Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Forward (+)

56606207 .. 56613135

Gene Structure 6929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0401400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3114 bp

ATGGCTATGGCTAGTCCTCAGAGAATCGGTCCGGCCGACAGGGATATCGACCAGGCCATAGCGGCGCTTAAGAAAGGCGCGACTTTGTTAAAATACGGGCGCAGAGGGAAGCCGAAATTCTGCCCTTTCCGGCTTTCTAATGATGAGGCTTTACTGATATGGTACTCTGGAAAAGAAGAGAAACATGTTAGACTTAGTCATGTTACTACCATTATTCCTGGGCAGCGTACTGCAATATTTCAGCGGTATCCACGACCAGAAAAGGAGTACCAATCATTTTCTCTTCTTTACAATGATAGATCCTTGGACTTGATATGTAAAGACAAGGATGAGGCTGAAGTTTGGTTTGTTGGTCTTAAGGCATTAATTACTCGAGGTTCCTACCGGCATTTTAGAAGTGAGTCAAGAAGTGACAACAGTGTATCAACAGATACCCCCCTTGCTCATACTCAAAGAAGTTCTCCATCAATCGCACCATTCACCTGTACACAACAGGATGCTGCAGGAGATACTGAGGGACTTCCTTTGGAGACTGCCCCAACAAATAGATTAGGAAGGGCATTTGCTGACATAATATCATATACTGATGCTACCAAGACTCAAGCTGAGTCACCTCCTATTTCCTCATTATCACCTGCATCTGTAGATAATTCAAATGGTCGAAGTTCCACATCTGAAGCAATTCGAATTAGTTTATCTAGTGCCGTAAGCTCATCAAGTCAAGGTTCTTGTCCAGATGACTTTGATGCTTTAGGAGATGTTTTTATTTGGGGTGAAAGTATTAATGGTGGAGTACTAGGAGGCAATGTAGATAGAATAGGAAGATCAGTTTCTTCCAGTATGGATGCTCTCCTGCCCAAGGCATTGGAATCAACAGTGGTCATAGATGCTCATGGAATTGCTTGTGGTACCAGACATATTGCACTGGTCACCAGGCAAGGGGAAATTTTCAGTTGGGGAGAGGAGTCAGGAGGCAGGCTGGGTCATGGTGTAGGAGCAGATGTTTCCCACCCTAAGCTCATTGGCACTCTTAGTGGCATGAATGTTGAATTAGTTGCTTGTGGGGAGTATCATACCTGTGCTGTTACAATTTCTGGAGAGCTCTATACATGGGGTGATGGCACTAATAATTTTGGTCTACTTGGACATGGAAGTGAAGTTAGTCACTGGATTCCCAAAAAGATAAGTGGTCATATGGAAGGTATACACATATCCTATATCTCTTGCGGACTGTGGCATACAGCTGTTGTGACCTCAGCTGGTCGGTTATTTACATTTGGGGATGGTTCTTTTGGTGCTTTAGGCCATGGAGATCATAGTAGCACAAGTACTCCACGAGAGGTGGAAACTTTGAGAGGGCTGAGAACAGCAAGGGTTGCTTGTGGCGCTTGGCACACTGCTGCAGTTGTTGCAATAATAAAGGAATCATATATGTCTGAGGATTCTGGTAACTCTGCTTTTGGAAAGCTGTACACCTGGGGCGATGGAGATAAAGGCCGACTTGGACATGGCGATGAAGTTTCTAGACTAGCTCCTGAATGTGTAGCTGCATTGGTTAATAAAAATTTCTGTCAAGTAGCATGTGGGCATAGTCTCACAGTTGCCCTTACAACATCAGGACATGTATATACAATGGGAAGCGCTGCTTGTGGACAGCTTGGCAATCCTTCAGCTGATGGAAAAGTTCCCACTCGTGTTGAAGGTACAATTGCAGATAGCTTCGTCGAAGAAATCGCCTGTGGTTCTTGTCATGTGGCAGTTTTGACTTCCAAGACAGAGGTTTATACTTGGGGAAGGGGTTCAAATGGGCAATTAGGACACGGAGACAATGATAATAGAAAGACACCTACTCTCGTTGAATTTATGAAGGATAAACAAGTAAAGAGTGTAGTATGTGGTTCAAACCTTACTGCAGTCATTTGTCTTCATAAATGGGCATCTGGTGCTGACCATTCCGTTTGCTCTAATTGTCATAATCCCTTTGGTTTCAGAAGAAAACGTCATAATTGTTATAATTGTGGGTTAGTTTTCTGTAAAGCATGCAGCAGCAAGAAAGTTCTGAGAGCTGCCTTGGCTCCAAATGTGAACAAGCCCTATCGGGTGTGTGATGATTGTTATACTAAACTAAAGAAAGCTGCAGAAGCTAGTTCTGTTGTACGAAATCCCAAAATTAGAAGTGGACATGTACACCATAAATCCTGTGAGACGGCAGACAAAGAGACTCTAATGCCTATGTTACGGGCAACACTGTCCAGAATTTCATCCTTTGGCTCAGGCAACCATACTGAAAGCAAGATTCCTAAGCCTGAAAGAAAACCAGAAGCGCGTGATAATCGTGTCTTTCCAATGCTAAATGGACATTTGCAGTTAGGGGCCTTTACTTTGTCAAAAGCATCAACTTCCCTTGATGGAGATCCAGGAAAGTTCATGTCAGCGTCCATGCCTACTTCCAGAAAGTCTTCTGTGTTTGCATCTCCTGTTTCAGGAAAGTCAAGCCCACGTCAGTCTTCTGAAGACATTCTTGAGGACCCAAAGTTAGTAAATGGAAGTTTGAGCCGAGAAATTATCAGTTTAAGGGCACAGGTAGAAGACCTTACTTTCAAATCCCAACGACTTGAAGCTGAACTTCAAAGAACATTAAAGAAATTGAACGAGGTCTCTGCAGTAGCTACCGATGAAGCTGAAAAATGCAAATCTGCAAAGGAAGTTATCAATTCTCTAACTGCTCAGTTGAAGGAGATGGCTGAAAGAATGCCAGAAGGACATGTTGCAAGTTGCAATGCAGGTTCAACTCCTCATGCCATCACTTTTGTAAATCAGTTATCCAAAGAGAACCCTCAGACAAATATGACTACTCCTCAAATGGAGTCCAATGGCAATTCAATGGATCGGATCTTAGGGAATGGAACTAAATCACAGAGTGGAAAGGTAGAGCGAGTTCTACAAGATGAACCTGGTGTCTATATAACTTTATGCTCCTTGCCGGGCGGTGGTAATGAACTCAGACGTGTTCGCTTCAGTCGGAGACATTTCACTGAAGAAGCAGCAGAGAGATGGTGGGCAGATAATGGCGCAATGTTGTGCGAGCGGCACAATATACAAAGTGCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009751 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 Pkinase

Protein Analysis

1037

Amino Acids

111.94

Weight (kDa)

8.28

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	18 - 123	2.8e-06	Pleckstrin homology domain
WD40_RLD	PF25390	253 - 638	2e-79	RCC1-like domain
RCC1	PF00415	313 - 362	8e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	351 - 376	4.3e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	365 - 417	5.2e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	421 - 469	7.7e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	488 - 536	1.8e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	539 - 588	1.2e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	576 - 604	5.3e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	593 - 640	3.6e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	644 - 710	3.2e-16	FYVE zinc finger
BRX_N	PF13713	892 - 919	3.7e-11	Transcription factor BRX N-terminal domain
BRX	PF08381	978 - 1031	2.3e-22	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2013
AarI	CACCTGC	1 cut(s)	643
Acc36I	ACCTGC	2 cut(s)	643, 2774
Acc65I	GGTACC	1 cut(s)	908
AccB1I	GGYRCC	1 cut(s)	908
AccBSI	CCGCTC	1 cut(s)	3088
AccI	GTMKAC	2 cut(s)	1138, 1204
AccII	CGCG	2 cut(s)	80, 2326
AciI	CCGC	5 cut(s)	62, 244, 1227, 2988, 3088
AclWI	GGATC	4 cut(s)	294, 2408, 2895, 2900
