FvH4_3g04340

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
2483914 .. 2485758
1845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04340.t1

Sequence Viewer

Length: 978 bp
ATGAAGGCGGTAGTGGTAACAGCCCCCGGCGGACCGGAGGTCCTCCAAGTACAAGAAGTAGAAGACCCACAAATCAAATCCGACGAGGTCCTCATCAAAGTGGAGGCCACCGCCCTCAACCGAGCCGACACTTTCCAGAGGAAGGGACTTTACCCGCCTCCTCCGGGGTCCAGTCAGTACCTCGGCCTCGAATGTTCTGGAACCATCGAGGCCGTTGGAGAACACGTGTCACGCTGGAAAGTCGGGGATCAGGTGTGTGCTTTACTTAGCGGAGGAGGGTATGCCGAGAAGGTGGCTGTTCCGGAGGGGCAGGTTCTTCCTGTTCCGCCTGGTATTTCTTTGAAGGATGCTGCCAGCTTTCCGGAGGTGGCGTGCACCGTTTGGTCCACTATCTTTATGATGAGCCGGCTATCTTCGGGTGAAACACTCTTGGTTCATGGGGGTTCGAGTGGAATCGGCACGTTTGCAATTCAGATTGCTAAATACCGGGGAGTGAGGGTATTTGTCACAGCAGGTAGTGAGGAGAAGCTAGCGGCTTGTAAGGAGCTTGGGGCTGATGTAGGTATCAATTACAAGACGGAGGATTTTGTTGCACGTGTGAAGGAAGAGACCAGTGGCAAAGGTGTAGATGTCATCTTGGATAGCATTGGGCAAGCCTATTTTAAACGTAACCTCGACAGCTTAGCTTTTGATGGGAGGCTTTTTGTTATTGGGACCTTGAGTGGCTCTGTCACAGAGCTAGATCTTCGTGTGGTGCTTTCAAAGCGCCTCACCATCCAAGCGGCTGGTTTACGCTACAGAAGTCCAGAAAACAAAGCGGTAATTGTTAGAGAGGTGGAGGAGAATGTGTGGCCTGCAATTGTGGCTGGCATGGTGAAAACTGTTGTCTACAAGCGTTTCCCATTATCTAAAGCCACTGAGGCTCACCAGCTATTGGAAACTAGCCAGCATATTGGAAAGATACTACTCTTCCCATGA

Protein Analysis

326

Amino Acids

34.92

Weight (kDa)

