Rh5AG027800

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000394
Physical Location & Seq
Reverse (-)
1914402 .. 1917915
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG027800.1

Sequence Viewer

Length: 435 bp
ATGCATAGCTTTTCATACATCATTTCAGATTCATACAGCCTCTGGTGGTATATTGGAACATTTGCCATTCAGATTGCTAGACACCAAGGTGTAACTGTATTTGTCACAGCAGGTGACGGGGCAAAATTAAAGGCATGTAGGGATCTTGGAGCTGAATTATGCATTAATCATAACACAGAGGACTTTGCTGAACTGGTAATGCAGAAGACAGAAGGAAGAGCGTGTGCATTGCGGAACAGAACTCCAGAAATGAAAGCCCTAATTGTTAAGAAGGTGTTGAAGCATGTTTGGCCTGCAATAAGGAATGGCTATGTGAAAGCTTTCAACAACAATATCAAGGCTTTCACATTCAATCAAGCAGTAGAGGCGCATGTACTCATGGAGACTAGCAACTTTACTGGAAAGATTTTGCTTGTTCCAGGGACATTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

144

Amino Acids

16.13

Weight (kDa)

9.24

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 18 - 73 1.3e-10 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 101
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 150
AfaI GTAC 1 cut(s) 375
AgsI TTSAA 3 cut(s) 280, 325, 352
AjnI CCWGG 1 cut(s) 418
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 3 cut(s) 9, 152, 320
AluI AGCT 3 cut(s) 9, 152, 320
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 42
AoxI GGCC 1 cut(s) 290
AseI ATTAAT 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 2 cut(s) 78, 387
BfuAI ACCTGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 85, 419
Bse1I ACTGG 2 cut(s) 198, 403
Bse3DI GCAATG 1 cut(s) 227
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 85, 419
BseMI GCAATG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 198, 403
BshFI GGCC 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 232
BspANI GGCC 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 2 cut(s) 198, 403
BssECI CCNNGG 2 cut(s) 85, 419
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 294
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 289, 365
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 3 cut(s) 138, 287, 374
BstSCI CCNGG 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 292
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 42
CfoI GCGC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 374
CviAII CATG 4 cut(s) 135, 284, 371, 379
CviJI RGCY 8 cut(s) 9, 39, 152, 257, 292, 309, 320, 341
CviKI_1 RGCY 8 cut(s) 9, 39, 152, 257, 292, 309, 320, 341
CviQI GTAC 1 cut(s) 374
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 2 cut(s) 6, 164
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 4 cut(s) 138, 287, 374, 382
FatI CATG 4 cut(s) 134, 283, 370, 378
FspBI CTAG 2 cut(s) 78, 387
GlaI GCGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 292
HhaI GCGC 1 cut(s) 370
Hin1II CATG 4 cut(s) 138, 287, 374, 382
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 29
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 28, 72
Hpy188III TCNNGA 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 206, 265
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 4, 162, 202, 227, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 365
Hsp92II CATG 4 cut(s) 138, 287, 374, 382
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 1 cut(s) 142
LguI GCTCTTC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 7 cut(s) 28, 96, 179, 258, 306, 384, 405
MaeI CTAG 2 cut(s) 78, 387
MaeIII GTNAC 3 cut(s) 91, 103, 113
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 2 cut(s) 217, 228
MflI RGATCY 1 cut(s) 142
MluCI AATT 3 cut(s) 125, 155, 261
MnlI CCTC 3 cut(s) 50, 172, 358
Mph1103I ATGCAT 2 cut(s) 6, 164
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 3 cut(s) 128, 165, 267
MslI CAYNNNNRTG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 2 cut(s) 289, 365
NdeII GATC 1 cut(s) 142
NlaIII CATG 4 cut(s) 138, 287, 374, 382
NmuCI GTSAC 2 cut(s) 103, 113
NsiI ATGCAT 2 cut(s) 6, 164
NspI RCATGY 3 cut(s) 138, 287, 374
OliI CACNNNNGTG 1 cut(s) 87
PaqCI CACCTGC 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 3 cut(s) 128, 165, 267
Sau3AI GATC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 420
SetI ASST 6 cut(s) 11, 91, 115, 154, 276, 322
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 3 cut(s) 125, 155, 261
SsiI CCGC 1 cut(s) 232
SspMI CTAG 2 cut(s) 78, 387
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 97
TasI AATT 3 cut(s) 125, 155, 261
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 128, 165, 267
Tru9I TTAA 3 cut(s) 128, 165, 267
TseFI GTSAC 2 cut(s) 103, 113
Tsp45I GTSAC 2 cut(s) 103, 113
TspDTI ATGAA 2 cut(s) 21, 266
VspI ATTAAT 1 cut(s) 165
XceI RCATGY 3 cut(s) 138, 287, 374
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 2 cut(s) 78, 387
Zsp2I ATGCAT 2 cut(s) 6, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.