Rw5G002420

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
2119390 .. 2122821
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002420.1

Sequence Viewer

Length: 2046 bp
ATGGTGGAGCTGCAGTCTTGTGCTAGATTGGTCAAGGCTTCTGCATTACGCGCGATAGAGGAAGGTATGAAAGGAGACGGTGTCGATGTTATTGCAGAGATTTCAGCTGAATTAGAAAGGGAAAGACAGAAGAATGCAGAACTTATGCACAGAATACTAATTCTTGAAGCTCGGATACAGGAAAAAGAGAATGAACCTCCTCGAACAAATGGACAGGGCAGTTGCTCAAATTCAATGGAAAGAAACTTGAAGAAGTTCAAGAGACAGAAGATTGAACTCACTAGTAACACAACTGAGGATGGTAGTATAACTGTTGTCCAAGCTGAAATTGCTGCACAGAAGAAGCATCATATTGAATCCTATGCCCTTGAAGATCCAATTGTAGATGACCGTCTAGTCAACTGGATGAGCATGGAGGAAACACAGGTTTTGCTTTCTGAAAAAGCTAAGGATGGTGATTCAACTGCAGATTGTGATGAAACTGATGACAGTGATGATGAAGATGAAGATTATCGCGAAGAAGATGGCATTAACAATGACCATAAAGAAGCTGATGGAACTTCAAGACTTATTGATGAACTGATTTATGAAGTTGCTGATAAGGGTTCAGATGCAGGGTGTGCAGAAATTTTCTCAGGTGCAGTTCAGCCACTATTTCAAAATGTGAACCGAGAAACCAATGAAGAACTACCAATAGCGCCAATTTGTAATGAGATGGAAATTAGAAACCAAAACAAGACAGAACCTAAGGATTTTGGAAGTTTCAAGGTACCAACTAGTATCCCAACTTCGAAGAAGGAGTTTATTCATACAGGATCTGGGAGCCTATCACAACATAAAAAGCCTCCAAAGTTGGCATTTTGCCCAAAAGAAGTGAAGAGAATAATTGATTCAGAATCCCTTCTTCAGAAAAATGCTCATTCACACACAATAAGGAAGATCATAGTTTTTGCATCTCTTGGTATAAGGCATGGTTGTGAAGATATATATGAATTAGACTTCAACCATTTTAACATTTTAAGGAAGGGCGATCAATATATATCTCCAACAGATCCTGGGGAGCATGTTCTGTATGAAAATCCTGGTGTTCGGAGGAAGGTATTCTATCCAAACCGAAAGAACCCTACACTATGTCCAGTTCAAATACTTGAGGAAGAGAAGGCTATGCGTCCATCAGATCCTAGCTGCCCATCATGCTTATTTCTATGCATCAAGTATGGTGGAAGGACAAGAAACCTTCCCCAAAATGAATATGTCAGACAGCGCATGGGAAGAAACAAGCTAAAGTCTTTTGGGCCATTGATGTGTCGAATGGCAATGCTAGCTCATGTTCGCAGTGGGAGCTTCTTTTTCAAAGCCTTGGGAATCACACTTCTTTTCATGGCTGGTTTTCCTGATGACCTGGTTCAAAGGGAAACCAAATATCGGAACTTAGACTTGCTCCAGAAATATTACAGGACAGATGAGGATGCTGAAGGAGAGGAGTTATTTCTTGCATATCCTATGATAGAAGATGATACTCAGTTTTGTGGCAAGACTTCTTCGACAAAAACAAAGGGAAAGAAACAAACTCACTCTAATAGTAAGCCTCATAATATGCAGAAGATTTCATTCCCAAATGGTACATTTTCAAGCTCTGCACCTCAATTTGGACTAATGAATCAAACCTGTATTCCCCCATTAGCTGCTCCACCAATCTCAAACACTGTGATCACCAATGCTGGTACTAATATCCCCTATCATAATCCAAACCCGTATCACCTTTTTCCTCCACAACCATCAAACACTTTCATGCCTATGGTATATTGGCCTCCCCCAAACACATTTTCTCCTGGACTACCTTATCAATCTACACATGGTTACCGGTCTTACCCTTCTGCCGGAAATTACTTCGTCCATCCGCAGCCTTATTACAGCCATCCATCCTGCGGTCCATTGATCTCCAAAACGATAGAAGTAGCAAAGAAAAATGGCATGGCCTCGGAGGAAGCTGCTGATAGTGATTATGATTGTAGTTCAAGCAGTATAGAGCCAAAGAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

