Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

1985332 .. 1986654

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28456

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCCTCTGGTGGTATTGGAACATTTGCCATTCAGATTGCTAGACACCAAGGTGTAACTGTATTTGTCACAGCAGGTGACGGGGCAAAATTAAAGGCCTGTAGGGATCTTGGAGCTGAATTATGCATTAATCATAACACAGAGGACTTTGCTGAACTGGTAATGCAGAAGACAGAAGGAATAGGTTTGTTCTCTTGTATTATCACTCCATTGATAACCTCAAGAATGAGTACTGTAACTTTCAATGTTAAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

85

Amino Acids

9.0

Weight (kDa)

6.7

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	5 - 62	2.4e-12	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	65
AclWI	GGATC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	244
AleI	CACNNNNGTG	1 cut(s)	51
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	3, 96
AseI	ATTAAT	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	65
BmcAI	AGTACT	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	5, 98
BsnI	GGCC	2 cut(s)	5, 98
Bsp143I	GATC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	5, 98
BspMI	ACCTGC	1 cut(s)	65
BspPI	GGATC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	2 cut(s)	61, 235
BstDEI	CTNAG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	5, 98
BveI	ACCTGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	231
CviJI	RGCY	3 cut(s)	5, 98, 116
CviKI_1	RGCY	3 cut(s)	5, 98, 116
CviQI	GTAC	1 cut(s)	231
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	49
Eco147I	AGGCCT	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	49
FaiI	YATR	2 cut(s)	124, 135
FspBI	CTAG	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	5, 98
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	2 cut(s)	61, 235
HpyCH4V	TGCA	2 cut(s)	126, 166
HpyF3I	CTNAG	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	3 cut(s)	60, 112, 143
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	4 cut(s)	55, 67, 77, 235
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	181
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	2 cut(s)	89, 119
MnlI	CCTC	3 cut(s)	16, 136, 229
Mph1103I	ATGCAT	1 cut(s)	128
MseI	TTAA	3 cut(s)	92, 129, 249
MslI	CAYNNNNRTG	1 cut(s)	51
NdeII	GATC	1 cut(s)	106
NmuCI	GTSAC	2 cut(s)	67, 77
NsiI	ATGCAT	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	51
PaqCI	CACCTGC	1 cut(s)	65
PceI	AGGCCT	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	1 cut(s)	232
RsaNI	GTAC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	3 cut(s)	92, 129, 249
Sau3AI	GATC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	232
SetI	ASST	5 cut(s)	55, 79, 118, 187, 221
SfcI	CTRYAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	2 cut(s)	89, 119
SseBI	AGGCCT	1 cut(s)	98
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	61, 235
TasI	AATT	2 cut(s)	89, 119
TatI	WGTACW	1 cut(s)	230
Tru1I	TTAA	3 cut(s)	92, 129, 249
Tru9I	TTAA	3 cut(s)	92, 129, 249
TseFI	GTSAC	2 cut(s)	67, 77
Tsp45I	GTSAC	2 cut(s)	67, 77
VspI	ATTAAT	1 cut(s)	129
XspI	CTAG	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.