Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Forward (+)

72768506 .. 72769358

Gene Structure 853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0611300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCCGGAGTACTTAAACTGCAGCGTTTTATTGTTCCTGTACTCGTCCTGAGCTTCATCTTGCTATCTCTGGCCATTGAAGCCCGGCCGATGCATGAGCATGGCTCGAAGATTCATCGTCATCGTCATCAGTTTCACCACCACAAGGAGCTGCACAACCACAAGTACAATGGTCACAGGAAGGCTGTACCAAGCCCAGCAGGGGCATTTGGTCAAGGCTTTATTGATCTTCTGACCCTTTGGGGAGTCAAGAGCAGTGGTCCGAGTCCTGGTGCAGGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

94

Amino Acids

10.44

Weight (kDa)

10.67

Isoelectric Point (pI)

56.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	3 cut(s)	3, 72, 86
AfaI	GTAC	4 cut(s)	12, 42, 167, 189
AfiI	CCNNNNNNNGG	4 cut(s)	145, 202, 269, 275
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	2 cut(s)	54, 151
AluI	AGCT	2 cut(s)	54, 151
AoxI	GGCC	4 cut(s)	3, 72, 86, 277
ApeKI	GCWGC	2 cut(s)	22, 151
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	34, 138
BciT130I	CCWGG	1 cut(s)	270
BcnI	CCSGG	1 cut(s)	85
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	2 cut(s)	23, 152
BlsI	GCNGC	2 cut(s)	24, 153
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	85, 270
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmrFI	CCNGG	2 cut(s)	85, 270
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 202, 269, 275
BseBI	CCWGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	4 cut(s)	145, 202, 269, 275
BseMII	CTCAG	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	34, 138
BseYI	CCCAGC	1 cut(s)	196
BsgI	GTGCAG	1 cut(s)	137
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	4 cut(s)	5, 74, 88, 279
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	6, 85
BslI	CCNNNNNNNGG	4 cut(s)	145, 202, 269, 275
BsnI	GGCC	4 cut(s)	5, 74, 88, 279
Bsp143I	GATC	1 cut(s)	226
BspANI	GGCC	4 cut(s)	5, 74, 88, 279
BspCNI	CTCAG	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	24
BssMI	GATC	1 cut(s)	226
Bst2UI	CCWGG	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	273
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	83, 268
BstSFI	CTRYAG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	34, 138
BstZI	CGGCCG	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	5, 74, 88, 279
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	4 cut(s)	11, 41, 166, 188
CspCI	CAANNNNNGTGG	2 cut(s)	238, 273
CviAII	CATG	2 cut(s)	95, 101
CviQI	GTAC	4 cut(s)	11, 41, 166, 188
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	3 cut(s)	3, 72, 86
EagI	CGGCCG	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	268
EcoT22I	ATGCAT	1 cut(s)	96
FaeI	CATG	2 cut(s)	98, 104
FaiI	YATR	2 cut(s)	96, 102
FatI	CATG	2 cut(s)	94, 100
Fnu4HI	GCNGC	2 cut(s)	23, 152
Fsp4HI	GCNGC	2 cut(s)	23, 152
GluI	GCNGC	2 cut(s)	23, 152
GsaI	CCCAGC	1 cut(s)	200
HaeIII	GGCC	4 cut(s)	5, 74, 88, 279
HapII	CCGG	2 cut(s)	6, 85
Hin1II	CATG	2 cut(s)	98, 104
HinfI	GANTC	3 cut(s)	112, 246, 265
HpaII	CCGG	2 cut(s)	6, 85
HphI	GGTGA	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	234, 264
Hpy188III	TCNNGA	2 cut(s)	49, 250
HpyAV	CCTTC	1 cut(s)	175
HpyCH4V	TGCA	4 cut(s)	22, 94, 154, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	98, 104
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	2 cut(s)	34, 138
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	121, 221
MlsI	TGGCCA	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	255, 274
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	2 cut(s)	6, 85
MspR9I	CCNGG	2 cut(s)	85, 270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	98, 104
NmuCI	GTSAC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	24, 153
PleI	GAGTC	2 cut(s)	254, 273
PpsI	GAGTC	2 cut(s)	254, 273
Psp6I	CCWGG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	24
RsaI	GTAC	4 cut(s)	12, 42, 167, 189
RsaNI	GTAC	4 cut(s)	11, 41, 166, 188
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	2 cut(s)	23, 152
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	2 cut(s)	255, 274
ScrFI	CCNGG	2 cut(s)	85, 270
SetI	ASST	2 cut(s)	56, 153
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	83, 268
TaqI	TCGA	1 cut(s)	107
TatI	WGTACW	3 cut(s)	10, 40, 165
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	22, 151
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	2 cut(s)	46, 104
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	273
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.