681

Amino Acids

76.68

Weight (kDa)

5.77

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
Acc65I GGTACC 1 cut(s) 769
AccB1I GGYRCC 1 cut(s) 769
AccII CGCG 3 cut(s) 51, 53, 516
AciI CCGC 2 cut(s) 1901, 1929
AclWI GGATC 4 cut(s) 368, 823, 1046, 1172
AcsI RAATTY 2 cut(s) 229, 627
AcuI CTGAAG 2 cut(s) 890, 1494
AfaI GTAC 3 cut(s) 771, 1624, 1726
AfiI CCNNNNNNNGG 4 cut(s) 1425, 1649, 1880, 1928
AgeI ACCGGT 1 cut(s) 1863
AhlI ACTAGT 2 cut(s) 281, 776
AjnI CCWGG 4 cut(s) 1054, 1081, 1401, 1831
AjuI GAANNNNNNNTTGG 2 cut(s) 1810, 1842
Alw26I GTCTC 2 cut(s) 69, 256
AlwI GGATC 4 cut(s) 368, 823, 1046, 1172
AlwNI CAGNNNCTG 2 cut(s) 818, 1055
AoxI GGCC 3 cut(s) 1295, 1808, 1977
ApeKI GCWGC 6 cut(s) 10, 332, 1185, 1685, 1903, 1991
ApoI RAATTY 2 cut(s) 229, 627
AsiGI ACCGGT 1 cut(s) 1863
Asp700I GAANNNNTTC 3 cut(s) 254, 900, 1100
Asp718I GGTACC 1 cut(s) 769
AspLEI GCGC 3 cut(s) 53, 700, 1266
AspS9I GGNCC 2 cut(s) 1295, 1931
AsuHPI GGTGA 3 cut(s) 467, 1705, 1751
AsuII TTCGAA 1 cut(s) 791
AsuNHI GCTAGC 1 cut(s) 1321
AvaII GGWCC 1 cut(s) 1931
AxyI CCTNAGG 1 cut(s) 747
BanI GGYRCC 1 cut(s) 769
BarI GAAGNNNNNNTAC 4 cut(s) 159, 191, 772, 804
BbvI GCAGC 5 cut(s) 319, 1172, 1672, 1915, 1978
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 4 cut(s) 1056, 1083, 1403, 1833
BciVI GTATCC 2 cut(s) 168, 791
BclI TGATCA 1 cut(s) 1710
BcoDI GTCTC 2 cut(s) 69, 256
BcuI ACTAGT 2 cut(s) 281, 776
BfaI CTAG 7 cut(s) 24, 282, 395, 777, 1182, 1322, 2044
BfmI CTRYAG 2 cut(s) 11, 465
BfoI RGCGCY 1 cut(s) 701
BfuI GTATCC 2 cut(s) 168, 791
BisI GCNGC 6 cut(s) 11, 333, 1186, 1686, 1904, 1992
BlsI GCNGC 6 cut(s) 12, 334, 1187, 1687, 1905, 1993
Bme1390I CCNGG 4 cut(s) 1056, 1083, 1403, 1833
Bme18I GGWCC 1 cut(s) 1931
BmgT120I GGNCC 2 cut(s) 1295, 1931
BmiI GGNNCC 2 cut(s) 771, 824
BmrFI CCNGG 4 cut(s) 1056, 1083, 1403, 1833
BmsI GCATC 5 cut(s) 355, 601, 962, 1218, 1459
BmtI GCTAGC 1 cut(s) 1325
BpmI CTGGAG 1 cut(s) 1427
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 791
BpuEI CTTGAG 1 cut(s) 1169
BsaJI CCNNGG 3 cut(s) 1055, 1359, 1980
BsaWI WCCGGW 1 cut(s) 1863
BsaXI ACNNNNNCTCC 5 cut(s) 29, 66, 96, 1813, 1843
Bsc4I CCNNNNNNNGG 4 cut(s) 1425, 1649, 1880, 1928
Bse118I RCCGGY 1 cut(s) 1863
Bse1I ACTGG 2 cut(s) 407, 1136
Bse21I CCTNAGG 1 cut(s) 747
Bse3DI GCAATG 1 cut(s) 1323
BseBI CCWGG 4 cut(s) 1056, 1083, 1403, 1833
BseDI CCNNGG 3 cut(s) 1055, 1359, 1980
BseGI GGATG 7 cut(s) 304, 411, 457, 1474, 1897, 1918, 1922
BseLI CCNNNNNNNGG 4 cut(s) 1425, 1649, 1880, 1928
BseMI GCAATG 1 cut(s) 1323
BseMII CTCAG 3 cut(s) 285, 648, 1535
BseNI ACTGG 2 cut(s) 407, 1136
BseRI GAGGAG 2 cut(s) 189, 1496