6.17

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 27 - 109 9.5e-18 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 151 - 266 2.5e-31 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 183 - 323 4.3e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 301, 503
AccB7I CCANNNNNTGG 1 cut(s) 934
AccI GTMKAC 1 cut(s) 888
AccIII TCCGGA 2 cut(s) 301, 361
AciI CCGC 9 cut(s) 8, 30, 111, 155, 270, 326, 533, 782, 818
AclWI GGATC 1 cut(s) 255
AcvI CACGTG 2 cut(s) 226, 596
AfaI GTAC 2 cut(s) 51, 179
AfiI CCNNNNNNNGG 3 cut(s) 142, 164, 934
AflIII ACRYGT 3 cut(s) 223, 225, 595
AgsI TTSAA 2 cut(s) 343, 762
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 7 cut(s) 357, 529, 547, 681, 686, 739, 931
AluI AGCT 7 cut(s) 357, 529, 547, 681, 686, 739, 931
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 602
Alw44I GTGCAC 1 cut(s) 373
AlwI GGATC 1 cut(s) 255
Aor13HI TCCGGA 2 cut(s) 301, 361
AoxI GGCC 4 cut(s) 105, 184, 210, 851
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 768
AspS9I GGNCC 6 cut(s) 32, 40, 88, 168, 384, 714
AsuC2I CCSGG 3 cut(s) 27, 165, 488
AsuHPI GGTGA 4 cut(s) 431, 763, 886, 917
AsuNHI GCTAGC 1 cut(s) 529
AvaII GGWCC 6 cut(s) 32, 40, 88, 168, 384, 714
BaeGI GKGCMC 1 cut(s) 377
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbrPI CACGTG 2 cut(s) 226, 596
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 337
BccI CCATC 3 cut(s) 212, 686, 782
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 3 cut(s) 27, 165, 488
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 3 cut(s) 530, 740, 942
BfmI CTRYAG 1 cut(s) 796
BfoI RGCGCY 1 cut(s) 769
BfuAI ACCTGC 2 cut(s) 301, 503
BglI GCCNNNNNGGC 1 cut(s) 920
BglII AGATCT 1 cut(s) 742
BisI GCNGC 3 cut(s) 351, 534, 783
BlpI GCTNAGC 1 cut(s) 682
BlsI GCNGC 3 cut(s) 352, 535, 784
Bme1390I CCNGG 4 cut(s) 27, 165, 330, 488
Bme18I GGWCC 6 cut(s) 32, 40, 88, 168, 384, 714
BmeRI GACNNNNNGTC 1 cut(s) 38
BmgT120I GGNCC 6 cut(s) 32, 40, 88, 168, 384, 714
BmiI GGNNCC 3 cut(s) 169, 202, 715
BmrFI CCNGG 4 cut(s) 27, 165, 330, 488
BmsI GCATC 1 cut(s) 337
BmtI GCTAGC 1 cut(s) 533
BpiI GAAGAC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 682
BpuEI CTTGAG 1 cut(s) 739
BpuMI CCSGG 3 cut(s) 27, 165, 488
BsaAI YACGTR 2 cut(s) 226, 596
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 4 cut(s) 25, 164, 181, 487
BsaWI WCCGGW 3 cut(s) 34, 301, 361
BsaXI ACNNNNNCTCC 8 cut(s) 210, 240, 356, 386, 483, 513, 833, 863
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 164, 934
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 2 cut(s) 171, 612
BseAI TCCGGA 2 cut(s) 301, 361
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 4 cut(s) 25, 164, 181, 487
BseGI GGATG 2 cut(s) 352, 774
BseLI CCNNNNNNNGG 3 cut(s) 142, 164, 934
BseMII CTCAG 1 cut(s) 909
BseNI ACTGG 2 cut(s) 171, 612
BseRI GAGGAG 4 cut(s) 150, 288, 536, 854
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 1 cut(s) 337
BshFI GGCC 4 cut(s) 107, 186, 212, 853
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 7 cut(s) 27, 35, 164, 302, 362, 406, 487
BslFI GGGAC 2 cut(s) 159, 727
BslI CCNNNNNNNGG 3 cut(s) 142, 164, 934
BsmAI GTCTC 1 cut(s) 602
BsmFI GGGAC 2 cut(s) 159, 727
BsnI GGCC 4 cut(s) 107, 186, 212, 853
Bso31I GGTCTC 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 377
Bsp13I TCCGGA 2 cut(s) 301, 361
Bsp143I GATC 2 cut(s) 247, 742
