Rh5CG059400

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
4380449 .. 4381629
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG059400.1

Sequence Viewer

Length: 567 bp
ATGAAGGCCACAGTGGTTATCTCTCCAAGTACGGGAAGTGGAAGACCCCAAAATAAAAGACGACGAGGTCCTAGTCAAAGTCGAGGCCACGTCACTGAACCAGGCCGACAGCTTACAGCGGCTTGGCTTCTACCCACCACCTCCGGGTTCCAGCGAGTTACTGGGCCTGGAATGTTCTGGAACCATCGAGGCCGTCGGGGAACAAGTGTCACGCTGGAAAGCCGGCGATCAGGTGATCGTTTTGGAATGTGTGTGCTGTTCTTACGGGAGGAGGCTATGCCGAGAAGGTGGCTGTTCCGGCTGGACGACTGTTTTCAAGACGAGTTGACTATCTTCTGGGGAAATATTTTTGGTGTTGATGTCATCTTGGATATCCTTGGGGCAGCCTATTTTCAGCGAAACCTTGAGGCTTTAAACTTTGATCGGAGGATTTTCGTGATTGGGACCATGGGTGGTTTAGTTACAGAATTGGATCTTCGTGTTGTGCTTATTGCGAAGCGCCTCACCATCCAAGCGGCTGGCTTGCGATCTAGAAGTCGAGAAAAACAAAGCATTCATAGTGAGTGA

Protein Analysis

188

Amino Acids

21.31

Weight (kDa)

11.31

Isoelectric Point (pI)