BseXI GCAGC 5 cut(s) 319, 1172, 1672, 1915, 1978
BsgI GTGCAG 4 cut(s) 318, 642, 660, 1623
Bsh1236I CGCG 3 cut(s) 51, 53, 516
BshFI GGCC 3 cut(s) 1297, 1810, 1979
BshNI GGYRCC 1 cut(s) 769
BshTI ACCGGT 1 cut(s) 1863
BsiSI CCGG 2 cut(s) 1864, 1881
BslI CCNNNNNNNGG 4 cut(s) 1425, 1649, 1880, 1928
BsmAI GTCTC 2 cut(s) 69, 256
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 3 cut(s) 1297, 1810, 1979
Bsp119I TTCGAA 1 cut(s) 791
Bsp143I GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1710, 1938
Bsp68I TCGCGA 1 cut(s) 516
BspACI CCGC 2 cut(s) 1901, 1929
BspANI GGCC 3 cut(s) 1297, 1810, 1979
BspCNI CTCAG 3 cut(s) 286, 647, 1534
BspFNI CGCG 3 cut(s) 51, 53, 516
BspLI GGNNCC 2 cut(s) 771, 824
BspMAI CTGCAG 2 cut(s) 15, 469
BspOI GCTAGC 1 cut(s) 1325
BspPI GGATC 4 cut(s) 368, 823, 1046, 1172
BspT104I TTCGAA 1 cut(s) 791
BspT107I GGYRCC 1 cut(s) 769
BsrDI GCAATG 1 cut(s) 1323
BsrFI RCCGGY 1 cut(s) 1863
BsrI ACTGG 2 cut(s) 407, 1136
BssAI RCCGGY 1 cut(s) 1863
BssECI CCNNGG 3 cut(s) 1055, 1359, 1980
BssMI GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1710, 1938
BssT1I CCWWGG 1 cut(s) 1359
Bst2UI CCWGG 4 cut(s) 1056, 1083, 1403, 1833
Bst4CI ACNGT 5 cut(s) 80, 313, 392, 491, 1708
Bst6I CTCTTC 2 cut(s) 872, 1149
BstAPI GCANNNNNTGC 1 cut(s) 620
BstBI TTCGAA 1 cut(s) 791
BstC8I GCNNGC 1 cut(s) 1323
BstDEI CTNAG 6 cut(s) 294, 447, 634, 747, 1432, 1521
BstEII GGTNACC 1 cut(s) 1859
BstF5I GGATG 7 cut(s) 304, 411, 457, 1474, 1897, 1918, 1922
BstFNI CGCG 3 cut(s) 51, 53, 516
BstH2I RGCGCY 1 cut(s) 701
BstHHI GCGC 3 cut(s) 53, 700, 1266
BstKTI GATC 8 cut(s) 376, 818, 942, 1033, 1054, 1180, 1713, 1941
BstMAI GTCTC 2 cut(s) 69, 256
BstMBI GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1710, 1938
BstMWI GCNNNNNNNGC 6 cut(s) 50, 329, 620, 1194, 1322, 1341
BstNI CCWGG 4 cut(s) 1056, 1083, 1403, 1833
BstNSI RCATGY 1 cut(s) 1067
BstPI GGTNACC 1 cut(s) 1859
BstSCI CCNGG 4 cut(s) 1054, 1081, 1401, 1831
BstSFI CTRYAG 2 cut(s) 11, 465
BstUI CGCG 3 cut(s) 51, 53, 516
BstV1I GCAGC 5 cut(s) 319, 1172, 1672, 1915, 1978
BstX2I RGATCY 4 cut(s) 373, 815, 1051, 1177
BstYI RGATCY 4 cut(s) 373, 815, 1051, 1177
Bsu36I CCTNAGG 1 cut(s) 747
BsuI GTATCC 2 cut(s) 168, 791
BsuRI GGCC 3 cut(s) 1297, 1810, 1979
BtsCI GGATG 7 cut(s) 304, 411, 457, 1474, 1897, 1918, 1922
BtsI GCAGTG 1 cut(s) 1342
BtsIMutI CAGTG 3 cut(s) 496, 1342, 1704
BtuMI TCGCGA 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 1323
CaiI CAGNNNCTG 2 cut(s) 818, 1055
CfoI GCGC 3 cut(s) 53, 700, 1266
Cfr10I RCCGGY 1 cut(s) 1863
Cfr13I GGNCC 2 cut(s) 1295, 1931
CseI GACGC 1 cut(s) 1157
CsiI ACCWGGT 1 cut(s) 1401
Csp6I GTAC 3 cut(s) 770, 1623, 1725