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	5 cut(s)	116, 945, 1564, 1859, 2256
AcuI	CTGAAG	6 cut(s)	357, 696, 1653, 2532, 3001, 3057
AdeI	CACNNNGTG	1 cut(s)	2921
AfeI	AGCGCT	1 cut(s)	1642
AfiI	CCNNNNNNNGG	4 cut(s)	859, 939, 2483, 2990
AflII	CTTAAG	2 cut(s)	68, 356
AflIII	ACRYGT	5 cut(s)	184, 1621, 2182, 2764, 3007
AjiI	CACGTC	2 cut(s)	2501, 3008
AjnI	CCWGG	6 cut(s)	51, 217, 932, 1475, 2416, 2953
Alw21I	GWGCWC	1 cut(s)	1104
Alw26I	GTCTC	7 cut(s)	524, 1598, 1818, 2198, 2213, 2662, 3019
AlwI	GGATC	4 cut(s)	294, 2408, 2895, 2900
Ama87I	CYCGRG	1 cut(s)	372
Aor51HI	AGCGCT	1 cut(s)	1642
AoxI	GGCC	5 cut(s)	33, 54, 1303, 1495, 2373
ApoI	RAATTY	5 cut(s)	116, 945, 1564, 1859, 2256
AseI	ATTAAT	2 cut(s)	365, 783
Asp700I	GAANNNNTTC	4 cut(s)	681, 1798, 2458, 2517
Asp718I	GGTACC	1 cut(s)	908
AspLEI	GCGC	7 cut(s)	67, 80, 102, 1388, 1643, 2326, 3074
AspS9I	GGNCC	3 cut(s)	29, 2373, 2527
AsuC2I	CCSGG	1 cut(s)	2985
AsuHPI	GGTGA	6 cut(s)	472, 603, 624, 785, 922, 1127
AsuII	TTCGAA	1 cut(s)	685
AvaI	CYCGRG	1 cut(s)	372
AvaII	GGWCC	2 cut(s)	29, 2527
BaeGI	GKGCMC	1 cut(s)	2581
BanI	GGYRCC	1 cut(s)	908
BanII	GRGCYC	1 cut(s)	1104
BauI	CACGAG	2 cut(s)	1335, 1692
BbsI	GAAGAC	5 cut(s)	1916, 2451, 2499, 2520, 2595
Bbv12I	GWGCWC	1 cut(s)	1104
BbvCI	CCTCAGC	1 cut(s)	1255
BccI	CCATC	9 cut(s)	472, 1112, 1277, 1478, 1670, 2402, 2734, 2810, 3048
BceAI	ACGGC	2 cut(s)	689, 2223
BcgI	CGANNNNNNTGC	2 cut(s)	2642, 2676
BciT130I	CCWGG	6 cut(s)	53, 219, 934, 1477, 2418, 2955
BciVI	GTATCC	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	2985
BcoDI	GTCTC	7 cut(s)	524, 1598, 1818, 2198, 2213, 2662, 3019
BfaI	CTAG	6 cut(s)	12, 699, 797, 1524, 1529, 2145
BfmI	CTRYAG	6 cut(s)	501, 642, 1401, 1911, 2136, 2661
BfoI	RGCGCY	3 cut(s)	68, 1389, 1644
BfrI	CTTAAG	2 cut(s)	68, 356
BfuAI	ACCTGC	2 cut(s)	643, 2774
BfuI	GTATCC	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	62
BmcAI	AGTACT	2 cut(s)	795, 1330
Bme1390I	CCNGG	7 cut(s)	53, 219, 934, 1477, 2418, 2955, 2985
Bme18I	GGWCC	2 cut(s)	29, 2527
BmeT110I	CYCGRG	1 cut(s)	372
BmgBI	CACGTC	2 cut(s)	2501, 3008
BmgT120I	GGNCC	3 cut(s)	29, 2373, 2527
BmiI	GGNNCC	5 cut(s)	379, 910, 2076, 2374, 2529
BmrFI	CCNGG	7 cut(s)	53, 219, 934, 1477, 2418, 2955, 2985
BmsI	GCATC	9 cut(s)	487, 577, 647, 736, 835, 877, 1946, 2402, 2480
BpiI	GAAGAC	5 cut(s)	1916, 2451, 2499, 2520, 2595
BpmI	CTGGAG	1 cut(s)	1116
Bpu10I	CCTNAGC	4 cut(s)	1014, 1255, 2272, 2301
Bpu14I	TTCGAA	1 cut(s)	685
