Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

58332427 .. 58335422

Gene Structure 2996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0424000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGAAAACCCAGGAAGTTGCAGTGACCCAGATGAGGACATTAGTTCAGAAGCTTGGGTCTTCCACTGAGAACTATGGAGACCCAACACTGATGAGGTTCTTGATTGCAAGATCAATGGACCCAGAGAAGGCAGCAAAGATGTTTGTGCAGTGGCGGAAATGGAGGGCTTCATTTGTCCCAAATGGGTTCATTTCGGAATCCGAAGTTAAGGATCAATTGGAAGACAGAAAGATTTTCTTGCAGGATTTATCTAATGGATGTCCTGTGATGATTATTAAAGCAAGCAAGCATTATCCTGCCAAGGACCAACTCCAATACAAGAAATTTGTGGTTCATCTGCTTGACAAAACTATTGCAAGCTCTTTCAGAGGAAGAGAAATCGGAAACGAAAGGTTGATTGGCATTCTTGATTTGCAACAAATTTCCTATAAAAATGTTGATGCACGTGGATTAATCACTGGATTTCAATTTCTACAGGCTTACTACCCTGAAAGATTAGGAAAGCTCTTCATTCTAAACATGCCACGCTTTTTTGTAAGTGTCTGGAGGATGGTTTCTCGCTTCCTTGAGAAGGCAACTGCAGAAAAGGTTGTAATTGTGACCAATGAAGATGAAAAAAGAGACTTCATAAAGGAAATAGGTGAGGAGATCTTGCCGGAAGAGTATGGTGGTCGAGCAAAGCTTGTCGCTCTTCAAGACGTTGAACTGGCCCCACTAGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

242

Amino Acids

27.98

Weight (kDa)