CspAI ACCGGT 1 cut(s) 1863
CspCI CAANNNNNGTGG 2 cut(s) 1201, 1236
CviQI GTAC 3 cut(s) 770, 1623, 1725
DdeI CTNAG 6 cut(s) 294, 447, 634, 747, 1432, 1521
DpnI GATC 8 cut(s) 375, 817, 941, 1032, 1053, 1179, 1712, 1940
DpnII GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1710, 1938
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
Eam1104I CTCTTC 2 cut(s) 872, 1149
EarI CTCTTC 2 cut(s) 872, 1149
Eco130I CCWWGG 1 cut(s) 1359
Eco47I GGWCC 1 cut(s) 1931
Eco57I CTGAAG 2 cut(s) 890, 1494
Eco81I CCTNAGG 1 cut(s) 747
Eco91I GGTNACC 1 cut(s) 1859
EcoO65I GGTNACC 1 cut(s) 1859
EcoRII CCWGG 4 cut(s) 1054, 1081, 1401, 1831
EcoT14I CCWWGG 1 cut(s) 1359
EcoT22I ATGCAT 1 cut(s) 1211
ErhI CCWWGG 1 cut(s) 1359
Esp3I CGTCTC 1 cut(s) 69
FbaI TGATCA 1 cut(s) 1710
Fnu4HI GCNGC 6 cut(s) 11, 333, 1186, 1686, 1904, 1992
FokI GGATG 7 cut(s) 311, 418, 464, 1481, 1884, 1905, 1909
Fsp4HI GCNGC 6 cut(s) 11, 333, 1186, 1686, 1904, 1992
FspBI CTAG 7 cut(s) 24, 282, 395, 777, 1182, 1322, 2044
GlaI GCGC 3 cut(s) 52, 699, 1265
GluI GCNGC 6 cut(s) 11, 333, 1186, 1686, 1904, 1992
GsuI CTGGAG 1 cut(s) 1427
HaeII RGCGCY 1 cut(s) 701
HaeIII GGCC 3 cut(s) 1297, 1810, 1979
HapII CCGG 2 cut(s) 1864, 1881
HgaI GACGC 1 cut(s) 1157
HhaI GCGC 3 cut(s) 53, 700, 1266
Hin6I GCGC 3 cut(s) 51, 698, 1264
HinP1I GCGC 3 cut(s) 51, 698, 1264
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 6 cut(s) 356, 458, 890, 896, 1365, 1660
HpaII CCGG 2 cut(s) 1864, 1881
HphI GGTGA 3 cut(s) 467, 1705, 1751
Hpy166II GTNNAC 2 cut(s) 400, 667
Hpy188III TCNNGA 6 cut(s) 164, 259, 515, 564, 1394, 1444
Hpy8I GTNNAC 2 cut(s) 400, 667
HpyCH4III ACNGT 5 cut(s) 80, 313, 392, 491, 1708
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 329, 620, 1194, 1322, 1341
HpyF3I CTNAG 6 cut(s) 294, 447, 634, 747, 1432, 1521
HspAI GCGC 3 cut(s) 51, 698, 1264
KpnI GGTACC 1 cut(s) 773
Ksp22I TGATCA 1 cut(s) 1710
Kzo9I GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1710, 1938
LmnI GCTCC 6 cut(s) 7, 822, 1060, 1341, 1446, 1693
Lsp1109I GCAGC 5 cut(s) 319, 1172, 1672, 1915, 1978
LweI GCATC 5 cut(s) 355, 601, 962, 1218, 1459
MabI ACCWGGT 1 cut(s) 1401
MaeI CTAG 7 cut(s) 24, 282, 395, 777, 1182, 1322, 2044
MaeIII GTNAC 2 cut(s) 284, 1859
MalI GATC 8 cut(s) 375, 817, 941, 1032, 1053, 1179, 1712, 1940
MboI GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1710, 1938
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 4 cut(s) 373, 815, 1051, 1177
MmeI TCCRAC 1 cut(s) 1070
Mph1103I ATGCAT 1 cut(s) 1211
MroXI GAANNNNTTC 3 cut(s) 254, 900, 1100
MseI TTAA 3 cut(s) 531, 1011, 1019
MslI CAYNNNNRTG 4 cut(s) 975, 1303, 1790, 1796