BpuEI	CTTGAG	2 cut(s)	585, 2543
BpuMI	CCSGG	1 cut(s)	2985
BsaBI	GATNNNNATC	1 cut(s)	2412
BsaI	GGTCTC	1 cut(s)	2662
BsaJI	CCNNGG	6 cut(s)	218, 303, 858, 1306, 1476, 2070
BsaXI	ACNNNNNCTCC	6 cut(s)	792, 822, 987, 1017, 1315, 1345
Bsc4I	CCNNNNNNNGG	4 cut(s)	859, 939, 2483, 2990
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	3 cut(s)	837, 930, 1172
Bse3DI	GCAATG	3 cut(s)	811, 2785, 3081
Bse8I	GATNNNNATC	1 cut(s)	2412
BseBI	CCWGG	6 cut(s)	53, 219, 934, 1477, 2418, 2955
BseDI	CCNNGG	6 cut(s)	218, 303, 858, 1306, 1476, 2070
BseGI	GGATG	5 cut(s)	334, 502, 850, 1288, 2261
BseJI	GATNNNNATC	1 cut(s)	2412
BseLI	CCNNNNNNNGG	4 cut(s)	859, 939, 2483, 2990
BseMI	GCAATG	3 cut(s)	811, 2785, 3081
BseNI	ACTGG	3 cut(s)	837, 930, 1172
BseRI	GAGGAG	3 cut(s)	977, 2784, 2847
BseSI	GKGCMC	1 cut(s)	2581
BseX3I	CGGCCG	1 cut(s)	33
BseYI	CCCAGC	1 cut(s)	979
Bsh1236I	CGCG	2 cut(s)	80, 2326
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	5 cut(s)	35, 56, 1305, 1497, 2375
BshNI	GGYRCC	1 cut(s)	908
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	1104
BsiHKCI	CYCGRG	1 cut(s)	372
BsiSI	CCGG	4 cut(s)	32, 130, 385, 2984
BslFI	GGGAC	1 cut(s)	531
BslI	CCNNNNNNNGG	4 cut(s)	859, 939, 2483, 2990
BsmAI	GTCTC	7 cut(s)	524, 1598, 1818, 2198, 2213, 2662, 3019
BsmBI	CGTCTC	1 cut(s)	2198
BsmFI	GGGAC	1 cut(s)	531
BsmI	GAATGC	1 cut(s)	2757
BsnI	GGCC	5 cut(s)	35, 56, 1305, 1497, 2375
Bso31I	GGTCTC	1 cut(s)	2662
BsoBI	CYCGRG	1 cut(s)	372
Bsp119I	TTCGAA	1 cut(s)	685
Bsp1286I	GDGCHC	2 cut(s)	1104, 2581
Bsp1407I	TGTACA	3 cut(s)	485, 1470, 2185
Bsp143I	GATC	6 cut(s)	299, 824, 1312, 2413, 2887, 2892
Bsp19I	CCATGG	1 cut(s)	1306
BspACI	CCGC	5 cut(s)	62, 244, 1227, 2988, 3088
BspANI	GGCC	5 cut(s)	35, 56, 1305, 1497, 2375
BspFNI	CGCG	2 cut(s)	80, 2326
BspLI	GGNNCC	5 cut(s)	379, 910, 2076, 2374, 2529
BspMAI	CTGCAG	5 cut(s)	505, 1405, 1915, 2140, 2665
BspMI	ACCTGC	2 cut(s)	643, 2774
BspPI	GGATC	4 cut(s)	294, 2408, 2895, 2900
BspT104I	TTCGAA	1 cut(s)	685
BspT107I	GGYRCC	1 cut(s)	908
BspTI	CTTAAG	2 cut(s)	68, 356
BspTNI	GGTCTC	1 cut(s)	2662
BsrBI	CCGCTC	1 cut(s)	3088
BsrDI	GCAATG	3 cut(s)	811, 2785, 3081
BsrFI	RCCGGY	1 cut(s)	384
BsrGI	TGTACA	3 cut(s)	485, 1470, 2185
BsrI	ACTGG	3 cut(s)	837, 930, 1172
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	6 cut(s)	218, 303, 858, 1306, 1476, 2070
BssMI	GATC	6 cut(s)	299, 824, 1312, 2413, 2887, 2892
BssNAI	GTATAC	1 cut(s)	1205
