Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

24055853 .. 24058346

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30970

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTTTTGGTTAGGCCCCCCTCCTTTGTCATTCAACTCATTTTGGATTAATAATTGGAGTGTTAGGGAGGTTATTGTTCCTATTCTAGCACTCATTTCATCCAAAAAACAAAAAAAACTTTCTTGCTTCTTGTGGCTGCACTTGGCTGAGCTCATATTTATTAGAATCGAACTTCTTGTGTGTGCTGTTCTGAGTGGAGGAGGATACGCTGAGATGGTAGCTGTTCAAGAAGGATTGGTATTTCCTATCCCCAAAAGTATTTCTATGGAGGAGGCTGCTAGTTTCCCTCAAGTGGCTTGTAGTGTTTGGGCCGCACTTTTTATGGAAAACAAGCTATGTTTTGAATATTGGTTACCCGCTGGTAGGAACAGTCGGCTAATTGCCGGTGAAACTATATTGGTTCATGGGGGATCCGGGGGAATTGGTTCATTTGCAGTACAGTTAGCAAAAGCCCGGGGTGTAAAGGTGATTGTCACAGCAGGTAGTGACAAGTTAGAGTTCTGTAAGACACTTGGAGCTGATGCATGCATCAGTTTCAATTACAAGGACAAGGAAGATGACTTTATTGAAAGGGTAAATAGAGAAACAGATGCCAACAAAGGTGTTGATGTCGTCTTGAGTAGCCTCCCGATTGAATATATGCCATGGAACCATGCCTGTGTTAAGCAAGGTGGGACAGTTATTAAGATCAATGGTTGTTGGATGCTACCAAAAGATACTCGTGCTAGCACTCCACAGCCAAAAAAAGTGAATTCTGAGCTTCAGGCGAACTTGAACATAGGAGTGGCTGGCTTTCGGTTTAGAAAGCTAGAAGAGAGAGCAAAAGTTGTCGAGGAGGTACAGAAGCATGTGTGGCCGTTAATAGAAGTTGGTAAGGTAAAACCTGTTGTGCATCATCGTTTTCCATTCGCTAAAGCAGCAGAGGCTCACCGGCTCATGGAGAGTGGCAAGCATTTTGGAAAGATCCTGCTTATTCCTAATGACAGATTTGAGAATTCAAGGATAGAACAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

338

Amino Acids

37.69

Weight (kDa)

