Rroxscaffold_1G00072770

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000394
Physical Location & Seq
Forward (+)
93790389 .. 93794302
3914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072770.1

Sequence Viewer

Length: 366 bp
ATGGCGGGTCAAGTGGTATTGGAACATTTGCCATTCAAATGGCTAAACACCAGGGGTGACTGTATTTGTCACTGCAGGCTGGTCACCATTGGTCCTAACTGTAATACGTTTGGACAAGATTCTCACAAGGAAAGTTTGGGGCGCCACATTGTCAATGCGTGTGCATTGCGGAACAGAACTCCAGAAATGAAAGCCTTAATTGCTAAGAAGGTGTTGAAGCATGTTTGGCCTGCAATAAGGAATGGCCATGTGGAAGCTTCCAATATCAAGACTTTCACCTTCAAGCAAGCAGCAGAGGCCCATGCACTCATGGAATCTGGCAACTTTACTGGAAAGATTTTGCTTATGCCAGGGACATTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

121

Amino Acids

13.4

Weight (kDa)

9.5

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N_2 PF13602 25 - 115 2.3e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 141
AciI CCGC 2 cut(s) 5, 169
AcoI YGGCCR 1 cut(s) 244
AcyI GRCGYC 1 cut(s) 142
AgsI TTSAA 3 cut(s) 37, 217, 283
AjnI CCWGG 2 cut(s) 50, 349
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
AoxI GGCC 3 cut(s) 227, 244, 297
ApeKI GCWGC 1 cut(s) 290
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 92, 298
AsuHPI GGTGA 3 cut(s) 68, 76, 268
AvaII GGWCC 1 cut(s) 92
BalI TGGCCA 1 cut(s) 246
BanI GGYRCC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 302
BciT130I CCWGG 2 cut(s) 52, 351
BfmI CTRYAG 1 cut(s) 73
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 52, 351
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 2 cut(s) 92, 298
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 2 cut(s) 52, 351
BpmI CTGGAG 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 51, 350
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 164
BseBI CCWGG 2 cut(s) 52, 351
BseDI CCNNGG 2 cut(s) 51, 350
BseMI GCAATG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 302
BshFI GGCC 3 cut(s) 229, 246, 299
BshNI GGYRCC 1 cut(s) 141
BsnI GGCC 3 cut(s) 229, 246, 299
BspACI CCGC 2 cut(s) 5, 169
BspANI GGCC 3 cut(s) 229, 246, 299
BspLI GGNNCC 1 cut(s) 143
BspMAI CTGCAG 1 cut(s) 77
BspT107I GGYRCC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 164
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 2 cut(s) 51, 350
BssNI GRCGYC 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 52, 351
Bst4CI ACNGT 2 cut(s) 62, 101
BstACI GRCGYC 1 cut(s) 142
BstC8I GCNNGC 3 cut(s) 77, 231, 288
BstDEI CTNAG 1 cut(s) 204
BstEII GGTNACC 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 200, 226, 296
BstNI CCWGG 2 cut(s) 52, 351
BstNSI RCATGY 1 cut(s) 224
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 50, 349
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 39
BsuRI GGCC 3 cut(s) 229, 246, 299
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 77, 231, 288
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 92, 298
CviAII CATG 5 cut(s) 221, 248, 302, 310, 363
CviJI RGCY 7 cut(s) 43, 79, 194, 229, 246, 257, 299
CviKI_1 RGCY 7 cut(s) 43, 79, 194, 229, 246, 257, 299
DdeI CTNAG 1 cut(s) 204
DinI GGCGCC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 50, 349
EgeI GGCGCC 1 cut(s) 143
EheI GGCGCC 1 cut(s) 143
FaeI CATG 5 cut(s) 224, 251, 305, 313, 366
FaiI YATR 6 cut(s) 222, 249, 303, 311, 347, 364
FatI CATG 5 cut(s) 220, 247, 301, 309, 362
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
GlaI GCGC 1 cut(s) 143
GluI GCNGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 3 cut(s) 229, 246, 299
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 1 cut(s) 142
Hin1II CATG 5 cut(s) 224, 251, 305, 313, 366
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 119, 314
HphI GGTGA 3 cut(s) 68, 76, 268
Hpy188III TCNNGA 2 cut(s) 182, 268
HpyAV CCTTC 2 cut(s) 202, 289
HpyCH4III ACNGT 2 cut(s) 62, 101
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 4 cut(s) 75, 164, 233, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 226, 296
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 107
Hsp92I GRCGYC 1 cut(s) 142
Hsp92II CATG 5 cut(s) 224, 251, 305, 313, 366
HspAI GCGC 1 cut(s) 142
KasI GGCGCC 1 cut(s) 141
LpnPI CCDG 9 cut(s) 37, 61, 64, 65, 195, 243, 303, 315, 336
Lsp1109I GCAGC 1 cut(s) 302
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 56, 68, 82
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 1 cut(s) 198
MluNI TGGCCA 1 cut(s) 246
Mly113I GGCGCC 1 cut(s) 142
MnlI CCTC 1 cut(s) 289
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MseI TTAA 1 cut(s) 197
MslI CAYNNNNRTG 2 cut(s) 37, 361
Msp20I TGGCCA 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 52, 351
MvaI CCWGG 2 cut(s) 52, 351
MwoI GCNNNNNNNGC 3 cut(s) 200, 226, 296
NarI GGCGCC 1 cut(s) 142
NlaIII CATG 5 cut(s) 224, 251, 305, 313, 366
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 3 cut(s) 56, 68, 82
NspI RCATGY 1 cut(s) 224
PfeI GAWTC 2 cut(s) 119, 314
PkrI GCNGC 1 cut(s) 292
PluTI GGCGCC 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 50, 349
PspEI GGTNACC 1 cut(s) 82
PspGI CCWGG 2 cut(s) 50, 349
PspN4I GGNNCC 1 cut(s) 143
PspPI GGNCC 2 cut(s) 92, 298
PstI CTGCAG 1 cut(s) 77
RseI CAYNNNNRTG 2 cut(s) 37, 361
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 1 cut(s) 291
Sau96I GGNCC 2 cut(s) 92, 298
ScrFI CCNGG 2 cut(s) 52, 351
SetI ASST 4 cut(s) 110, 213, 259, 281
SfcI CTRYAG 1 cut(s) 73
SfoI GGCGCC 1 cut(s) 143
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 2 cut(s) 37, 361
Sse9I AATT 1 cut(s) 198
SsiI CCGC 2 cut(s) 5, 169
SspDI GGCGCC 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 50, 349
TaaI ACNGT 2 cut(s) 62, 101
TaiI ACGT 1 cut(s) 110
TasI AATT 1 cut(s) 198
TfiI GAWTC 2 cut(s) 119, 314
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TscAI CASTG 1 cut(s) 77
TseFI GTSAC 3 cut(s) 56, 68, 82
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 3 cut(s) 56, 68, 82
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 92
XceI RCATGY 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.