RLG00000031418

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
4977408 .. 4978977
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031418

Sequence Viewer

Length: 987 bp
ATGAAGGCCGTAGTGATATCAGTCCTAGGTGGACCCGAGGTCCTCCAACTACAACAAGTCGAAGACCCGGAACTCAAAGACGGCGAGGTCCTCATCAAAGTCGAGGCGGCGGCGCTGAACAAGCTCGACGCGTTTCAGAGGCAAGGAGTGTTCGCACCACCTCCGGGTGCTAGTCCCTACCCTGGTCTCGAATGTTCCGGAACCATCGAGGCCGTCGGAGAACACGTGTCACGCTGGAAAGTCGGCGATCAGGTGTGTGCTCTACTTAGTGGAGGAGGGTATGCCGAGAAGGTGGCTGTTCCGGCAGGACAGGTTCTTCCGGTTCCACCTGGTATTTCTTTGAAGGATGCTGCAAGCTTTCCCGAAGTGGCGTGCACTGTTTGGTCCACTATTTTTATGATTAGCCGGCTATCTTCCGGTGAAATACTTTTGGTAACTTCCTTACTGAAATCTGTCATACTATTTCATGTATGGCACAAAACTGGTCTTCACGTTTTTATGTATATTAATCTTGGATCATCAGGTAATGAAGAAAAGTTAGCAGCTTGTAAGGATCTTGGTGCTGATGTATGTATCAATTACAAGACAGAAGACTTTGTTACACGCGTAAAGGAAGAAACAGGTGGCAAAGGTGTTGATGTCATCTTGGATAGCCTTGGGCAAGCCTATTTTCAGTGTAACCTTGACAGCTTAAATTTTGATGGGAGGCTTTTTCTCATTGGGACAATGAGTGGCTCTGTCACAGAATTGGATCTCCGTGTGGTGCTTTCAAAGCGCCTTACCATCCAAGCTGCTGGTTTGCGAGTCAGAAGTCCAGAAAGCAAAGCAGTAATAATTAGGGAGGTGGAGGACCATGTGTGGCCTGCAATTGTGGCTGGCAAGGTGAAACCTGTGATCTACAAGCATTTCCCTTTGTCTGAAGCTGCAGAGGCTCACCAGTTATTGGAAAGTAGCCAGCATATTGGAAAGATTCTACTTTTTCCGTGA

Protein Analysis

329

Amino Acids

35.31

Weight (kDa)