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 2 cut(s) 1864, 1881
MspR9I CCNGG 4 cut(s) 1056, 1083, 1403, 1833
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 4 cut(s) 1056, 1083, 1403, 1833
MvnI CGCG 3 cut(s) 51, 53, 516
MwoI GCNNNNNNNGC 6 cut(s) 50, 329, 620, 1194, 1322, 1341
NdeII GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1710, 1938
NheI GCTAGC 1 cut(s) 1321
NlaIV GGNNCC 2 cut(s) 771, 824
NruI TCGCGA 1 cut(s) 516
NsiI ATGCAT 1 cut(s) 1211
NspI RCATGY 1 cut(s) 1067
NspV TTCGAA 1 cut(s) 791
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 3 cut(s) 254, 900, 1100
PfeI GAWTC 6 cut(s) 356, 458, 890, 896, 1365, 1660
PflFI GACNNNGTC 1 cut(s) 80
PfoI TCCNGGA 1 cut(s) 1831
PinAI ACCGGT 1 cut(s) 1863
PkrI GCNGC 6 cut(s) 12, 334, 1187, 1687, 1905, 1993
Psp6I CCWGG 4 cut(s) 1054, 1081, 1401, 1831
PspEI GGTNACC 1 cut(s) 1859
PspGI CCWGG 4 cut(s) 1054, 1081, 1401, 1831
PspN4I GGNNCC 2 cut(s) 771, 824
PspPI GGNCC 2 cut(s) 1295, 1931
PstI CTGCAG 2 cut(s) 15, 469
PstNI CAGNNNCTG 2 cut(s) 818, 1055
PsuI RGATCY 4 cut(s) 373, 815, 1051, 1177
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 107
RruI TCGCGA 1 cut(s) 516
RsaI GTAC 3 cut(s) 771, 1624, 1726
RsaNI GTAC 3 cut(s) 770, 1623, 1725
RseI CAYNNNNRTG 4 cut(s) 975, 1303, 1790, 1796
SaqAI TTAA 3 cut(s) 531, 1011, 1019
SatI GCNGC 6 cut(s) 11, 333, 1186, 1686, 1904, 1992
Sau3AI GATC 8 cut(s) 373, 815, 939, 1030, 1051, 1177, 1710, 1938
Sau96I GGNCC 2 cut(s) 1295, 1931
ScrFI CCNGG 4 cut(s) 1056, 1083, 1403, 1833
SexAI ACCWGGT 1 cut(s) 1401
SfaNI GCATC 5 cut(s) 355, 601, 962, 1218, 1459
SfcI CTRYAG 2 cut(s) 11, 465
SfuI TTCGAA 1 cut(s) 791
SinI GGWCC 1 cut(s) 1931
SmiMI CAYNNNNRTG 4 cut(s) 975, 1303, 1790, 1796
SmlI CTYRAG 1 cut(s) 1148
SmoI CTYRAG 1 cut(s) 1148
SpeI ACTAGT 2 cut(s) 281, 776
SsiI CCGC 2 cut(s) 1901, 1929
SspI AATATT 1 cut(s) 1451
SspMI CTAG 7 cut(s) 24, 282, 395, 777, 1182, 1322, 2044
StyD4I CCNGG 4 cut(s) 1054, 1081, 1401, 1831
StyI CCWWGG 1 cut(s) 1359
TaaI ACNGT 5 cut(s) 80, 313, 392, 491, 1708
TaqI TCGA 5 cut(s) 84, 202, 791, 1309, 1544
TfiI GAWTC 6 cut(s) 356, 458, 890, 896, 1365, 1660
Tru1I TTAA 3 cut(s) 531, 1011, 1019
Tru9I TTAA 3 cut(s) 531, 1011, 1019
TscAI CASTG 3 cut(s) 496, 1342, 1711
TseI GCWGC 6 cut(s) 10, 332, 1185, 1685, 1903, 1991
TspRI CASTG 3 cut(s) 496, 1342, 1711
Tth111I GACNNNGTC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 1931
XapI RAATTY 2 cut(s) 229, 627
XceI RCATGY 1 cut(s) 1067
XmnI GAANNNNTTC 3 cut(s) 254, 900, 1100
XspI CTAG 7 cut(s) 24, 282, 395, 777, 1182, 1322, 2044
Zsp2I ATGCAT 1 cut(s) 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.