BssSI	CACGAG	2 cut(s)	1335, 1692
BssT1I	CCWWGG	4 cut(s)	303, 858, 1306, 2070
Bst1107I	GTATAC	1 cut(s)	1205
Bst2BI	CACGAG	2 cut(s)	1335, 1692
Bst2UI	CCWGG	6 cut(s)	53, 219, 934, 1477, 2418, 2955
Bst4CI	ACNGT	5 cut(s)	419, 877, 1233, 1600, 2250
Bst6I	CTCTTC	2 cut(s)	171, 288
BstAFI	CTTAAG	2 cut(s)	68, 356
BstAPI	GCANNNNNTGC	3 cut(s)	1376, 1409, 1943
BstAUI	TGTACA	3 cut(s)	485, 1470, 2185
BstBI	TTCGAA	1 cut(s)	685
BstC8I	GCNNGC	3 cut(s)	977, 2041, 3086
BstDSI	CCRYGG	1 cut(s)	1306
BstEII	GGTNACC	1 cut(s)	928
BstENI	CCTNNNNNAGG	2 cut(s)	857, 2481
BstF5I	GGATG	5 cut(s)	334, 502, 850, 1288, 2261
BstFNI	CGCG	2 cut(s)	80, 2326
BstH2I	RGCGCY	3 cut(s)	68, 1389, 1644
BstHHI	GCGC	7 cut(s)	67, 80, 102, 1388, 1643, 2326, 3074
BstKTI	GATC	6 cut(s)	302, 827, 1315, 2416, 2890, 2895
BstMAI	GTCTC	7 cut(s)	524, 1598, 1818, 2198, 2213, 2662, 3019
BstMBI	GATC	6 cut(s)	299, 824, 1312, 2413, 2887, 2892
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 1376, 1385, 1409, 1943, 2072, 2141
BstNI	CCWGG	6 cut(s)	53, 219, 934, 1477, 2418, 2955
BstNSI	RCATGY	6 cut(s)	188, 1584, 1625, 2043, 2186, 2768
BstPI	GGTNACC	1 cut(s)	928
BstSCI	CCNGG	7 cut(s)	51, 217, 932, 1475, 2416, 2953, 2983
BstSFI	CTRYAG	6 cut(s)	501, 642, 1401, 1911, 2136, 2661
BstSLI	GKGCMC	1 cut(s)	2581
BstUI	CGCG	2 cut(s)	80, 2326
BstV2I	GAAGAC	5 cut(s)	1916, 2451, 2499, 2520, 2595
BstX2I	RGATCY	3 cut(s)	299, 2413, 2892
BstXI	CCANNNNNNTGG	1 cut(s)	865
BstYI	RGATCY	3 cut(s)	299, 2413, 2892
BstZ17I	GTATAC	1 cut(s)	1205
BstZI	CGGCCG	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	5 cut(s)	35, 56, 1305, 1497, 2375
BtgI	CCRYGG	1 cut(s)	1306
BtgZI	GCGATG	2 cut(s)	1497, 1527
BtrI	CACGTC	2 cut(s)	2501, 3008
BtsCI	GGATG	5 cut(s)	334, 502, 850, 1288, 2261
BtsI	GCAGTG	1 cut(s)	1395
BtsIMutI	CAGTG	7 cut(s)	424, 882, 923, 1165, 1395, 2246, 3033
BveI	ACCTGC	2 cut(s)	643, 2774
Cac8I	GCNNGC	3 cut(s)	977, 2041, 3086
CfoI	GCGC	7 cut(s)	67, 80, 102, 1388, 1643, 2326, 3074
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	3 cut(s)	29, 2373, 2527
CpoI	CGGWCCG	1 cut(s)	29
CseI	GACGC	1 cut(s)	2424
CsiI	ACCWGGT	1 cut(s)	2953
CspCI	CAANNNNNGTGG	2 cut(s)	1678, 1713
CspI	CGGWCCG	1 cut(s)	29
DpnI	GATC	6 cut(s)	301, 826, 1314, 2415, 2889, 2894
DpnII	GATC	6 cut(s)	299, 824, 1312, 2413, 2887, 2892
DraIII	CACNNNGTG	1 cut(s)	2921
EaeI	YGGCCR	1 cut(s)	33
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	171, 288
