 cut(s) 1884
CspCI CAANNNNNGTGG 2 cut(s) 1201, 1236
CviQI GTAC 3 cut(s) 770, 1644, 1746
DdeI CTNAG 7 cut(s) 294, 447, 634, 747, 1432, 1521, 1539
DpnI GATC 8 cut(s) 375, 817, 941, 1032, 1053, 1179, 1733, 1961
DpnII GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1731, 1959
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
Eam1104I CTCTTC 2 cut(s) 872, 1149
EarI CTCTTC 2 cut(s) 872, 1149
Eco130I CCWWGG 1 cut(s) 1359
Eco47I GGWCC 1 cut(s) 1952
Eco57I CTGAAG 2 cut(s) 890, 1494
Eco81I CCTNAGG 1 cut(s) 747
Eco91I GGTNACC 1 cut(s) 1880
EcoO65I GGTNACC 1 cut(s) 1880
EcoRII CCWGG 5 cut(s) 1054, 1081, 1401, 1531, 1852
EcoT14I CCWWGG 1 cut(s) 1359
EcoT22I ATGCAT 1 cut(s) 1211
ErhI CCWWGG 1 cut(s) 1359
Esp3I CGTCTC 1 cut(s) 69
FbaI TGATCA 1 cut(s) 1731
Fnu4HI GCNGC 6 cut(s) 11, 333, 1186, 1707, 1925, 2013
FokI GGATG 7 cut(s) 311, 418, 464, 1481, 1905, 1926, 1930
Fsp4HI GCNGC 6 cut(s) 11, 333, 1186, 1707, 1925, 2013
FspBI CTAG 8 cut(s) 24, 282, 395, 777, 1182, 1322, 1527, 2065
GlaI GCGC 3 cut(s) 52, 699, 1265
GluI GCNGC 6 cut(s) 11, 333, 1186, 1707, 1925, 2013
GsuI CTGGAG 1 cut(s) 1427
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 3 cut(s) 1297, 1831, 2000
HapII CCGG 2 cut(s) 1885, 1902
HgaI GACGC 1 cut(s) 1157
HhaI GCGC 3 cut(s) 53, 700, 1266
Hin6I GCGC 3 cut(s) 51, 698, 1264
HinP1I GCGC 3 cut(s) 51, 698, 1264
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 7 cut(s) 356, 458, 890, 896, 1365, 1674, 1681
HpaII CCGG 2 cut(s) 1885, 1902
HphI GGTGA 3 cut(s) 467, 1726, 1772
Hpy166II GTNNAC 2 cut(s) 400, 667
Hpy188III TCNNGA 7 cut(s) 164, 259, 515, 564, 1394, 1444, 1678
Hpy8I GTNNAC 2 cut(s) 400, 667
HpyCH4III ACNGT 5 cut(s) 80, 313, 392, 491, 1729
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 329, 620, 1194, 1322, 1341
HpyF3I CTNAG 7 cut(s) 294, 447, 634, 747, 1432, 1521, 1539
HspAI GCGC 3 cut(s) 51, 698, 1264
KpnI GGTACC 1 cut(s) 773
Ksp22I TGATCA 1 cut(s) 1731
Kzo9I GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1731, 1959
LmnI GCTCC 6 cut(s) 7, 822, 1060, 1341, 1446, 1714
Lsp1109I GCAGC 5 cut(s) 319, 1172, 1693, 1936, 1999
LweI GCATC 5 cut(s) 355, 601, 962, 1218, 1459
MabI ACCWGGT 1 cut(s) 1401
MaeI CTAG 8 cut(s) 24, 282, 395, 777, 1182, 1322, 1527, 2065
MaeIII GTNAC 2 cut(s) 284, 1880
MalI GATC 8 cut(s) 375, 817, 941, 1032, 1053, 1179, 1733, 1961
MboI GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1731, 1959
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 4 cut(s) 373, 815, 1051, 1177
MlyI GAGTC 1 cut(s) 1668
MmeI TCCRAC 1 cut(s) 1070
Mph1103I ATGCAT 1 cut(s) 1211
MroXI GAANNNNTTC 3 cut(s) 254, 900, 1100
MseI TTAA 3 cut(s) 531, 1011, 1019
MslI CAYNNNNRTG 4 cut(s) 975, 1303, 1811, 1817
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 2 cut(s) 1885, 1902
