Rh5BG129900

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000394
Physical Location & Seq
Forward (+)
12774507 .. 12775882
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG129900.1

Sequence Viewer

Length: 399 bp
ATGGACACGCAGCCTCTGTTGATTCATAGGGCCTCTGGTGGTATTGGAACATTTGCCATTCAGATTGCTAGACACCAAGGGGTAACTGTATTTGTCACAGCAGGTAACGAGGAAAAATTAAAGGCCTGTAGGGATCTTGGAGCTGAATTATGCATCAATCATAACACAGAGGACTTTGCTAAACTGGTAATGGAGAAGACAGAAGGAAGAGGTGTGAATGTCATCTTGGATGGCTTTGGGCAGAAGTATCTTCTCGAAAACTATTCTTGCTTAAGTTCCGGGGGTAGGCTGGTCTCAATTGGTCCTAGCTGTAATATGTCAGGACAAGATTCTCACAAGGAAAATTCAGGGCGCCACATTGTCAATGGTACTAAACTGGAGCGTTTTGTTGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

132

Amino Acids

14.26

Weight (kDa)

6.95

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 14 - 102 1.1e-23 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 46 - 115 2.4e-08 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 351
AclWI GGATC 1 cut(s) 141
AcsI RAATTY 1 cut(s) 343
AcyI GRCGYC 1 cut(s) 352
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 285
AflII CTTAAG 1 cut(s) 271
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
AluBI AGCT 2 cut(s) 143, 309
AluI AGCT 2 cut(s) 143, 309
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 2 cut(s) 30, 123
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 343
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 30, 302
AsuC2I CCSGG 1 cut(s) 280
AvaII GGWCC 1 cut(s) 302
BanI GGYRCC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 2 cut(s) 69, 306
BfmI CTRYAG 1 cut(s) 127
BfoI RGCGCY 1 cut(s) 355
BfrI CTTAAG 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 92
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 30, 302
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 298
BsaJI CCNNGG 2 cut(s) 76, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 189, 381
BseDI CCNNGG 2 cut(s) 76, 279
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 189, 381
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 2 cut(s) 32, 125
BshNI GGYRCC 1 cut(s) 351
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 298
BsnI GGCC 2 cut(s) 32, 125
Bso31I GGTCTC 1 cut(s) 298
Bsp143I GATC 1 cut(s) 133
BspANI GGCC 2 cut(s) 32, 125
BspLI GGNNCC 1 cut(s) 353
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 351
BspTI CTTAAG 1 cut(s) 271
BspTNI GGTCTC 1 cut(s) 298
BsrI ACTGG 2 cut(s) 189, 381
BssECI CCNNGG 2 cut(s) 76, 279
BssMI GATC 1 cut(s) 133
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 352
BstAFI CTTAAG 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 2 cut(s) 32, 125
BtsCI GGATG 1 cut(s) 235
BveI ACCTGC 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 30, 302
Csp6I GTAC 1 cut(s) 369
CviJI RGCY 7 cut(s) 13, 32, 125, 143, 234, 289, 309
CviKI_1 RGCY 7 cut(s) 13, 32, 125, 143, 234, 289, 309
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 1 cut(s) 396
DinI GGCGCC 1 cut(s) 353
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 353
EheI GGCGCC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 76
FaiI YATR 4 cut(s) 27, 151, 162, 317
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 2 cut(s) 69, 306
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 398
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 2 cut(s) 32, 125
HapII CCGG 1 cut(s) 279
HhaI GCGC 1 cut(s) 354
Hin1I GRCGYC 1 cut(s) 352
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 2 cut(s) 22, 329
HpaII CCGG 1 cut(s) 279
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 254, 321
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 153
HpyF3I CTNAG 1 cut(s) 396
Hsp92I GRCGYC 1 cut(s) 352
HspAI GCGC 1 cut(s) 352
KasI GGCGCC 1 cut(s) 351
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 2 cut(s) 140, 379
LpnPI CCDG 9 cut(s) 21, 87, 139, 170, 275, 292, 306, 333, 362
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 162
MaeI CTAG 2 cut(s) 69, 306
MaeIII GTNAC 3 cut(s) 82, 94, 104
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 3 cut(s) 208, 219, 242
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 1 cut(s) 133
MluCI AATT 4 cut(s) 116, 146, 297, 343
Mly113I GGCGCC 1 cut(s) 352
MnlI CCTC 5 cut(s) 24, 43, 103, 163, 203
Mph1103I ATGCAT 1 cut(s) 155
MseI TTAA 2 cut(s) 119, 272
MspCI CTTAAG 1 cut(s) 271
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 280
MunI CAATTG 1 cut(s) 297
NarI GGCGCC 1 cut(s) 352
NciI CCSGG 1 cut(s) 280
NdeII GATC 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 155
PceI AGGCCT 1 cut(s) 125
PfeI GAWTC 2 cut(s) 22, 329
PkrI GCNGC 1 cut(s) 12
PluTI GGCGCC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 2 cut(s) 30, 302
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 119, 272
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 2 cut(s) 30, 302
ScrFI CCNGG 1 cut(s) 280
SetI ASST 4 cut(s) 106, 145, 214, 311
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 127
SfoI GGCGCC 1 cut(s) 353
SinI GGWCC 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 4 cut(s) 116, 146, 297, 343
SseBI AGGCCT 1 cut(s) 125
SspDI GGCGCC 1 cut(s) 351
SspMI CTAG 2 cut(s) 69, 306
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 255
TasI AATT 4 cut(s) 116, 146, 297, 343
TfiI GAWTC 2 cut(s) 22, 329
Tru1I TTAA 2 cut(s) 119, 272
Tru9I TTAA 2 cut(s) 119, 272
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 14
Vha464I CTTAAG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 1 cut(s) 343
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XspI CTAG 2 cut(s) 69, 306
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.