EarI	CTCTTC	2 cut(s)	171, 288
Ecl136II	GAGCTC	1 cut(s)	1102
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	4 cut(s)	303, 858, 1306, 2070
Eco24I	GRGCYC	1 cut(s)	1104
Eco31I	GGTCTC	1 cut(s)	2662
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	29, 2527
Eco47III	AGCGCT	1 cut(s)	1642
Eco52I	CGGCCG	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	1102
Eco57I	CTGAAG	6 cut(s)	357, 696, 1653, 2532, 3001, 3057
Eco88I	CYCGRG	1 cut(s)	372
Eco91I	GGTNACC	1 cut(s)	928
EcoICRI	GAGCTC	1 cut(s)	1102
EcoNI	CCTNNNNNAGG	2 cut(s)	857, 2481
EcoO109I	RGGNCCY	2 cut(s)	2373, 2527
EcoO65I	GGTNACC	1 cut(s)	928
EcoRII	CCWGG	6 cut(s)	51, 217, 932, 1475, 2416, 2953
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	4 cut(s)	303, 858, 1306, 2070
EcoT38I	GRGCYC	1 cut(s)	1104
ErhI	CCWWGG	4 cut(s)	303, 858, 1306, 2070
Esp3I	CGTCTC	1 cut(s)	2198
FaqI	GGGAC	1 cut(s)	531
FauNDI	CATATG	1 cut(s)	1194
FblI	GTMKAC	2 cut(s)	1138, 1204
FokI	GGATG	5 cut(s)	341, 509, 857, 1295, 2248
FriOI	GRGCYC	1 cut(s)	1104
FspBI	CTAG	6 cut(s)	12, 699, 797, 1524, 1529, 2145
GlaI	GCGC	7 cut(s)	66, 79, 101, 1387, 1642, 2325, 3073
GsaI	CCCAGC	1 cut(s)	983
GsuI	CTGGAG	1 cut(s)	1116
HaeII	RGCGCY	3 cut(s)	68, 1389, 1644
HaeIII	GGCC	5 cut(s)	35, 56, 1305, 1497, 2375
HapII	CCGG	4 cut(s)	32, 130, 385, 2984
HgaI	GACGC	1 cut(s)	2424
HhaI	GCGC	7 cut(s)	67, 80, 102, 1388, 1643, 2326, 3074
Hin6I	GCGC	7 cut(s)	65, 78, 100, 1386, 1641, 2324, 3072
HinP1I	GCGC	7 cut(s)	65, 78, 100, 1386, 1641, 2324, 3072
HpaII	CCGG	4 cut(s)	32, 130, 385, 2984
HphI	GGTGA	6 cut(s)	472, 603, 624, 785, 922, 1127
Hpy166II	GTNNAC	8 cut(s)	488, 1139, 1205, 1473, 1652, 2086, 2180, 2188
Hpy8I	GTNNAC	8 cut(s)	488, 1139, 1205, 1473, 1652, 2086, 2180, 2188
Hpy99I	CGWCG	1 cut(s)	1727
HpyAV	CCTTC	8 cut(s)	549, 1193, 1677, 1694, 1788, 1861, 2728, 2753
HpyCH4III	ACNGT	5 cut(s)	419, 877, 1233, 1600, 2250
HpyCH4IV	ACGT	3 cut(s)	1999, 2500, 3007
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 1376, 1385, 1409, 1943, 2072, 2141
HpySE526I	ACGT	3 cut(s)	1999, 2500, 3007
HspAI	GCGC	7 cut(s)	65, 78, 100, 1386, 1641, 2324, 3072
KpnI	GGTACC	1 cut(s)	912
Kzo9I	GATC	6 cut(s)	299, 824, 1312, 2413, 2887, 2892
LmnI	GCTCC	4 cut(s)	995, 1537, 2080, 2981
LweI	GCATC	9 cut(s)	487, 577, 647, 736, 835, 877, 1946, 2402, 2480
MabI	ACCWGGT	1 cut(s)	2953
MaeI	CTAG	6 cut(s)	12, 699, 797, 1524, 1529, 2145
MaeII	ACGT	3 cut(s)	1999, 2500, 3007