MspR9I CCNGG 5 cut(s) 1056, 1083, 1403, 1533, 1854
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 5 cut(s) 1056, 1083, 1403, 1533, 1854
MvnI CGCG 2 cut(s) 53, 516
MwoI GCNNNNNNNGC 6 cut(s) 50, 329, 620, 1194, 1322, 1341
NdeII GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1731, 1959
NheI GCTAGC 1 cut(s) 1321
NlaIV GGNNCC 2 cut(s) 771, 824
NruI TCGCGA 1 cut(s) 516
NsiI ATGCAT 1 cut(s) 1211
NspI RCATGY 1 cut(s) 1067
NspV TTCGAA 1 cut(s) 791
PagI TCATGA 1 cut(s) 1677
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 3 cut(s) 254, 900, 1100
PfeI GAWTC 6 cut(s) 356, 458, 890, 896, 1365, 1681
PflFI GACNNNGTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 1852
PinAI ACCGGT 1 cut(s) 1884
PkrI GCNGC 6 cut(s) 12, 334, 1187, 1708, 1926, 2014
PleI GAGTC 1 cut(s) 1668
PpsI GAGTC 1 cut(s) 1668
Psp6I CCWGG 5 cut(s) 1054, 1081, 1401, 1531, 1852
PspEI GGTNACC 1 cut(s) 1880
PspGI CCWGG 5 cut(s) 1054, 1081, 1401, 1531, 1852
PspN4I GGNNCC 2 cut(s) 771, 824
PspPI GGNCC 2 cut(s) 1295, 1952
PstI CTGCAG 2 cut(s) 15, 469
PstNI CAGNNNCTG 2 cut(s) 818, 1055
PsuI RGATCY 4 cut(s) 373, 815, 1051, 1177
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 107
RruI TCGCGA 1 cut(s) 516
RsaI GTAC 3 cut(s) 771, 1645, 1747
RsaNI GTAC 3 cut(s) 770, 1644, 1746
RseI CAYNNNNRTG 4 cut(s) 975, 1303, 1811, 1817
SaqAI TTAA 3 cut(s) 531, 1011, 1019
SatI GCNGC 6 cut(s) 11, 333, 1186, 1707, 1925, 2013
Sau3AI GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1731, 1959
Sau96I GGNCC 2 cut(s) 1295, 1952
SchI GAGTC 1 cut(s) 1668
ScrFI CCNGG 5 cut(s) 1056, 1083, 1403, 1533, 1854
SexAI ACCWGGT 1 cut(s) 1401
SfaNI GCATC 5 cut(s) 355, 601, 962, 1218, 1459
SfcI CTRYAG 2 cut(s) 11, 465
SfuI TTCGAA 1 cut(s) 791
SinI GGWCC 1 cut(s) 1952
SmiMI CAYNNNNRTG 4 cut(s) 975, 1303, 1811, 1817
SmlI CTYRAG 1 cut(s) 1148
SmoI CTYRAG 1 cut(s) 1148
SpeI ACTAGT 2 cut(s) 281, 776
SsiI CCGC 2 cut(s) 1922, 1950
SspI AATATT 2 cut(s) 1015, 1451
SspMI CTAG 8 cut(s) 24, 282, 395, 777, 1182, 1322, 1527, 2065
StyD4I CCNGG 5 cut(s) 1054, 1081, 1401, 1531, 1852
StyI CCWWGG 1 cut(s) 1359
TaaI ACNGT 5 cut(s) 80, 313, 392, 491, 1729
TaqI TCGA 5 cut(s) 84, 202, 791, 1309, 1565
TfiI GAWTC 6 cut(s) 356, 458, 890, 896, 1365, 1681
Tru1I TTAA 3 cut(s) 531, 1011, 1019
Tru9I TTAA 3 cut(s) 531, 1011, 1019
TscAI CASTG 3 cut(s) 496, 1342, 1732
TseI GCWGC 6 cut(s) 10, 332, 1185, 1706, 1924, 2012
TspGWI ACGGA 1 cut(s) 1764
TspRI CASTG 3 cut(s) 496, 1342, 1732
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 1952
XapI RAATTY 2 cut(s) 229, 627
XceI RCATGY 1 cut(s) 1067
XmnI GAANNNNTTC 3 cut(s) 254, 900, 1100
XspI CTAG 8 cut(s) 24, 282, 395, 777, 1182, 1322, 1527, 2065
Zsp2I ATGCAT 1 cut(s) 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.