8.93

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	140 - 230	2.5e-16	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	171 - 324	1.4e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
AciI	CCGC	2 cut(s)	312, 357
AclWI	GGATC	3 cut(s)	405, 418, 958
AcoI	YGGCCR	1 cut(s)	854
AcsI	RAATTY	2 cut(s)	751, 994
AcuI	CTGAAG	1 cut(s)	746
AfaI	GTAC	2 cut(s)	438, 840
AfiI	CCNNNNNNNGG	3 cut(s)	292, 363, 937
AgsI	TTSAA	8 cut(s)	34, 227, 344, 538, 569, 635, 775, 999
AluBI	AGCT	6 cut(s)	151, 221, 334, 518, 760, 808
AluI	AGCT	6 cut(s)	151, 221, 334, 518, 760, 808
Alw21I	GWGCWC	1 cut(s)	153
AlwI	GGATC	3 cut(s)	405, 418, 958
Ama87I	CYCGRG	1 cut(s)	453
AoxI	GGCC	3 cut(s)	13, 309, 854
ApeKI	GCWGC	3 cut(s)	136, 275, 917
ApoI	RAATTY	2 cut(s)	751, 994
AseI	ATTAAT	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	14, 309
AsuC2I	CCSGG	3 cut(s)	415, 454, 455
AsuHPI	GGTGA	3 cut(s)	398, 478, 920
AsuNHI	GCTAGC	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	453
BamHI	GGATCC	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	123, 262, 929
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	841
BciVI	GTATCC	1 cut(s)	197
BcnI	CCSGG	3 cut(s)	415, 454, 455
BfaI	CTAG	4 cut(s)	86, 279, 726, 809
BfuAI	ACCTGC	1 cut(s)	470
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	4 cut(s)	137, 276, 312, 918
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	4 cut(s)	138, 277, 313, 919
Bme1390I	CCNGG	3 cut(s)	415, 454, 455
BmeT110I	CYCGRG	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	14, 309
BmiI	GGNNCC	3 cut(s)	16, 412, 650
BmrFI	CCNGG	3 cut(s)	415, 454, 455
BmsI	GCATC	5 cut(s)	511, 537, 580, 693, 901
BmtI	GCTAGC	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	2 cut(s)	273, 637
BpuMI	CCSGG	3 cut(s)	415, 454, 455
BsaJI	CCNNGG	4 cut(s)	414, 453, 454, 644
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 363, 937
Bse118I	RCCGGY	2 cut(s)	383, 930
BseDI	CCNNGG	4 cut(s)	414, 453, 454, 644
BseGI	GGATG	2 cut(s)	98, 708
BseLI	CCNNNNNNNGG	3 cut(s)	292, 363, 937
BseMII	CTCAG	4 cut(s)	138, 182, 201, 747
BseRI	GAGGAG	3 cut(s)	213, 284, 848
BseXI	GCAGC	3 cut(s)	123, 262, 929
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	15, 311, 856
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	384, 414, 454, 931
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	3 cut(s)	292, 363, 937
BsmFI	GGGAC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	15, 311, 856
BsoBI	CYCGRG	1 cut(s)	453
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	3 cut(s)	410, 687, 963
Bsp1720I	GCTNAGC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	644
BspACI	CCGC	2 cut(s)	312, 357
BspANI	GGCC	3 cut(s)	15, 311, 856
BspCNI	CTCAG	4 cut(s)	139, 183, 202, 748
BspLI	GGNNCC	3 cut(s)	16, 412, 650
BspMI	ACCTGC	1 cut(s)	470
BspOI	GCTAGC	1 cut(s)	729
BspPI	GGATC	3 cut(s)	405, 418, 958
BsrFI	RCCGGY	2 cut(s)	383, 930
BssAI	RCCGGY	2 cut(s)	383, 930
BssECI	CCNNGG	4 cut(s)	414, 453, 454, 644
BssMI	GATC	3 cut(s)	410, 687, 963
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	644
Bst2BI	CACGAG	1 cut(s)	720
Bst4CI	ACNGT	3 cut(s)	371, 441, 679
Bst6I	CTCTTC	1 cut(s)	807
BstC8I	GCNNGC	4 cut(s)	526, 727, 790, 950
BstDEI	CTNAG	4 cut(s)	147, 191, 210, 756
BstDSI	CCRYGG	1 cut(s)	644
BstEII	GGTNACC	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	98, 708
BstKTI	GATC	3 cut(s)	413, 690, 966
BstMBI	GATC	3 cut(s)	410, 687, 963
BstMWI	GCNNNNNNNGC	3 cut(s)	853, 917, 923
BstNSI	RCATGY	2 cut(s)	528, 851
BstPI	GGTNACC	1 cut(s)	351
BstSCI	CCNGG	3 cut(s)	413, 452, 453
BstV1I	GCAGC	3 cut(s)	123, 262, 929
BstX2I	RGATCY	2 cut(s)	410, 963
BstYI	RGATCY	2 cut(s)	410, 963
BsuI	GTATCC	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	15, 311, 856
BtgI	CCRYGG	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	98, 708
BveI	ACCTGC	1 cut(s)	470
Cac8I	GCNNGC	4 cut(s)	526, 727, 790, 950
Cfr10I	RCCGGY	2 cut(s)	383, 930
Cfr13I	GGNCC	2 cut(s)	14, 309
Cfr9I	CCCGGG	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	437, 839
CviAII	CATG	6 cut(s)	404, 525, 645, 653, 848, 937
CviQI	GTAC	2 cut(s)	437, 839
DdeI	CTNAG	4 cut(s)	147, 191, 210, 756
DpnI	GATC	3 cut(s)	412, 689, 965
DpnII	GATC	3 cut(s)	410, 687, 963
EaeI	YGGCCR	1 cut(s)	854