MaeIII	GTNAC	9 cut(s)	202, 410, 609, 928, 1084, 1163, 1249, 1448, 2235
MalI	GATC	6 cut(s)	301, 826, 1314, 2415, 2889, 2894
MbiI	CCGCTC	1 cut(s)	3088
MboI	GATC	6 cut(s)	299, 824, 1312, 2413, 2887, 2892
MfeI	CAATTG	1 cut(s)	1707
MflI	RGATCY	3 cut(s)	299, 2413, 2892
MhlI	GDGCHC	2 cut(s)	1104, 2581
MlyI	GAGTC	6 cut(s)	410, 592, 617, 974, 2215, 2876
MmeI	TCCRAC	1 cut(s)	3002
MroXI	GAANNNNTTC	4 cut(s)	681, 1798, 2458, 2517
MseI	TTAA	8 cut(s)	69, 89, 357, 365, 783, 1557, 2573, 2639
MslI	CAYNNNNRTG	3 cut(s)	1077, 1152, 1512
MspA1I	CMGCKG	4 cut(s)	244, 1244, 1259, 1673
MspCI	CTTAAG	2 cut(s)	68, 356
MspI	CCGG	4 cut(s)	32, 130, 385, 2984
MspR9I	CCNGG	7 cut(s)	53, 219, 934, 1477, 2418, 2955, 2985
MunI	CAATTG	1 cut(s)	1707
Mva1269I	GAATGC	1 cut(s)	2757
MvaI	CCWGG	6 cut(s)	53, 219, 934, 1477, 2418, 2955
MvnI	CGCG	2 cut(s)	80, 2326
MwoI	GCNNNNNNNGC	7 cut(s)	62, 1376, 1385, 1409, 1943, 2072, 2141
NciI	CCSGG	1 cut(s)	2985
NcoI	CCATGG	1 cut(s)	1306
NdeI	CATATG	1 cut(s)	1194
NdeII	GATC	6 cut(s)	299, 824, 1312, 2413, 2887, 2892
NlaIV	GGNNCC	5 cut(s)	379, 910, 2076, 2374, 2529
NmeAIII	GCCGAG	1 cut(s)	2582
NmuCI	GTSAC	5 cut(s)	410, 609, 928, 1163, 1249
NspI	RCATGY	6 cut(s)	188, 1584, 1625, 2043, 2186, 2768
NspV	TTCGAA	1 cut(s)	685
PaeI	GCATGC	1 cut(s)	2043
PaeR7I	CTCGAG	1 cut(s)	372
PaqCI	CACCTGC	1 cut(s)	643
PciI	ACATGT	4 cut(s)	184, 1621, 2182, 2764
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	2757
PdmI	GAANNNNTTC	4 cut(s)	681, 1798, 2458, 2517
PfeI	GAWTC	6 cut(s)	24, 869, 1171, 1424, 1442, 2296
PflFI	GACNNNGTC	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	2416
PleI	GAGTC	6 cut(s)	409, 592, 616, 973, 2215, 2875
PpsI	GAGTC	6 cut(s)	409, 592, 616, 973, 2215, 2875
PpuMI	RGGWCCY	1 cut(s)	2527
PscI	ACATGT	4 cut(s)	184, 1621, 2182, 2764
PshBI	ATTAAT	2 cut(s)	365, 783
PsiI	TTATAA	1 cut(s)	2013
Psp124BI	GAGCTC	1 cut(s)	1104
Psp5II	RGGWCCY	1 cut(s)	2527
Psp6I	CCWGG	6 cut(s)	51, 217, 932, 1475, 2416, 2953
PspEI	GGTNACC	1 cut(s)	928
PspFI	CCCAGC	1 cut(s)	979
PspGI	CCWGG	6 cut(s)	51, 217, 932, 1475, 2416, 2953
PspN4I	GGNNCC	5 cut(s)	379, 910, 2076, 2374, 2529
PspPI	GGNCC	3 cut(s)	29, 2373, 2527
PspPPI	RGGWCCY	1 cut(s)	2527
PspXI	VCTCGAGB	1 cut(s)	372
PsrI	GAACNNNNNNTAC	2 cut(s)	2922, 2954
PstI	CTGCAG	5 cut(s)	505, 1405, 1915, 2140, 2665
PsuI	RGATCY	3 cut(s)	299, 2413, 2892
PsyI	GACNNNGTC	1 cut(s)	195
PvuII	CAGCTG	3 cut(s)	1244, 1259, 1673
