Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

49205262 .. 49244509

Gene Structure 39248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025924

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGAGCAAGACCCCATTTCAAGCCGTCAAGTCCAGCTTCACTGACCGGAAGAAGGAGAAGGAAATGAAAGCCATAGTAAGGGAGGATCCGGGTGGACCGGAGGTCCTCCGAGTAATGCAAGTGCCTGAACCGGAAATCACGGACGATGAAGTCCTCATACGCGTGGCAGCCACGGCGCTGAACGGGCCTGACATAATCGAGAGGAGAGTGACGTACCCGCCGTCCAAGACTCAAAGCCCCATCTTAGGTCTCAAATGTGCAGGAACCATCGAGAAAGTCGGTCAAAATGTCAAACGCTGGCAAGTCGGCCAACAGGTTCATGGGGGCTCAGGTGGTATTGGAACATTTACAATTCAGTTAGCTAAACAGCGGAGAGTTAAAGTAATCGCCACAGCAGTTAGCGACGACCAGTTACGTGCTTGTGAGGAACTTGGAGCTGATGAGTGCATCGCTTTCAATCACAAGGACAAGGATAAGAACAAAGCAGAGAAATTAGTTGAAATAGTTAAAAGTAAAACTTATGGCAAAGGAGTGGATGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

183

Amino Acids

20.01

Weight (kDa)

9.06

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	49 - 108	7.3e-12	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	113 - 181	5.1e-11	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccII	CGCG	1 cut(s)	165
AciI	CCGC	2 cut(s)	221, 373
AclWI	GGATC	2 cut(s)	83, 96
AcoI	YGGCCR	1 cut(s)	310
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	55, 81, 248
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	3 cut(s)	23, 460, 503
AhdI	GACNNNNNGTC	1 cut(s)	104
AluBI	AGCT	3 cut(s)	39, 365, 440
AluI	AGCT	3 cut(s)	39, 365, 440
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	83, 96
AoxI	GGCC	2 cut(s)	188, 310
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	181
AspS9I	GGNCC	3 cut(s)	98, 106, 188
AsuC2I	CCSGG	1 cut(s)	93
AvaII	GGWCC	2 cut(s)	98, 106
BamHI	GGATCC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	332
BarI	GAAGNNNNNNTAC	2 cut(s)	144, 176
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	251, 278
BceAI	ACGGC	3 cut(s)	11, 192, 208
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	182
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	2 cut(s)	98, 106
BmeRI	GACNNNNNGTC	1 cut(s)	104
BmgT120I	GGNCC	3 cut(s)	98, 106, 188
BmiI	GGNNCC	2 cut(s)	90, 268
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	3 cut(s)	48, 100, 133
BsaXI	ACNNNNNCTCC	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 81, 248
Bse1I	ACTGG	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	1 cut(s)	544
BseLI	CCNNNNNNNGG	3 cut(s)	55, 81, 248
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	190, 312
BsiSI	CCGG	4 cut(s)	49, 92, 101, 134
BslI	CCNNNNNNNGG	3 cut(s)	55, 81, 248
BsmAI	GTCTC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	190, 312
Bso31I	GGTCTC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	2 cut(s)	221, 373
BspANI	GGCC	2 cut(s)	190, 312
BspCNI	CTCAG	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	90, 268
BspPI	GGATC	2 cut(s)	83, 96
BspTNI	GGTCTC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	88
BstBAI	YACGTR	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	2 cut(s)	247, 331
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	544
BstFNI	CGCG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 187
BstSCI	CCNGG	1 cut(s)	91
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	190, 312
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	302
CfoI	GCGC	1 cut(s)	181
Cfr13I	GGNCC	3 cut(s)	98, 106, 188
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	247, 331
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DrdI	GACNNNNNNGTC	1 cut(s)	152
DriI	GACNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	152
EaeI	YGGCCR	1 cut(s)	310
Eam1105I	GACNNNNNGTC	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	98, 106
EcoO109I	RGGNCCY	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	1 cut(s)	326
FaiI	YATR	5 cut(s)	77, 161, 197, 324, 525
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 505, 537
FatI	CATG	1 cut(s)	322
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	171
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	171
GlaI	GCGC	1 cut(s)	180
GluI	GCNGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	190, 312
HapII	CCGG	4 cut(s)	49, 92, 101, 134
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	4 cut(s)	49, 92, 101, 134
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	2 cut(s)	202, 274
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	49, 55
HpyCH4IV	ACGT	2 cut(s)	215, 418
HpyCH4V	TGCA	3 cut(s)	121, 263, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 187
HpyF3I	CTNAG	2 cut(s)	247, 331
HpySE526I	ACGT	2 cut(s)	215, 418
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	437
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	459
MaeII	ACGT	2 cut(s)	215, 418
MaeIII	GTNAC	2 cut(s)	211, 414
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	2 cut(s)	16, 64
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	2 cut(s)	354, 494
MluI	ACGCGT	1 cut(s)	163
MlyI	GAGTC	1 cut(s)	226
MnlI	CCTC	6 cut(s)	79, 97, 119, 167, 198, 421
MseI	TTAA	2 cut(s)	381, 510
MslI	CAYNNNNRTG	1 cut(s)	164
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	4 cut(s)	49, 92, 101, 134
MspR9I	CCNGG	1 cut(s)	93
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	176, 187
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	2 cut(s)	90, 268
NmuCI	GTSAC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	90, 268
PspPI	GGNCC	3 cut(s)	98, 106, 188
PspPPI	RGGWCCY	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	381, 510
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	3 cut(s)	98, 106, 188
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	9 cut(s)	41, 108, 218, 253, 321, 337, 367, 421, 442
SfaNI	GCATC	1 cut(s)	459
SinI	GGWCC	2 cut(s)	98, 106
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	354, 494
SsiI	CCGC	2 cut(s)	221, 373
StyD4I	CCNGG	1 cut(s)	91
TaiI	ACGT	2 cut(s)	218, 421
TaqI	TCGA	2 cut(s)	201, 273
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	2 cut(s)	354, 494
Tru1I	TTAA	2 cut(s)	381, 510
Tru9I	TTAA	2 cut(s)	381, 510
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	4 cut(s)	17, 83, 165, 311
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	49
VpaK11BI	GGWCC	2 cut(s)	98, 106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.