74.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AciI CCGC 2 cut(s) 119, 515
AclWI GGATC 1 cut(s) 480
AfaI GTAC 1 cut(s) 31
AfiI CCNNNNNNNGG 2 cut(s) 32, 144
AgsI TTSAA 1 cut(s) 317
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 2 cut(s) 100, 166
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 1 cut(s) 480
AoxI GGCC 5 cut(s) 6, 85, 103, 164, 190
ApeKI GCWGC 1 cut(s) 383
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 3 cut(s) 68, 164, 444
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 245, 496
AvaII GGWCC 2 cut(s) 68, 444
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 395
BccI CCATC 2 cut(s) 192, 515
BceAI ACGGC 1 cut(s) 177
BciT130I CCWGG 2 cut(s) 102, 168
BcnI CCSGG 1 cut(s) 145
BfaI CTAG 2 cut(s) 72, 531
BfoI RGCGCY 1 cut(s) 502
BisI GCNGC 3 cut(s) 120, 384, 516
BlsI GCNGC 3 cut(s) 121, 385, 517
Bme1390I CCNGG 3 cut(s) 102, 145, 168
Bme18I GGWCC 2 cut(s) 68, 444
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 3 cut(s) 68, 164, 444
BmiI GGNNCC 3 cut(s) 149, 182, 445
BmrFI CCNGG 3 cut(s) 102, 145, 168
BmrI ACTGGG 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 376, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 32, 144
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 2 cut(s) 102, 168
BseDI CCNNGG 2 cut(s) 376, 447
BseGI GGATG 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 32, 144
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 395
BshFI GGCC 5 cut(s) 8, 87, 105, 166, 192
BsiSI CCGG 3 cut(s) 144, 223, 298
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 2 cut(s) 32, 144
BsmFI GGGAC 1 cut(s) 457
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 5 cut(s) 8, 87, 105, 166, 192
Bsp143I GATC 5 cut(s) 227, 235, 421, 472, 527
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 2 cut(s) 119, 515
BspANI GGCC 5 cut(s) 8, 87, 105, 166, 192
BspLI GGNNCC 3 cut(s) 149, 182, 445
BspPI GGATC 1 cut(s) 480
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 376, 447
BssMI GATC 5 cut(s) 227, 235, 421, 472, 527
BssT1I CCWWGG 2 cut(s) 376, 447
Bst2UI CCWGG 2 cut(s) 102, 168
Bst4CI ACNGT 2 cut(s) 13, 311
BstC8I GCNNGC 3 cut(s) 224, 520, 524
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 507
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 5 cut(s) 230, 238, 424, 475, 530
BstMBI GATC 5 cut(s) 227, 235, 421, 472, 527
BstMWI GCNNNNNNNGC 1 cut(s) 298
BstNI CCWGG 2 cut(s) 102, 168
BstSCI CCNGG 3 cut(s) 100, 143, 166
BstV1I GCAGC 1 cut(s) 395
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 518
BstYI RGATCY 1 cut(s) 472
BsuRI GGCC 5 cut(s) 8, 87, 105, 166, 192
BtgI CCRYGG 1 cut(s) 447
BtrI CACGTC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 18, 93
Cac8I GCNNGC 3 cut(s) 224, 520, 524
CfoI GCGC 1 cut(s) 501
Cfr10I RCCGGY 1 cut(s) 222
Cfr13I GGNCC 3 cut(s) 68, 164, 444
Csp6I GTAC 1 cut(s) 30
CviAII CATG 1 cut(s) 448
CviQI GTAC 1 cut(s) 30
DpnI GATC 5 cut(s) 229, 237, 423, 474, 529
DpnII GATC 5 cut(s) 227, 235, 421, 472, 527
DraI TTTAAA 1 cut(s) 414
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 376, 447
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 68, 444
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 100, 166
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 376, 447
ErhI CCWWGG 2 cut(s) 376, 447
FaeI CATG 1 cut(s) 451
FaiI YATR 3 cut(s) 278, 449, 558
FaqI GGGAC 1 cut(s) 457
FatI CATG 1 cut(s) 447
Fnu4HI GCNGC 3 cut(s) 120, 384, 516
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 3 cut(s) 120, 384, 516
FspBI CTAG 2 cut(s) 72, 531
GlaI GCGC 1 cut(s) 500
GluI GCNGC 3 cut(s) 120, 384, 516
HaeII RGCGCY 1 cut(s) 502
HaeIII GGCC 5 cut(s) 8, 87, 105, 166, 192
HapII CCGG 3 cut(s) 144, 223, 298
HhaI GCGC 1 cut(s) 501
Hin1II CATG 1 cut(s) 451
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HpaII CCGG 3 cut(s) 144, 223, 298
HphI GGTGA 2 cut(s) 245, 496
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 1 cut(s) 426
Hpy188III TCNNGA 5 cut(s) 178, 317, 436, 531, 539
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 2 cut(s) 66, 198
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 2 cut(s) 13, 311
HpyCH4IV ACGT 1 cut(s) 90
HpyF10VI GCNNNNNNNGC 1 cut(s) 298
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 1 cut(s) 451
HspAI GCGC 1 cut(s) 499
KroI GCCGGC 1 cut(s) 222
KroNI GCCGGC 1 cut(s) 224
Kzo9I GATC 5 cut(s) 227, 235, 421, 472, 527
Lsp1109I GCAGC 1 cut(s) 395
MaeI CTAG 2 cut(s) 72, 531
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 4 cut(s) 91, 157, 208, 460
MalI GATC 5 cut(s) 229, 237, 423, 474, 529
MboI GATC 5 cut(s) 227, 235, 421, 472, 527
MboII GAAGA 3 cut(s) 54, 325, 467
MflI RGATCY 1 cut(s) 472
MluCI AATT 1 cut(s) 467
MnlI CCTC 9 cut(s) 59, 77, 151, 182, 262, 265, 400, 420, 512
MroNI GCCGGC 1 cut(s) 222
MseI TTAA 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 3 cut(s) 144, 223, 298
MspR9I CCNGG 3 cut(s) 102, 145, 168
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 2 cut(s) 102, 168
MwoI GCNNNNNNNGC 1 cut(s) 298
NaeI GCCGGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 145
NcoI CCATGG 1 cut(s) 447
NdeII GATC 5 cut(s) 227, 235, 421, 472, 527
NgoMIV GCCGGC 1 cut(s) 222
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 3 cut(s) 149, 182, 445
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 2 cut(s) 91, 208
PctI GAATGC 1 cut(s) 552
PdiI GCCGGC 1 cut(s) 224
PflFI GACNNNGTC 1 cut(s) 66
PkrI GCNGC 3 cut(s) 121, 385, 517
PpuMI RGGWCCY 1 cut(s) 68
Psp5II RGGWCCY 1 cut(s) 68
Psp6I CCWGG 2 cut(s) 100, 166
PspGI CCWGG 2 cut(s) 100, 166
PspN4I GGNNCC 3 cut(s) 149, 182, 445
PspPI GGNCC 3 cut(s) 68, 164, 444
PspPPI RGGWCCY 1 cut(s) 68
PsuI RGATCY 1 cut(s) 472
PsyI GACNNNGTC 1 cut(s) 66
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 3 cut(s) 120, 384, 516
Sau3AI GATC 5 cut(s) 227, 235, 421, 472, 527
Sau96I GGNCC 3 cut(s) 68, 164, 444
ScrFI CCNGG 3 cut(s) 102, 145, 168
SetI ASST 7 cut(s) 70, 93, 114, 143, 235, 290, 405
SinI GGWCC 2 cut(s) 68, 444
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 1 cut(s) 467
SsiI CCGC 2 cut(s) 119, 515
SspI AATATT 1 cut(s) 346
SspMI CTAG 2 cut(s) 72, 531
StyD4I CCNGG 3 cut(s) 100, 143, 166
StyI CCWWGG 2 cut(s) 376, 447
TaaI ACNGT 2 cut(s) 13, 311
TaiI ACGT 1 cut(s) 93
TaqI TCGA 3 cut(s) 82, 187, 538
TasI AATT 1 cut(s) 467
TauI GCSGC 2 cut(s) 122, 518
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 2 cut(s) 18, 100
TseFI GTSAC 2 cut(s) 91, 208
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 2 cut(s) 91, 208
TspDTI ATGAA 2 cut(s) 17, 545
TspRI CASTG 2 cut(s) 18, 100
Tth111I GACNNNGTC 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 68, 444
XbaI TCTAGA 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XspI CTAG 2 cut(s) 72, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.