Rh2DG133300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000394
Physical Location & Seq
Reverse (-)
11240107 .. 11240439
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG133300.1

Sequence Viewer

Length: 333 bp
ATGGCCTTCCAGTGTCTGATTGCTGGGATGGATATTTCAGGTAGAGCCCGGCCACAACGAGGGCGGCTCAAGGATGTTTTGTCGAACTTGGGATTACTGAGCAGATCCGAGGAGTTGCTAAGGGTGATGGGATACTACGCTCTCAGATCTGCGGTGGTCGGATCTATGGCGAAGTCACTGAGGCACACAACATTGGCTTTCACGGCAGCGATGACGGCCCAAAGATATCAAAACGTTGTGGCCTGGGCTTCGCGTCTGAGGGTTCGACATCAAGCAGACCGGCAGCCTGTACGTGTAGCGGCGACCGTGATCGGTGTAGGAGAAGGACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.11

Weight (kDa)

11.58

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 253
AciI CCGC 3 cut(s) 64, 152, 299
AclI AACGTT 1 cut(s) 234
AclWI GGATC 2 cut(s) 99, 169
AcoI YGGCCR 1 cut(s) 50
AfaI GTAC 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 59
AflIII ACRYGT 1 cut(s) 292
AjnI CCWGG 1 cut(s) 242
AlwI GGATC 2 cut(s) 99, 169
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 4 cut(s) 3, 50, 216, 240
ApeKI GCWGC 2 cut(s) 206, 283
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 136
BanII GRGCYC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 218, 295
BccI CCATC 2 cut(s) 22, 121
BceAI ACGGC 2 cut(s) 219, 231
BciT130I CCWGG 1 cut(s) 244
BciVI GTATCC 1 cut(s) 125
BcnI CCSGG 1 cut(s) 49
BfuI GTATCC 1 cut(s) 125
BglII AGATCT 1 cut(s) 146
BisI GCNGC 4 cut(s) 65, 207, 284, 300
BlsI GCNGC 4 cut(s) 66, 208, 285, 301
Bme1390I CCNGG 2 cut(s) 49, 244
BmgT120I GGNCC 1 cut(s) 217
BmrFI CCNGG 2 cut(s) 49, 244
BplI GAGNNNNNCTC 2 cut(s) 51, 83
Bpu10I CCTNAGC 1 cut(s) 119
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 108, 243
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 10
BseBI CCWGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 108, 243
BseGI GGATG 2 cut(s) 33, 79
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 4 cut(s) 89, 157, 170, 248
BseNI ACTGG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 2 cut(s) 218, 295
BseYI CCCAGC 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 253
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 4 cut(s) 5, 52, 218, 242
BsiEI CGRYCG 1 cut(s) 306
BsiSI CCGG 2 cut(s) 49, 280
BslI CCNNNNNNNGG 1 cut(s) 59
BsnI GGCC 4 cut(s) 5, 52, 218, 242
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 4 cut(s) 104, 146, 161, 309
BspACI CCGC 3 cut(s) 64, 152, 299
BspANI GGCC 4 cut(s) 5, 52, 218, 242
BspCNI CTCAG 4 cut(s) 90, 156, 171, 249
BspFNI CGCG 1 cut(s) 253
BspPI GGATC 2 cut(s) 99, 169
BsrFI RCCGGY 1 cut(s) 279
BsrI ACTGG 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 108, 243
BssMI GATC 4 cut(s) 104, 146, 161, 309
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 307, 330
BstBAI YACGTR 1 cut(s) 293
BstDEI CTNAG 5 cut(s) 98, 119, 143, 179, 257
BstF5I GGATG 2 cut(s) 33, 79
BstFNI CGCG 1 cut(s) 253
BstKTI GATC 4 cut(s) 107, 149, 164, 312
BstMBI GATC 4 cut(s) 104, 146, 161, 309
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 2 cut(s) 203, 215
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 47, 242
