Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Forward (+)

643793 .. 645804

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAACCTTAAGAATCGAAATGTTCCTCACAACCATTTGATCATAGCCAATATTCACAAAATGTCTTCACCGTCTTCATCAGGGCTTGCTGGTTCTTTAACATCGACAGTGAAGTTATGTTCCTCATCACACCCCAAATATGAATCACACATGAAATACAGTGTATATGTCTTCTTTCCAGCTTCTGCAGAAGCCGAAAATCTAAGCTGGATCTTCGACTTCTTTAGTAGGGGAACTTTCTTGATTGCAAGCATTTATCACAAATATAGAAATGCCAAGCTGACATTATCTCATATGGTTGTTGTGTATGCAATGGCTGGCTTCCGGTATAGAAATACAAAATACAAAGCGAGAATTGTCAAGGAGGTTGAGGAGCACGTGTGGCCTCTTATTGCAGCTGGTGGGGTAAAACCTGTTGTCCCTCACCGTTTTCCATTCTCTAAAGCAACAGAAGCGCACCGGCTCATGGAAAGTGGTGAGCACATAGGGAAGATACTGCTTATCCGTGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

171

Amino Acids

19.4

Weight (kDa)

9.88

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N_2	PF13602	119 - 167	8e-12	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	218
AcvI	CACGTG	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflII	CTTAAG	1 cut(s)	8
AflIII	ACRYGT	1 cut(s)	378
AluBI	AGCT	4 cut(s)	182, 207, 280, 398
AluI	AGCT	4 cut(s)	182, 207, 280, 398
Alw21I	GWGCWC	2 cut(s)	378, 483
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	457
AsuHPI	GGTGA	3 cut(s)	60, 416, 488
BbrPI	CACGTG	1 cut(s)	379
BbsI	GAAGAC	3 cut(s)	57, 66, 163
Bbv12I	GWGCWC	2 cut(s)	378, 483
BbvI	GCAGC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	39
BfmI	CTRYAG	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	8
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
BpiI	GAAGAC	3 cut(s)	57, 66, 163
BsaAI	YACGTR	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse118I	RCCGGY	1 cut(s)	459
Bse3DI	GCAATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	2 cut(s)	378, 483
BsiSI	CCGG	2 cut(s)	325, 460
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	378, 483
Bsp143I	GATC	2 cut(s)	39, 210
BspANI	GGCC	1 cut(s)	385
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	218
BspTI	CTTAAG	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	459
BssMI	GATC	2 cut(s)	39, 210
Bst4CI	ACNGT	4 cut(s)	72, 109, 161, 428
BstAFI	CTTAAG	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	3 cut(s)	87, 250, 319
BstDEI	CTNAG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	2 cut(s)	42, 213
BstMBI	GATC	2 cut(s)	39, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 452
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	3 cut(s)	57, 66, 163
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	114, 166
Cac8I	GCNNGC	3 cut(s)	87, 250, 319
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	1 cut(s)	459
CviAII	CATG	2 cut(s)	151, 466
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	2 cut(s)	41, 212
DpnII	GATC	2 cut(s)	39, 210
Eco72I	CACGTG	1 cut(s)	379
FaeI	CATG	2 cut(s)	154, 469
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	2 cut(s)	150, 465
FauNDI	CATATG	1 cut(s)	294
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	396
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	2 cut(s)	325, 460
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	154, 469
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HinfI	GANTC	2 cut(s)	13, 143
HpaII	CCGG	2 cut(s)	325, 460
HphI	GGTGA	3 cut(s)	60, 416, 488
Hpy188III	TCNNGA	1 cut(s)	241
HpyCH4III	ACNGT	4 cut(s)	72, 109, 161, 428
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	4 cut(s)	188, 248, 311, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 452
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	154, 469
HspAI	GCGC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 210
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	9 cut(s)	66, 75, 192, 193, 303, 338, 384, 426, 473
Lsp1109I	GCAGC	1 cut(s)	407
MaeII	ACGT	1 cut(s)	378
MalI	GATC	2 cut(s)	41, 212
MboI	GATC	2 cut(s)	39, 210
MboII	GAAGA	5 cut(s)	57, 66, 163, 205, 502
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	378, 483
MluCI	AATT	1 cut(s)	354
MnlI	CCTC	6 cut(s)	36, 133, 358, 364, 396, 432
MseI	TTAA	2 cut(s)	9, 98
MspA1I	CMGCKG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	2 cut(s)	325, 460
MwoI	GCNNNNNNNGC	2 cut(s)	382, 452
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	2 cut(s)	39, 210
NlaIII	CATG	2 cut(s)	154, 469
PfeI	GAWTC	2 cut(s)	13, 143
PkrI	GCNGC	1 cut(s)	397
PmaCI	CACGTG	1 cut(s)	379
PmlI	CACGTG	1 cut(s)	379
Ppu21I	YACGTR	1 cut(s)	379
PspCI	CACGTG	1 cut(s)	379
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	210
PvuII	CAGCTG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	9, 98
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	39, 210
SduI	GDGCHC	2 cut(s)	378, 483
SetI	ASST	8 cut(s)	9, 184, 209, 282, 369, 381, 400, 415
SfcI	CTRYAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	354
SspI	AATATT	1 cut(s)	52
TaaI	ACNGT	4 cut(s)	72, 109, 161, 428
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	3 cut(s)	16, 104, 216
TasI	AATT	1 cut(s)	354
TfiI	GAWTC	2 cut(s)	13, 143
Tru1I	TTAA	2 cut(s)	9, 98
Tru9I	TTAA	2 cut(s)	9, 98
TscAI	CASTG	2 cut(s)	114, 166
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	4 cut(s)	17, 66, 156, 167
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	2 cut(s)	114, 166
Vha464I	CTTAAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.