Bsp1720I GCTNAGC 1 cut(s) 682
BspACI CCGC 9 cut(s) 8, 30, 111, 155, 270, 326, 533, 782, 818
BspANI GGCC 4 cut(s) 107, 186, 212, 853
BspCNI CTCAG 1 cut(s) 910
BspEI TCCGGA 2 cut(s) 301, 361
BspLI GGNNCC 3 cut(s) 169, 202, 715
BspMI ACCTGC 2 cut(s) 301, 503
BspOI GCTAGC 1 cut(s) 533
BspPI GGATC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 602
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 2 cut(s) 171, 612
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 4 cut(s) 25, 164, 181, 487
BssMI GATC 2 cut(s) 247, 742
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 379, 883
Bst6I CTCTTC 2 cut(s) 600, 974
BstBAI YACGTR 2 cut(s) 226, 596
BstC8I GCNNGC 8 cut(s) 355, 373, 407, 531, 654, 855, 868, 947
BstDEI CTNAG 3 cut(s) 266, 682, 918
BstF5I GGATG 2 cut(s) 352, 774
BstH2I RGCGCY 1 cut(s) 769
BstHHI GCGC 1 cut(s) 768
BstKTI GATC 2 cut(s) 250, 745
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 2 cut(s) 247, 742
BstMWI GCNNNNNNNGC 3 cut(s) 763, 863, 920
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 4 cut(s) 25, 163, 328, 486
BstSFI CTRYAG 1 cut(s) 796
BstSLI GKGCMC 1 cut(s) 377
BstV1I GCAGC 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 742
BstXI CCANNNNNNTGG 2 cut(s) 785, 953
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 4 cut(s) 107, 186, 212, 853
BtsCI GGATG 2 cut(s) 352, 774
BtsIMutI CAGTG 2 cut(s) 619, 915
BveI ACCTGC 2 cut(s) 301, 503
Cac8I GCNNGC 8 cut(s) 355, 373, 407, 531, 654, 855, 868, 947
CfoI GCGC 1 cut(s) 768
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 6 cut(s) 32, 40, 88, 168, 384, 714
CpoI CGGWCCG 1 cut(s) 32
Csp6I GTAC 2 cut(s) 50, 178
CspI CGGWCCG 1 cut(s) 32
CviAII CATG 3 cut(s) 437, 871, 975
CviQI GTAC 2 cut(s) 50, 178
DdeI CTNAG 3 cut(s) 266, 682, 918
DpnI GATC 2 cut(s) 249, 744
DpnII GATC 2 cut(s) 247, 742
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 600, 974
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 2 cut(s) 600, 974
EciI GGCGGA 2 cut(s) 45, 315
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 6 cut(s) 32, 40, 88, 168, 384, 714
Eco72I CACGTG 2 cut(s) 226, 596
EcoO109I RGGNCCY 3 cut(s) 40, 88, 714
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 3 cut(s) 440, 874, 978
FaiI YATR 6 cut(s) 282, 398, 438, 872, 951, 976
FaqI GGGAC 2 cut(s) 159, 727
FatI CATG 3 cut(s) 436, 870, 974
FauI CCCGC 1 cut(s) 162
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 3 cut(s) 351, 534, 783
FokI GGATG 2 cut(s) 359, 761
Fsp4HI GCNGC 3 cut(s) 351, 534, 783
FspBI CTAG 3 cut(s) 530, 740, 942
GlaI GCGC 1 cut(s) 767
GluI GCNGC 3 cut(s) 351, 534, 783
HaeII RGCGCY 1 cut(s) 769
HaeIII GGCC 4 cut(s) 107, 186, 212, 853
HapII CCGG 7 cut(s) 27, 35, 164, 302, 362, 406, 487
HhaI GCGC 1 cut(s) 768
Hin1II CATG 3 cut(s) 440, 874, 978
Hin6I GCGC 1 cut(s) 766
HinP1I GCGC 1 cut(s) 766
HinfI GANTC 1 cut(s) 453
HpaII CCGG 7 cut(s) 27, 35, 164, 302, 362, 406, 487
HphI GGTGA 4 cut(s) 431, 763, 886, 917
Hpy166II GTNNAC 4 cut(s) 375, 387, 791, 889
Hpy188I TCNGA 2 cut(s) 82, 474
Hpy188III TCNNGA 5 cut(s) 136, 198, 302, 362, 806
Hpy8I GTNNAC 4 cut(s) 375, 387, 791, 889
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 4 cut(s) 136, 283, 337, 595
HpyCH4III ACNGT 2 cut(s) 379, 883
HpyCH4IV ACGT 4 cut(s) 225, 461, 595, 667
HpyCH4V TGCA 4 cut(s) 375, 467, 593, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 763, 863, 920
