Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

4213616 .. 4213984

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG049900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAAGGCCATAGTGGTTACCTCACCAGGAGGACCGGTCCTCCAAGTACAGGACGTGGAAGACCCCAAAATAAAAGACGACGAGGTCCTAGTCAAAGTCGAGGCCACGTCACTGAACCAGGCTGACAGCTTACAGCGGCTCGGCTTCTACCCATTACCTCCGGGGCTCCGGGTTCCAGCGAGTTACTGGGCCTGGAATGTTCTGGAACCATCGAGGCCGTCGGGGAACAAGTGTCACGCTGGAAAGCCGGCGATCAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

87

Amino Acids

9.45

Weight (kDa)

7.88

Isoelectric Point (pI)

56.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AciI	CCGC	1 cut(s)	136
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgeI	ACCGGT	1 cut(s)	34
AjiI	CACGTC	2 cut(s)	55, 108
AjnI	CCWGG	3 cut(s)	25, 117, 191
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
AoxI	GGCC	4 cut(s)	6, 102, 189, 215
AsiGI	ACCGGT	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	32, 37, 85, 189
AsuC2I	CCSGG	2 cut(s)	162, 170
AsuHPI	GGTGA	1 cut(s)	15
AvaII	GGWCC	3 cut(s)	32, 37, 85
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	66
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	3 cut(s)	27, 119, 193
BcnI	CCSGG	2 cut(s)	162, 170
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	5 cut(s)	27, 119, 162, 170, 193
Bme18I	GGWCC	3 cut(s)	32, 37, 85
BmgBI	CACGTC	2 cut(s)	55, 108
BmgT120I	GGNCC	4 cut(s)	32, 37, 85, 189
BmiI	GGNNCC	3 cut(s)	167, 174, 207
BmrFI	CCNGG	5 cut(s)	27, 119, 162, 170, 193
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	162, 170
BsaJI	CCNNGG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 24, 51, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	2 cut(s)	34, 247
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	3 cut(s)	27, 119, 193
BseDI	CCNNGG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	8, 104, 191, 217
BshTI	ACCGGT	1 cut(s)	34
BsiSI	CCGG	4 cut(s)	35, 161, 169, 248
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	4 cut(s)	8, 104, 191, 217
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	4 cut(s)	8, 104, 191, 217
BspLI	GGNNCC	3 cut(s)	167, 174, 207
BsrFI	RCCGGY	2 cut(s)	34, 247
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	2 cut(s)	34, 247
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	27, 119, 193
BstC8I	GCNNGC	1 cut(s)	249
BstEII	GGTNACC	1 cut(s)	16
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstNI	CCWGG	3 cut(s)	27, 119, 193
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	5 cut(s)	25, 117, 160, 168, 191
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	8, 104, 191, 217
BtrI	CACGTC	2 cut(s)	55, 108
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	249
Cfr10I	RCCGGY	2 cut(s)	34, 247
Cfr13I	GGNCC	4 cut(s)	32, 37, 85, 189
Csp6I	GTAC	1 cut(s)	47
CspAI	ACCGGT	1 cut(s)	34
CviQI	GTAC	1 cut(s)	47
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	3 cut(s)	32, 37, 85
Eco91I	GGTNACC	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	25, 117, 191
EcoT38I	GRGCYC	1 cut(s)	168
FaiI	YATR	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	4 cut(s)	8, 104, 191, 217
HapII	CCGG	4 cut(s)	35, 161, 169, 248
HpaII	CCGG	4 cut(s)	35, 161, 169, 248
HphI	GGTGA	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	1 cut(s)	203
Hpy99I	CGWCG	2 cut(s)	83, 223
HpyCH4IV	ACGT	2 cut(s)	54, 107
HpySE526I	ACGT	2 cut(s)	54, 107
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	2 cut(s)	54, 107
MaeIII	GTNAC	4 cut(s)	16, 108, 182, 233
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MboII	GAAGA	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	168
MnlI	CCTC	7 cut(s)	23, 31, 50, 76, 94, 168, 207
MroNI	GCCGGC	1 cut(s)	247
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	4 cut(s)	35, 161, 169, 248
MspR9I	CCNGG	5 cut(s)	27, 119, 162, 170, 193
MvaI	CCWGG	3 cut(s)	27, 119, 193
NaeI	GCCGGC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	162, 170
NdeII	GATC	1 cut(s)	252
NgoMIV	GCCGGC	1 cut(s)	247
NlaIV	GGNNCC	3 cut(s)	167, 174, 207
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	2 cut(s)	108, 233
PdiI	GCCGGC	1 cut(s)	249
PflFI	GACNNNGTC	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	85
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	3 cut(s)	25, 117, 191
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	3 cut(s)	25, 117, 191
PspN4I	GGNNCC	3 cut(s)	167, 174, 207
PspPI	GGNCC	4 cut(s)	32, 37, 85, 189
PspPPI	RGGWCCY	1 cut(s)	85
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	4 cut(s)	32, 37, 85, 189
ScrFI	CCNGG	5 cut(s)	27, 119, 162, 170, 193
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	6 cut(s)	23, 57, 87, 110, 131, 160
SinI	GGWCC	3 cut(s)	32, 37, 85
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	5 cut(s)	25, 117, 160, 168, 191
TaiI	ACGT	2 cut(s)	57, 110
TaqI	TCGA	2 cut(s)	99, 212
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	139
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	2 cut(s)	108, 233
Tsp45I	GTSAC	2 cut(s)	108, 233
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	3 cut(s)	32, 37, 85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.