Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Forward (+)

3203665 .. 3204227

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTTTTAGTACATACTGGGCTCTTACTGGTATTTGCTGGTTTAGTTATTTTCATGACTATCTCAGGCTTTGGTACCGGCGAGAGAGTTGGTACATTTATTGACGCCTTTTATGTGGCTTACTGTACGGTCTTCTCAGTTGGTTTCGGCGATATTTCTCCTCTGAAGTCTCTTACTCGGATTCCTTGTGATGTGCTGGGATTGGTGGTTGGACCTATTGTAGTGATGGTACTCACTCATTTTTTGGGTCGGTTAGCATGCGAGTTGGAGCGGCGGATTTCATCTCGCTTTCGGATGAGATATCGAGTGTATTCAGCTCTTGGTATGATCTTGCTGACTCTATTTTTGGGGATGGCCGACATTTATATCTTTGAGTGGCTGCACCTAGCTGGTGGATCTCCATCTCCATCTCCTTCCACTATGTTACCTACTGATGCATACGCATGGGTCCTCTTTGTTGACATATTCCAAATTAGGCATATCAACGAGCCAAATTCACAACATAACAGTAACTTTTATGAAGAATGTCAGTTATTTCGGACGTCCAGTCATTTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

186

Amino Acids

20.93

Weight (kDa)

6.57

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans_2	PF07885	9 - 82	6.6e-09	Ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	545
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	271
AciI	CCGC	2 cut(s)	271, 274
AclWI	GGATC	1 cut(s)	403
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	185
AcyI	GRCGYC	2 cut(s)	105, 542
AfaI	GTAC	5 cut(s)	12, 76, 94, 127, 231
AhdI	GACNNNNNGTC	1 cut(s)	546
AluBI	AGCT	2 cut(s)	317, 389
AluI	AGCT	2 cut(s)	317, 389
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	403
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	379
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	328, 360
Asp718I	GGTACC	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	212, 448
AvaII	GGWCC	2 cut(s)	212, 448
BanI	GGYRCC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	4 cut(s)	220, 346, 409, 415
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	386
BisI	GCNGC	2 cut(s)	272, 380
BlsI	GCNGC	2 cut(s)	273, 381
Bme18I	GGWCC	2 cut(s)	212, 448
BmeRI	GACNNNNNGTC	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	212, 448
BmiI	GGNNCC	2 cut(s)	76, 449
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	424
BmuI	ACTGGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	400
BsaHI	GRCGYC	2 cut(s)	105, 542
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	3 cut(s)	22, 33, 546
Bse8I	GATNNNNATC	1 cut(s)	400
BseGI	GGATG	2 cut(s)	300, 357
BseJI	GATNNNNATC	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	78, 150
BseNI	ACTGG	3 cut(s)	22, 33, 546
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	366
BseYI	CCCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	327, 395
BspACI	CCGC	2 cut(s)	271, 274
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	2 cut(s)	77, 149
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	76, 449
BspPI	GGATC	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	74
BsrBI	CCGCTC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	3 cut(s)	22, 33, 546
BssAI	RCCGGY	1 cut(s)	77
BssMI	GATC	2 cut(s)	327, 395
BssNI	GRCGYC	2 cut(s)	105, 542
Bst4CI	ACNGT	3 cut(s)	125, 130, 509
BstACI	GRCGYC	2 cut(s)	105, 542
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	64, 136
BstF5I	GGATG	2 cut(s)	300, 357
BstKTI	GATC	2 cut(s)	330, 398
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	327, 395
BstNSI	RCATGY	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	300, 357
Cac8I	GCNNGC	1 cut(s)	259
CciI	TCATGA	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	212, 448
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	5 cut(s)	11, 75, 93, 126, 230
CviAII	CATG	3 cut(s)	55, 258, 444
CviJI	RGCY	8 cut(s)	22, 69, 119, 317, 356, 379, 389, 490
CviKI_1	RGCY	8 cut(s)	22, 69, 119, 317, 356, 379, 389, 490
CviQI	GTAC	5 cut(s)	11, 75, 93, 126, 230
DdeI	CTNAG	2 cut(s)	64, 136
DpnI	GATC	2 cut(s)	329, 397
DpnII	GATC	2 cut(s)	327, 395
DriI	GACNNNNNGTC	1 cut(s)	546
EaeI	YGGCCR	1 cut(s)	354
Eam1105I	GACNNNNNGTC	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	24
Eco32I	GATATC	1 cut(s)	302
Eco47I	GGWCC	2 cut(s)	212, 448
Eco57I	CTGAAG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	3 cut(s)	58, 261, 447
FatI	CATG	3 cut(s)	54, 257, 443
Fnu4HI	GCNGC	2 cut(s)	272, 380
FokI	GGATG	2 cut(s)	307, 364
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	272, 380
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	2 cut(s)	272, 380
GsaI	CCCAGC	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	113
Hin1I	GRCGYC	2 cut(s)	105, 542
Hin1II	CATG	3 cut(s)	58, 261, 447
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	2 cut(s)	181, 337
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	4 cut(s)	165, 180, 294, 540
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	423
HpyCH4III	ACNGT	3 cut(s)	125, 130, 509
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	2 cut(s)	382, 437
HpyF3I	CTNAG	2 cut(s)	64, 136
HpySE526I	ACGT	1 cut(s)	542
Hsp92I	GRCGYC	2 cut(s)	105, 542
Hsp92II	CATG	3 cut(s)	58, 261, 447
KpnI	GGTACC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	327, 395
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	7 cut(s)	3, 14, 24, 51, 91, 182, 375
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	2 cut(s)	423, 509
MalI	GATC	2 cut(s)	329, 397
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	2 cut(s)	327, 395
MboII	GAAGA	2 cut(s)	124, 533
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	2 cut(s)	471, 493
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	2 cut(s)	190, 246
MnlI	CCTC	2 cut(s)	171, 461
Mph1103I	ATGCAT	1 cut(s)	439
MslI	CAYNNNNRTG	1 cut(s)	442
MspI	CCGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	327, 395
NlaIII	CATG	3 cut(s)	58, 261, 447
NlaIV	GGNNCC	2 cut(s)	76, 449
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	261
PaeI	GCATGC	1 cut(s)	261
PagI	TCATGA	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	273, 381
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	76, 449
PspPI	GGNCC	2 cut(s)	212, 448
PspPPI	RGGWCCY	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	395
RsaI	GTAC	5 cut(s)	12, 76, 94, 127, 231
RsaNI	GTAC	5 cut(s)	11, 75, 93, 126, 230
RseI	CAYNNNNRTG	1 cut(s)	442
SatI	GCNGC	2 cut(s)	272, 380
Sau3AI	GATC	2 cut(s)	327, 395
Sau96I	GGNCC	2 cut(s)	212, 448
SchI	GAGTC	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	6 cut(s)	217, 319, 387, 391, 430, 545
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	2 cut(s)	212, 448
SmiMI	CAYNNNNRTG	1 cut(s)	442
SphI	GCATGC	1 cut(s)	261
Sse9I	AATT	2 cut(s)	471, 493
SsiI	CCGC	2 cut(s)	271, 274
SspMI	CTAG	1 cut(s)	386
TaaI	ACNGT	3 cut(s)	125, 130, 509
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	471, 493
TatI	WGTACW	1 cut(s)	10
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	379
TspDTI	ATGAA	3 cut(s)	43, 270, 534
VpaK11BI	GGWCC	2 cut(s)	212, 448
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	1 cut(s)	261
XspI	CTAG	1 cut(s)	386
ZraI	GACGTC	1 cut(s)	543
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.