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 218, 295
BstX2I RGATCY 3 cut(s) 104, 146, 161
BstYI RGATCY 3 cut(s) 104, 146, 161
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 4 cut(s) 5, 52, 218, 242
BtgZI GCGATG 1 cut(s) 224
BtsCI GGATG 2 cut(s) 33, 79
BtsIMutI CAGTG 2 cut(s) 17, 176
CaiI CAGNNNCTG 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 217
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 290
CviJI RGCY 9 cut(s) 5, 47, 52, 67, 197, 218, 242, 248, 286
CviKI_1 RGCY 9 cut(s) 5, 47, 52, 67, 197, 218, 242, 248, 286
CviQI GTAC 1 cut(s) 290
DdeI CTNAG 5 cut(s) 98, 119, 143, 179, 257
DpnI GATC 4 cut(s) 106, 148, 163, 311
DpnII GATC 4 cut(s) 104, 146, 161, 309
EaeI YGGCCR 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 242
EcoRV GATATC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 49
FaiI YATR 1 cut(s) 167
Fnu4HI GCNGC 4 cut(s) 65, 207, 284, 300
FokI GGATG 2 cut(s) 40, 86
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 4 cut(s) 65, 207, 284, 300
GluI GCNGC 4 cut(s) 65, 207, 284, 300
GsaI CCCAGC 1 cut(s) 27
HaeIII GGCC 4 cut(s) 5, 52, 218, 242
HapII CCGG 2 cut(s) 49, 280
HgaI GACGC 1 cut(s) 242
HpaII CCGG 2 cut(s) 49, 280
HphI GGTGA 1 cut(s) 136
Hpy188I TCNGA 5 cut(s) 18, 109, 146, 161, 258
HpyAV CCTTC 2 cut(s) 16, 317
HpyCH4III ACNGT 2 cut(s) 307, 330
HpyCH4IV ACGT 2 cut(s) 234, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 215
HpyF3I CTNAG 5 cut(s) 98, 119, 143, 179, 257
HpySE526I ACGT 2 cut(s) 234, 292
Kzo9I GATC 4 cut(s) 104, 146, 161, 309
LpnPI CCDG 8 cut(s) 9, 23, 24, 62, 229, 256, 293, 300
Lsp1109I GCAGC 2 cut(s) 218, 295
MaeII ACGT 2 cut(s) 234, 292
MaeIII GTNAC 1 cut(s) 174
MalI GATC 4 cut(s) 106, 148, 163, 311
MboI GATC 4 cut(s) 104, 146, 161, 309
MflI RGATCY 3 cut(s) 104, 146, 161
MhlI GDGCHC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 4 cut(s) 53, 103, 174, 252
MspI CCGG 2 cut(s) 49, 280
MspR9I CCNGG 2 cut(s) 49, 244
MvaI CCWGG 1 cut(s) 244
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 203, 215
NciI CCSGG 1 cut(s) 49
NdeII GATC 4 cut(s) 104, 146, 161, 309
NmuCI GTSAC 1 cut(s) 174
PkrI GCNGC 4 cut(s) 66, 208, 285, 301
Ppu21I YACGTR 1 cut(s) 293
Psp1406I AACGTT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 242
PspFI CCCAGC 1 cut(s) 23
PspGI CCWGG 1 cut(s) 242
PspPI GGNCC 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 3 cut(s) 104, 146, 161
RsaI GTAC 1 cut(s) 291
RsaNI GTAC 1 cut(s) 290
SatI GCNGC 4 cut(s) 65, 207, 284, 300
Sau3AI GATC 4 cut(s) 104, 146, 161, 309
Sau96I GGNCC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 49, 244
SduI GDGCHC 1 cut(s) 49
SetI ASST 3 cut(s) 43, 237, 295
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SsiI CCGC 3 cut(s) 64, 152, 299
StyD4I CCNGG 2 cut(s) 47, 242
TaaI ACNGT 2 cut(s) 307, 330
TaiI ACGT 2 cut(s) 237, 295
TaqI TCGA 2 cut(s) 83, 265
TauI GCSGC 2 cut(s) 67, 302
TscAI CASTG 2 cut(s) 17, 183
TseFI GTSAC 1 cut(s) 174
TseI GCWGC 2 cut(s) 206, 283
Tsp45I GTSAC 1 cut(s) 174
TspRI CASTG 2 cut(s) 17, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.