Rh5CG029500

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000394
Physical Location & Seq
Reverse (-)
1846561 .. 1848704
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG029500.1

Sequence Viewer

Length: 678 bp
ATGCACAAGCTCCGTGGATCTAGCTCTCGCAAGTCAGAATCTTCTGGGAATAAGTGGTATTCCAAGAGAGGGAAAGGTGGTAATGATAACGAGGCGACTCAGAGAGACGAGGAAACGCCAGAGGTGACCCAGTTTATGTTTGCCGTTGTCACTACGACTGAAGGTAAAGCGGATGTCCTCCAAGTACGTCTTGTGCCAAAGCCGAAACCCAAAGCGGACGAGATGCTCGTAAAAGTGTCCTACGCGGGGGTGAATCGACCGGACATCCACCAGAGGGAGACGAAGTTACCACCCTGGGAAGGAAGCAGCGACGGAGGAAGCAACAGAAGAAGCGACTATCTCGGACTCGAGTGTTCTGGAACCATCAGTGTGTATGGGGTGGGCATGTCCGGAAAAGATATGAAAGCCTGGAAAATAGGCGACAAGGTGTGTGCTATTACCGACGGAGGAAGTTATGCACAGTACGTCGCTGTTCCAGTTGCACAATTGCTTCCTTTTCCATCTAATAGTACTAGTCTAAAGGAGGCTGCCACATTTCCTCAAGCTGCTTTTACTGTATGGTCAGAGACTCAGAGTTGTTTATGGAGGAAAGGCTATCTGATGCGCTGCAGGAGTATGAGAAAAAAGGGGCTCGTCTTTCTTCTGGTGAAACACTTTGATTCATGGGGGGTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

225

Amino Acids

24.91

Weight (kDa)