RseI	CAYNNNNRTG	3 cut(s)	1077, 1152, 1512
Rsr2I	CGGWCCG	1 cut(s)	29
RsrII	CGGWCCG	1 cut(s)	29
SacI	GAGCTC	1 cut(s)	1104
SaqAI	TTAA	8 cut(s)	69, 89, 357, 365, 783, 1557, 2573, 2639
Sau3AI	GATC	6 cut(s)	299, 824, 1312, 2413, 2887, 2892
Sau96I	GGNCC	3 cut(s)	29, 2373, 2527
ScaI	AGTACT	2 cut(s)	795, 1330
SchI	GAGTC	6 cut(s)	410, 592, 617, 974, 2215, 2876
ScrFI	CCNGG	7 cut(s)	53, 219, 934, 1477, 2418, 2955, 2985
SduI	GDGCHC	2 cut(s)	1104, 2581
SexAI	ACCWGGT	1 cut(s)	2953
SfaNI	GCATC	9 cut(s)	487, 577, 647, 736, 835, 877, 1946, 2402, 2480
SfcI	CTRYAG	6 cut(s)	501, 642, 1401, 1911, 2136, 2661
Sfr274I	CTCGAG	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	685
SinI	GGWCC	2 cut(s)	29, 2527
SlaI	CTCGAG	1 cut(s)	372
SmiMI	CAYNNNNRTG	3 cut(s)	1077, 1152, 1512
SmlI	CTYRAG	5 cut(s)	68, 356, 372, 600, 2522
SmoI	CTYRAG	5 cut(s)	68, 356, 372, 600, 2522
SphI	GCATGC	1 cut(s)	2043
SsiI	CCGC	5 cut(s)	62, 244, 1227, 2988, 3088
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	6 cut(s)	12, 699, 797, 1524, 1529, 2145
SstI	GAGCTC	1 cut(s)	1104
StyD4I	CCNGG	7 cut(s)	51, 217, 932, 1475, 2416, 2953, 2983
StyI	CCWWGG	4 cut(s)	303, 858, 1306, 2070
TaaI	ACNGT	5 cut(s)	419, 877, 1233, 1600, 2250
TaiI	ACGT	3 cut(s)	2002, 2503, 3010
TaqI	TCGA	5 cut(s)	48, 373, 661, 685, 1725
TaqII	GACCGA	1 cut(s)	17
TatI	WGTACW	5 cut(s)	485, 793, 1328, 1470, 2185
TauI	GCSGC	2 cut(s)	65, 3091
TfiI	GAWTC	6 cut(s)	24, 869, 1171, 1424, 1442, 2296
Tru1I	TTAA	8 cut(s)	69, 89, 357, 365, 783, 1557, 2573, 2639
Tru9I	TTAA	8 cut(s)	69, 89, 357, 365, 783, 1557, 2573, 2639
TscAI	CASTG	7 cut(s)	424, 882, 930, 1172, 1402, 2253, 3040
TseFI	GTSAC	5 cut(s)	410, 609, 928, 1163, 1249
Tsp45I	GTSAC	5 cut(s)	410, 609, 928, 1163, 1249
TspDTI	ATGAA	9 cut(s)	1055, 1530, 1880, 1916, 2250, 2416, 2691, 2964, 3012
TspGWI	ACGGA	2 cut(s)	1836, 1945
TspRI	CASTG	7 cut(s)	424, 882, 930, 1172, 1402, 2253, 3040
Tth111I	GACNNNGTC	1 cut(s)	195
Vha464I	CTTAAG	2 cut(s)	68, 356
VpaK11BI	GGWCC	2 cut(s)	29, 2527
VspI	ATTAAT	2 cut(s)	365, 783
XagI	CCTNNNNNAGG	2 cut(s)	857, 2481
XapI	RAATTY	5 cut(s)	116, 945, 1564, 1859, 2256
XbaI	TCTAGA	1 cut(s)	1523
XceI	RCATGY	6 cut(s)	188, 1584, 1625, 2043, 2186, 2768
XhoI	CTCGAG	1 cut(s)	372
XmiI	GTMKAC	2 cut(s)	1138, 1204
XmnI	GAANNNNTTC	4 cut(s)	681, 1798, 2458, 2517
XspI	CTAG	6 cut(s)	12, 699, 797, 1524, 1529, 2145
ZrmI	AGTACT	2 cut(s)	795, 1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.