HpyF3I CTNAG 3 cut(s) 266, 682, 918
HpySE526I ACGT 4 cut(s) 225, 461, 595, 667
Hsp92II CATG 3 cut(s) 440, 874, 978
HspAI GCGC 1 cut(s) 766
Kpn2I TCCGGA 2 cut(s) 301, 361
KroI GCCGGC 1 cut(s) 405
KroNI GCCGGC 1 cut(s) 407
Kzo9I GATC 2 cut(s) 247, 742
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 1 cut(s) 337
LweI GCATC 1 cut(s) 337
MaeI CTAG 3 cut(s) 530, 740, 942
MaeII ACGT 4 cut(s) 225, 461, 595, 667
MaeIII GTNAC 5 cut(s) 16, 228, 505, 668, 730
MalI GATC 2 cut(s) 249, 744
MboI GATC 2 cut(s) 247, 742
MboII GAAGA 6 cut(s) 74, 308, 405, 617, 737, 961
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 4 cut(s) 468, 568, 822, 858
MmeI TCCRAC 2 cut(s) 105, 196
MroI TCCGGA 2 cut(s) 301, 361
MroNI GCCGGC 1 cut(s) 405
MseI TTAA 1 cut(s) 663
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 7 cut(s) 27, 35, 164, 302, 362, 406, 487
MspR9I CCNGG 4 cut(s) 27, 165, 330, 488
MunI CAATTG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 763, 863, 920
NaeI GCCGGC 1 cut(s) 407
NciI CCSGG 3 cut(s) 27, 165, 488
NdeII GATC 2 cut(s) 247, 742
NgoMIV GCCGGC 1 cut(s) 405
NheI GCTAGC 1 cut(s) 529
NlaIII CATG 3 cut(s) 440, 874, 978
NlaIV GGNNCC 3 cut(s) 169, 202, 715
NmeAIII GCCGAG 2 cut(s) 162, 310
NmuCI GTSAC 3 cut(s) 228, 505, 730
PdiI GCCGGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 453
PflFI GACNNNGTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 934
PkrI GCNGC 3 cut(s) 352, 535, 784
PmaCI CACGTG 2 cut(s) 226, 596
PmlI CACGTG 2 cut(s) 226, 596
Ppu21I YACGTR 2 cut(s) 226, 596
PpuMI RGGWCCY 3 cut(s) 40, 88, 714
Psp5II RGGWCCY 3 cut(s) 40, 88, 714
Psp6I CCWGG 1 cut(s) 328
PspCI CACGTG 2 cut(s) 226, 596
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 3 cut(s) 169, 202, 715
PspPI GGNCC 6 cut(s) 32, 40, 88, 168, 384, 714
PspPPI RGGWCCY 3 cut(s) 40, 88, 714
PsuI RGATCY 1 cut(s) 742
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 2 cut(s) 51, 179
RsaNI GTAC 2 cut(s) 50, 178
RseI CAYNNNNRTG 1 cut(s) 98
Rsr2I CGGWCCG 1 cut(s) 32
RsrII CGGWCCG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 3 cut(s) 351, 534, 783
Sau3AI GATC 2 cut(s) 247, 742
Sau96I GGNCC 6 cut(s) 32, 40, 88, 168, 384, 714
ScrFI CCNGG 4 cut(s) 27, 165, 330, 488
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 796
SinI GGWCC 6 cut(s) 32, 40, 88, 168, 384, 714
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 718
SmoI CTYRAG 1 cut(s) 718
Sse9I AATT 4 cut(s) 468, 568, 822, 858
SsiI CCGC 9 cut(s) 8, 30, 111, 155, 270, 326, 533, 782, 818
SspMI CTAG 3 cut(s) 530, 740, 942
StyD4I CCNGG 4 cut(s) 25, 163, 328, 486
TaaI ACNGT 2 cut(s) 379, 883
TaiI ACGT 4 cut(s) 228, 464, 598, 670
TaqI TCGA 4 cut(s) 189, 207, 446, 675
TasI AATT 4 cut(s) 468, 568, 822, 858
TatI WGTACW 1 cut(s) 49
TauI GCSGC 2 cut(s) 536, 785
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 2 cut(s) 619, 922
TseFI GTSAC 3 cut(s) 228, 505, 730
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 3 cut(s) 228, 505, 730
TspDTI ATGAA 2 cut(s) 17, 425
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 2 cut(s) 619, 922
Tth111I GACNNNGTC 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 934
VneI GTGCAC 1 cut(s) 373
VpaK11BI GGWCC 6 cut(s) 32, 40, 88, 168, 384, 714
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 3 cut(s) 530, 740, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.