8.49

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	85 - 225	1.1e-26	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	87 - 218	1.9e-06	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	326, 423
AcvI	CACGTG	1 cut(s)	449
AfiI	CCNNNNNNNGG	4 cut(s)	36, 130, 574, 721
AgsI	TTSAA	3 cut(s)	470, 698, 707
AjnI	CCWGG	1 cut(s)	12
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	4 cut(s)	55, 363, 508, 685
AluI	AGCT	4 cut(s)	55, 363, 508, 685
Alw26I	GTCTC	2 cut(s)	75, 618
AlwI	GGATC	1 cut(s)	222
AoxI	GGCC	1 cut(s)	711
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	326, 423
AseI	ATTAAT	1 cut(s)	455
AspS9I	GGNCC	3 cut(s)	121, 307, 712
AsuHPI	GGTGA	1 cut(s)	656
AvaII	GGWCC	2 cut(s)	121, 307
BbrPI	CACGTG	1 cut(s)	449
BbsI	GAAGAC	2 cut(s)	54, 231
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	75, 618
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	2 cut(s)	476, 582
BglII	AGATCT	1 cut(s)	651
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	121, 307
BmgT120I	GGNCC	3 cut(s)	121, 307, 712
BmiI	GGNNCC	2 cut(s)	123, 714
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	2 cut(s)	54, 231
BpmI	CTGGAG	1 cut(s)	568
BpuEI	CTTGAG	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	12, 303
Bsc4I	CCNNNNNNNGG	4 cut(s)	36, 130, 574, 721
Bse1I	ACTGG	2 cut(s)	466, 714
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	12, 303
BseGI	GGATG	2 cut(s)	266, 558
BseLI	CCNNNNNNNGG	4 cut(s)	36, 130, 574, 721
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	466, 714
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	1 cut(s)	146
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	4 cut(s)	36, 130, 574, 721
BsmAI	GTCTC	2 cut(s)	75, 618
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	713
Bso31I	GGTCTC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	113, 214, 651
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	713
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	123, 714
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	1 cut(s)	222
BspQI	GCTCTTC	2 cut(s)	515, 699
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	2 cut(s)	466, 714
BssECI	CCNNGG	2 cut(s)	12, 303
BssMI	GATC	3 cut(s)	113, 214, 651
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	14
Bst6I	CTCTTC	4 cut(s)	370, 515, 657, 699
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	3 cut(s)	286, 290, 361
BstDEI	CTNAG	1 cut(s)	69
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstF5I	GGATG	2 cut(s)	266, 558
BstKTI	GATC	3 cut(s)	116, 217, 654
BstMAI	GTCTC	2 cut(s)	75, 618
BstMBI	GATC	3 cut(s)	113, 214, 651
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	2 cut(s)	476, 582
BstV1I	GCAGC	1 cut(s)	146
BstV2I	GAAGAC	2 cut(s)	54, 231
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuRI	GGCC	1 cut(s)	713
BtsCI	GGATG	2 cut(s)	266, 558
BtsI	GCAGTG	2 cut(s)	30, 158
BtsIMutI	CAGTG	5 cut(s)	30, 66, 89, 158, 459
Cac8I	GCNNGC	3 cut(s)	286, 290, 361
Cfr13I	GGNCC	3 cut(s)	121, 307, 712
CviAII	CATG	1 cut(s)	523
CviJI	RGCY	7 cut(s)	55, 170, 363, 482, 508, 685, 713
CviKI_1	RGCY	7 cut(s)	55, 170, 363, 482, 508, 685, 713
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	3 cut(s)	115, 216, 653
DpnII	GATC	3 cut(s)	113, 214, 651
Eam1104I	CTCTTC	4 cut(s)	370, 515, 657, 699
EarI	CTCTTC	4 cut(s)	370, 515, 657, 699
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	121, 307
Eco72I	CACGTG	1 cut(s)	449
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	526
FaiI	YATR	5 cut(s)	78, 432, 524, 632, 669
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	1 cut(s)	522
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	2 cut(s)	273, 565
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	1 cut(s)	713
HapII	CCGG	1 cut(s)	659
Hin1II	CATG	1 cut(s)	526
HindIII	AAGCTT	2 cut(s)	53, 683
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	1 cut(s)	656
Hpy188I	TCNGA	5 cut(s)	51, 199, 205, 371, 386
Hpy188III	TCNNGA	4 cut(s)	103, 410, 547, 698
HpyAV	CCTTC	2 cut(s)	124, 568
HpyCH4IV	ACGT	2 cut(s)	448, 702
HpyCH4V	TGCA	8 cut(s)	23, 110, 151, 244, 359, 418, 446, 584
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	448, 702
Hsp92II	CATG	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	113, 214, 651
LguI	GCTCTTC	2 cut(s)	515, 699
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	719
MaeII	ACGT	2 cut(s)	448, 702
MaeIII	GTNAC	2 cut(s)	25, 601
MalI	GATC	3 cut(s)	115, 216, 653
MboI	GATC	3 cut(s)	113, 214, 651
MboII	GAAGA	7 cut(s)	54, 236, 387, 502, 623, 674, 686
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	1 cut(s)	651
MluCI	AATT	5 cut(s)	218, 326, 423, 470, 597
MnlI	CCTC	7 cut(s)	30, 90, 159, 365, 543, 640, 715
MseI	TTAA	3 cut(s)	210, 279, 455
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	14
MunI	CAATTG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	14
NdeII	GATC	3 cut(s)	113, 214, 651
NlaIII	CATG	1 cut(s)	526
NlaIV	GGNNCC	2 cut(s)	123, 714
NmuCI	GTSAC	2 cut(s)	25, 601
NspI	RCATGY	1 cut(s)	526
PciSI	GCTCTTC	2 cut(s)	515, 699
PctI	GAATGC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	136
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
Ppu21I	YACGTR	1 cut(s)	449
PshBI	ATTAAT	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	12
PspCI	CACGTG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	123, 714
PspPI	GGNCC	3 cut(s)	121, 307, 712
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	651
SapI	GCTCTTC	2 cut(s)	515, 699
SaqAI	TTAA	3 cut(s)	210, 279, 455
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	3 cut(s)	113, 214, 651
Sau96I	GGNCC	3 cut(s)	121, 307, 712
ScrFI	CCNGG	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	2 cut(s)	476, 582
SinI	GGWCC	2 cut(s)	121, 307
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	5 cut(s)	218, 326, 423, 470, 597
SsiI	CCGC	1 cut(s)	157
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	303
TaiI	ACGT	2 cut(s)	451, 705
TaqI	TCGA	1 cut(s)	676
TasI	AATT	5 cut(s)	218, 326, 423, 470, 597
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	3 cut(s)	210, 279, 455
Tru9I	TTAA	3 cut(s)	210, 279, 455
TscAI	CASTG	5 cut(s)	30, 73, 96, 158, 466
TseFI	GTSAC	2 cut(s)	25, 601
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	2 cut(s)	25, 601
TspDTI	ATGAA	7 cut(s)	162, 181, 326, 502, 619, 624, 630
TspRI	CASTG	5 cut(s)	30, 73, 96, 158, 466
VpaK11BI	GGWCC	2 cut(s)	121, 307
VspI	ATTAAT	1 cut(s)	455
XagI	CCTNNNNNAGG	1 cut(s)	572
XapI	RAATTY	2 cut(s)	326, 423
XceI	RCATGY	1 cut(s)	526
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.