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	453
Eco91I	GGTNACC	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	14
EcoO65I	GGTNACC	1 cut(s)	351
EcoRI	GAATTC	2 cut(s)	751, 994
EcoT14I	CCWWGG	1 cut(s)	644
EcoT22I	ATGCAT	2 cut(s)	526, 530
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	644
FaeI	CATG	6 cut(s)	407, 528, 648, 656, 851, 940
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	6 cut(s)	403, 524, 644, 652, 847, 936
FauI	CCCGC	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	137, 276, 312, 918
FokI	GGATG	2 cut(s)	85, 715
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	4 cut(s)	137, 276, 312, 918
FspBI	CTAG	4 cut(s)	86, 279, 726, 809
GluI	GCNGC	4 cut(s)	137, 276, 312, 918
HaeIII	GGCC	3 cut(s)	15, 311, 856
HapII	CCGG	4 cut(s)	384, 414, 454, 931
Hin1II	CATG	6 cut(s)	407, 528, 648, 656, 851, 940
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	4 cut(s)	384, 414, 454, 931
HphI	GGTGA	3 cut(s)	398, 478, 920
Hpy188I	TCNGA	2 cut(s)	192, 757
Hpy188III	TCNNGA	3 cut(s)	227, 616, 628
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	3 cut(s)	371, 441, 679
HpyCH4V	TGCA	5 cut(s)	139, 434, 524, 528, 892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	853, 917, 923
HpyF3I	CTNAG	4 cut(s)	147, 191, 210, 756
Hsp92II	CATG	6 cut(s)	407, 528, 648, 656, 851, 940
Kzo9I	GATC	3 cut(s)	410, 687, 963
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	3 cut(s)	123, 262, 929
LweI	GCATC	5 cut(s)	511, 537, 580, 693, 901
MaeI	CTAG	4 cut(s)	86, 279, 726, 809
MaeIII	GTNAC	3 cut(s)	351, 472, 485
MalI	GATC	3 cut(s)	412, 689, 965
MboI	GATC	3 cut(s)	410, 687, 963
MboII	GAAGA	2 cut(s)	566, 824
MflI	RGATCY	2 cut(s)	410, 963
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	6 cut(s)	52, 378, 420, 538, 751, 994
MmeI	TCCRAC	1 cut(s)	680
Mph1103I	ATGCAT	2 cut(s)	526, 530
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	5 cut(s)	48, 663, 684, 860, 1015
MslI	CAYNNNNRTG	2 cut(s)	657, 782
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	4 cut(s)	384, 414, 454, 931
MspR9I	CCNGG	3 cut(s)	415, 454, 455
MwoI	GCNNNNNNNGC	3 cut(s)	853, 917, 923
NciI	CCSGG	3 cut(s)	415, 454, 455
NcoI	CCATGG	1 cut(s)	644
NdeII	GATC	3 cut(s)	410, 687, 963
NheI	GCTAGC	1 cut(s)	725
NlaIII	CATG	6 cut(s)	407, 528, 648, 656, 851, 940
NlaIV	GGNNCC	3 cut(s)	16, 412, 650
NmuCI	GTSAC	2 cut(s)	472, 485
NsiI	ATGCAT	2 cut(s)	526, 530
NspI	RCATGY	2 cut(s)	528, 851
PaeI	GCATGC	1 cut(s)	528
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	4 cut(s)	138, 277, 313, 919
PshBI	ATTAAT	1 cut(s)	48
Psp124BI	GAGCTC	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	351
PspN4I	GGNNCC	3 cut(s)	16, 412, 650
PspPI	GGNCC	2 cut(s)	14, 309
PsuI	RGATCY	2 cut(s)	410, 963
RsaI	GTAC	2 cut(s)	438, 840
RsaNI	GTAC	2 cut(s)	437, 839
RseI	CAYNNNNRTG	2 cut(s)	657, 782
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	5 cut(s)	48, 663, 684, 860, 1015
SatI	GCNGC	4 cut(s)	137, 276, 312, 918
Sau3AI	GATC	3 cut(s)	410, 687, 963
Sau96I	GGNCC	2 cut(s)	14, 309
ScrFI	CCNGG	3 cut(s)	415, 454, 455
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	5 cut(s)	511, 537, 580, 693, 901
SmaI	CCCGGG	1 cut(s)	455
SmiMI	CAYNNNNRTG	2 cut(s)	657, 782
SmlI	CTYRAG	2 cut(s)	288, 616
SmoI	CTYRAG	2 cut(s)	288, 616
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	6 cut(s)	52, 378, 420, 538, 751, 994
SsiI	CCGC	2 cut(s)	312, 357
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	4 cut(s)	86, 279, 726, 809
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	413, 452, 453
StyI	CCWWGG	1 cut(s)	644
TaaI	ACNGT	3 cut(s)	371, 441, 679
TaqI	TCGA	2 cut(s)	168, 831
TasI	AATT	6 cut(s)	52, 378, 420, 538, 751, 994
TatI	WGTACW	1 cut(s)	436
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	5 cut(s)	48, 663, 684, 860, 1015
Tru9I	TTAA	5 cut(s)	48, 663, 684, 860, 1015
TseFI	GTSAC	2 cut(s)	472, 485
TseI	GCWGC	3 cut(s)	136, 275, 917
Tsp45I	GTSAC	2 cut(s)	472, 485
TspDTI	ATGAA	3 cut(s)	87, 392, 417
TspMI	CCCGGG	1 cut(s)	453
VspI	ATTAAT	1 cut(s)	48
XapI	RAATTY	2 cut(s)	751, 994
XceI	RCATGY	2 cut(s)	528, 851
XmaI	CCCGGG	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	4 cut(s)	86, 279, 726, 809
Zsp2I	ATGCAT	2 cut(s)	526, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.