9.51

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 72 - 167 1.7e-10 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 245
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 3 cut(s) 170, 215, 245
AclWI GGATC 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 3 cut(s) 186, 464, 511
AfiI CCNNNNNNNGG 4 cut(s) 69, 246, 274, 299
AhlI ACTAGT 1 cut(s) 512
AjnI CCWGG 2 cut(s) 293, 407
AluBI AGCT 3 cut(s) 10, 24, 545
AluI AGCT 3 cut(s) 10, 24, 545
Alw26I GTCTC 3 cut(s) 99, 272, 560
AlwI GGATC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 389
ApeKI GCWGC 4 cut(s) 306, 527, 545, 606
AspLEI GCGC 1 cut(s) 606
AsuHPI GGTGA 3 cut(s) 136, 262, 658
AvaI CYCGRG 1 cut(s) 347
BanII GRGCYC 1 cut(s) 633
BbvI GCAGC 4 cut(s) 318, 514, 532, 593
BccI CCATC 2 cut(s) 371, 508
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 2 cut(s) 295, 409
BcoDI GTCTC 3 cut(s) 99, 272, 560
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 2 cut(s) 21, 513
BfmI CTRYAG 1 cut(s) 607
BisI GCNGC 4 cut(s) 307, 528, 546, 607
BlsI GCNGC 4 cut(s) 308, 529, 547, 608
BmcAI AGTACT 1 cut(s) 511
Bme1390I CCNGG 2 cut(s) 295, 409
BmeT110I CYCGRG 1 cut(s) 347
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 2 cut(s) 295, 409
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 2 cut(s) 213, 591
BmuI ACTGGG 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 525
BsaJI CCNNGG 3 cut(s) 13, 293, 294
BsaWI WCCGGW 2 cut(s) 259, 389
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 246, 274, 299
Bse1I ACTGG 2 cut(s) 130, 476
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 2 cut(s) 295, 409
BseDI CCNNGG 3 cut(s) 13, 293, 294
BseGI GGATG 2 cut(s) 178, 264
BseLI CCNNNNNNNGG 4 cut(s) 69, 246, 274, 299
BseMII CTCAG 2 cut(s) 113, 584
BseNI ACTGG 2 cut(s) 130, 476
BseXI GCAGC 4 cut(s) 318, 514, 532, 593
Bsh1236I CGCG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 260
BsiEI CGRYCG 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 2 cut(s) 260, 390
BslI CCNNNNNNNGG 4 cut(s) 69, 246, 274, 299
BsmAI GTCTC 3 cut(s) 99, 272, 560
BsmBI CGTCTC 2 cut(s) 99, 272
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 633
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 3 cut(s) 170, 215, 245
BspCNI CTCAG 2 cut(s) 112, 583
BspEI TCCGGA 1 cut(s) 389
BspFNI CGCG 1 cut(s) 245
BspLI GGNNCC 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 611
BspPI GGATC 1 cut(s) 25
BsrI ACTGG 2 cut(s) 130, 476
BssECI CCNNGG 3 cut(s) 13, 293, 294
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 2 cut(s) 295, 409
Bst4CI ACNGT 2 cut(s) 462, 556
BstDEI CTNAG 2 cut(s) 99, 570
BstDSI CCRYGG 1 cut(s) 13
BstEII GGTNACC 1 cut(s) 124
BstF5I GGATG 2 cut(s) 178, 264
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 3 cut(s) 99, 272, 560
BstMBI GATC 1 cut(s) 17
BstMCI CGRYCG 1 cut(s) 260
BstNI CCWGG 2 cut(s) 295, 409
BstNSI RCATGY 1 cut(s) 388
BstPI GGTNACC 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 293, 407
BstSFI CTRYAG 1 cut(s) 607
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 4 cut(s) 318, 514, 532, 593
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 178, 264
BtsIMutI CAGTG 1 cut(s) 373
CfoI GCGC 1 cut(s) 606
Csp6I GTAC 3 cut(s) 185, 463, 510
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 2 cut(s) 385, 663
CviJI RGCY 8 cut(s) 10, 24, 202, 407, 527, 545, 594, 631
CviKI_1 RGCY 8 cut(s) 10, 24, 202, 407, 527, 545, 594, 631
CviQI GTAC 3 cut(s) 185, 463, 510
DdeI CTNAG 2 cut(s) 99, 570
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 633
Eco57I CTGAAG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 347
Eco91I GGTNACC 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 293, 407
EcoT38I GRGCYC 1 cut(s) 633
Esp3I CGTCTC 2 cut(s) 99, 272
FaeI CATG 2 cut(s) 388, 666
FaiI YATR 9 cut(s) 137, 375, 386, 401, 456, 559, 583, 617, 664
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 2 cut(s) 384, 662
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 307, 528, 546, 607
FokI GGATG 2 cut(s) 185, 251
FriOI GRGCYC 1 cut(s) 633
Fsp4HI GCNGC 4 cut(s) 307, 528, 546, 607
FspBI CTAG 2 cut(s) 21, 513
GlaI GCGC 1 cut(s) 605
GluI GCNGC 4 cut(s) 307, 528, 546, 607
HapII CCGG 2 cut(s) 260, 390
HhaI GCGC 1 cut(s) 606
Hin1II CATG 2 cut(s) 388, 666
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HinfI GANTC 6 cut(s) 38, 97, 253, 345, 568, 659
HpaII CCGG 2 cut(s) 260, 390
HphI GGTGA 3 cut(s) 136, 262, 658
Hpy188I TCNGA 6 cut(s) 37, 102, 344, 565, 573, 600
Hpy188III TCNNGA 2 cut(s) 357, 390
Hpy99I CGWCG 3 cut(s) 314, 446, 470
HpyAV CCTTC 2 cut(s) 155, 293
HpyCH4III ACNGT 2 cut(s) 462, 556
HpyCH4IV ACGT 2 cut(s) 187, 465
HpyCH4V TGCA 4 cut(s) 4, 458, 482, 609
HpyF3I CTNAG 2 cut(s) 99, 570
HpySE526I ACGT 2 cut(s) 187, 465
Hsp92II CATG 2 cut(s) 388, 666
HspAI GCGC 1 cut(s) 604
Kpn2I TCCGGA 1 cut(s) 389
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 15
Lsp1109I GCAGC 4 cut(s) 318, 514, 532, 593
LweI GCATC 2 cut(s) 213, 591
MaeI CTAG 2 cut(s) 21, 513
MaeII ACGT 2 cut(s) 187, 465
MaeIII GTNAC 3 cut(s) 124, 148, 285
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 3 cut(s) 33, 339, 632
MfeI CAATTG 1 cut(s) 485
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 633
MluCI AATT 1 cut(s) 485
MlyI GAGTC 3 cut(s) 91, 339, 562
MroI TCCGGA 1 cut(s) 389
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 2 cut(s) 260, 390
MspR9I CCNGG 2 cut(s) 295, 409
MunI CAATTG 1 cut(s) 485
MvaI CCWGG 2 cut(s) 295, 409
MvnI CGCG 1 cut(s) 245
NdeII GATC 1 cut(s) 17
NlaIII CATG 2 cut(s) 388, 666
NlaIV GGNNCC 1 cut(s) 361
NmuCI GTSAC 2 cut(s) 124, 148
NspI RCATGY 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 347
PasI CCCWGGG 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 3 cut(s) 38, 253, 659
PkrI GCNGC 4 cut(s) 308, 529, 547, 608
PleI GAGTC 3 cut(s) 91, 339, 562
PpsI GAGTC 3 cut(s) 91, 339, 562
Psp6I CCWGG 2 cut(s) 293, 407
PspEI GGTNACC 1 cut(s) 124
PspGI CCWGG 2 cut(s) 293, 407
PspN4I GGNNCC 1 cut(s) 361
PspXI VCTCGAGB 1 cut(s) 347
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 3 cut(s) 186, 464, 511
RsaNI GTAC 3 cut(s) 185, 463, 510
RseI CAYNNNNRTG 1 cut(s) 368
SatI GCNGC 4 cut(s) 307, 528, 546, 607
Sau3AI GATC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 3 cut(s) 91, 339, 562
ScrFI CCNGG 2 cut(s) 295, 409
SduI GDGCHC 1 cut(s) 633
SetI ASST 9 cut(s) 12, 26, 79, 126, 166, 190, 429, 468, 547
SfaNI GCATC 2 cut(s) 213, 591
SfcI CTRYAG 1 cut(s) 607
Sfr274I CTCGAG 1 cut(s) 347
SlaI CTCGAG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 2 cut(s) 347, 540
SmoI CTYRAG 2 cut(s) 347, 540
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 1 cut(s) 485
SsiI CCGC 3 cut(s) 170, 215, 245
SspMI CTAG 2 cut(s) 21, 513
StyD4I CCNGG 2 cut(s) 293, 407
TaaI ACNGT 2 cut(s) 462, 556
TaiI ACGT 2 cut(s) 190, 468
TaqI TCGA 2 cut(s) 256, 348
TasI AATT 1 cut(s) 485
TatI WGTACW 1 cut(s) 509
TfiI GAWTC 3 cut(s) 38, 253, 659
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 124, 148
TseI GCWGC 4 cut(s) 306, 527, 545, 606
Tsp45I GTSAC 2 cut(s) 124, 148
TspDTI ATGAA 2 cut(s) 416, 651
TspGWI ACGGA 2 cut(s) 327, 459
TspRI CASTG 1 cut(s) 373
XceI RCATGY 1 cut(s) 388
XhoI CTCGAG 1 cut(s) 347
XspI CTAG 2 cut(s) 21, 513
ZrmI AGTACT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.