5.67

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 26 - 109 3e-17 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 172 - 267 2.4e-21 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 186 - 326 7e-25 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 943
AccII CGCG 2 cut(s) 131, 606
AccIII TCCGGA 1 cut(s) 197
AciI CCGC 2 cut(s) 107, 110
AclWI GGATC 3 cut(s) 523, 561, 759
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 939
AcvI CACGTG 1 cut(s) 226
AfiI CCNNNNNNNGG 3 cut(s) 164, 182, 943
AflIII ACRYGT 4 cut(s) 129, 223, 225, 604
AgsI TTSAA 2 cut(s) 343, 771
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 2 cut(s) 181, 328
AluBI AGCT 6 cut(s) 124, 357, 545, 690, 791, 923
AluI AGCT 6 cut(s) 124, 357, 545, 690, 791, 923
Alw21I GWGCWC 2 cut(s) 262, 377
Alw26I GTCTC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 373
AlwI GGATC 3 cut(s) 523, 561, 759
Ama87I CYCGRG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 197
AoxI GGCC 3 cut(s) 6, 210, 860
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 4 cut(s) 350, 542, 791, 923
ApoI RAATTY 1 cut(s) 694
AseI ATTAAT 1 cut(s) 507
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 2 cut(s) 115, 777
AspS9I GGNCC 5 cut(s) 32, 40, 88, 384, 850
AsuC2I CCSGG 2 cut(s) 68, 165
AsuHPI GGTGA 3 cut(s) 431, 895, 926
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 5 cut(s) 32, 40, 88, 384, 850
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 226
BbsI GAAGAC 3 cut(s) 69, 479, 597
Bbv12I GWGCWC 2 cut(s) 262, 377
BbvI GCAGC 4 cut(s) 337, 554, 778, 910
BccI CCATC 3 cut(s) 212, 695, 791
BceAI ACGGC 2 cut(s) 97, 197
BciT130I CCWGG 2 cut(s) 183, 330
BcnI CCSGG 2 cut(s) 68, 165
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 2 cut(s) 26, 171
BfmI CTRYAG 1 cut(s) 924
BfoI RGCGCY 2 cut(s) 116, 778
BisI GCNGC 6 cut(s) 108, 111, 351, 543, 792, 924
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 6 cut(s) 109, 112, 352, 544, 793, 925
Bme1390I CCNGG 4 cut(s) 68, 165, 183, 330
Bme18I GGWCC 5 cut(s) 32, 40, 88, 384, 850
BmeRI GACNNNNNGTC 1 cut(s) 38
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 5 cut(s) 32, 40, 88, 384, 850
BmiI GGNNCC 3 cut(s) 34, 202, 324
BmrFI CCNGG 4 cut(s) 68, 165, 183, 330
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 3 cut(s) 69, 479, 597
BpuMI CCSGG 2 cut(s) 68, 165
BsaAI YACGTR 1 cut(s) 226
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 4 cut(s) 25, 36, 181, 655
BsaWI WCCGGW 3 cut(s) 197, 319, 416
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 182, 943
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 2 cut(s) 487, 937
BseAI TCCGGA 1 cut(s) 197
BseBI CCWGG 2 cut(s) 183, 330
BseDI CCNNGG 4 cut(s) 25, 36, 181, 655
BseGI GGATG 2 cut(s) 352, 783
BseLI CCNNNNNNNGG 3 cut(s) 164, 182, 943
BseNI ACTGG 2 cut(s) 487, 937
BseRI GAGGAG 1 cut(s) 288
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 4 cut(s) 337, 554, 778, 910
Bsh1236I CGCG 2 cut(s) 131, 606
BshFI GGCC 3 cut(s) 8, 212, 862
BsiHKAI GWGCWC 2 cut(s) 262, 377
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 7 cut(s) 68, 164, 198, 302, 320, 406, 417
BslFI GGGAC 2 cut(s) 159, 736
BslI CCNNNNNNNGG 3 cut(s) 164, 182, 943
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 2 cut(s) 159, 736
BsnI GGCC 3 cut(s) 8, 212, 862
Bso31I GGTCTC 1 cut(s) 191
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 262, 377
Bsp13I TCCGGA 1 cut(s) 197
Bsp143I GATC 5 cut(s) 247, 515, 553, 751, 894
BspACI CCGC 2 cut(s) 107, 110
BspANI GGCC 3 cut(s) 8, 212, 862
BspEI TCCGGA 1 cut(s) 197
BspFNI CGCG 2 cut(s) 131, 606
BspLI GGNNCC 3 cut(s) 34, 202, 324
BspMAI CTGCAG 1 cut(s) 928
BspPI GGATC 3 cut(s) 523, 561, 759
BspTNI GGTCTC 1 cut(s) 191
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 2 cut(s) 487, 937
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 4 cut(s) 25, 36, 181, 655
BssMI GATC 5 cut(s) 247, 515, 553, 751, 894
BssT1I CCWWGG 2 cut(s) 25, 655
Bst2UI CCWGG 2 cut(s) 183, 330
Bst4CI ACNGT 1 cut(s) 379
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 7 cut(s) 355, 373, 407, 663, 864, 877, 956
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 352, 783
BstFNI CGCG 2 cut(s) 131, 606
BstH2I RGCGCY 2 cut(s) 116, 778
BstHHI GCGC 2 cut(s) 115, 777
BstKTI GATC 5 cut(s) 250, 518, 556, 754, 897
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 5 cut(s) 247, 515, 553, 751, 894
BstMWI GCNNNNNNNGC 5 cut(s) 121, 302, 772, 872, 929
BstNI CCWGG 2 cut(s) 183, 330
BstSCI CCNGG 4 cut(s) 66, 163, 181, 328
BstSFI CTRYAG 1 cut(s) 924
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 2 cut(s) 131, 606
BstV1I GCAGC 4 cut(s) 337, 554, 778, 910
BstV2I GAAGAC 3 cut(s) 69, 479, 597
BstX2I RGATCY 2 cut(s) 553, 751
BstXI CCANNNNNNTGG 2 cut(s) 794, 962
BstYI RGATCY 2 cut(s) 553, 751
BsuRI GGCC 3 cut(s) 8, 212, 862
BtsCI GGATG 2 cut(s) 352, 783
BtsIMutI CAGTG 2 cut(s) 375, 680
Cac8I GCNNGC 7 cut(s) 355, 373, 407, 663, 864, 877, 956
CfoI GCGC 2 cut(s) 115, 777
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 5 cut(s) 32, 40, 88, 384, 850
CseI GACGC 1 cut(s) 137
CsiI ACCWGGT 1 cut(s) 328
CviAII CATG 2 cut(s) 467, 854
DdeI CTNAG 1 cut(s) 266
DpnI GATC 5 cut(s) 249, 517, 555, 753, 896
DpnII GATC 5 cut(s) 247, 515, 553, 751, 894
DrdI GACNNNNNNGTC 1 cut(s) 86
DriI GACNNNNNGTC 1 cut(s) 38
DseDI GACNNNNNNGTC 1 cut(s) 86
Eam1105I GACNNNNNGTC 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 25, 655
Eco31I GGTCTC 1 cut(s) 191
Eco32I GATATC 1 cut(s) 18
Eco47I GGWCC 5 cut(s) 32, 40, 88, 384, 850
Eco57I CTGAAG 1 cut(s) 939
Eco72I CACGTG 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 35
EcoO109I RGGNCCY 2 cut(s) 40, 88
EcoRII CCWGG 2 cut(s) 181, 328
EcoRV GATATC 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 25, 655
ErhI CCWWGG 2 cut(s) 25, 655
FaeI CATG 2 cut(s) 470, 857
FaqI GGGAC 2 cut(s) 159, 736
FatI CATG 2 cut(s) 466, 853
Fnu4HI GCNGC 6 cut(s) 108, 111, 351, 543, 792, 924
FokI GGATG 2 cut(s) 359, 770
Fsp4HI GCNGC 6 cut(s) 108, 111, 351, 543, 792, 924
FspBI CTAG 2 cut(s) 26, 171
GlaI GCGC 2 cut(s) 114, 776
GluI GCNGC 6 cut(s) 108, 111, 351, 543, 792, 924
HaeII RGCGCY 2 cut(s) 116, 778
HaeIII GGCC 3 cut(s) 8, 212, 862
HapII CCGG 7 cut(s) 68, 164, 198, 302, 320, 406, 417
HgaI GACGC 1 cut(s) 137
HhaI GCGC 2 cut(s) 115, 777
Hin1II CATG 2 cut(s) 470, 857
Hin6I GCGC 2 cut(s) 113, 775
HinP1I GCGC 2 cut(s) 113, 775
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 2 cut(s) 804, 970
HpaII CCGG 7 cut(s) 68, 164, 198, 302, 320, 406, 417
HphI GGTGA 3 cut(s) 431, 895, 926
Hpy166II GTNNAC 3 cut(s) 32, 375, 387
Hpy188I TCNGA 4 cut(s) 138, 218, 809, 919
Hpy188III TCNNGA 4 cut(s) 188, 198, 362, 815
Hpy8I GTNNAC 3 cut(s) 32, 375, 387
Hpy99I CGWCG 2 cut(s) 131, 218
HpyAV CCTTC 2 cut(s) 283, 337
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 225, 492
HpyCH4V TGCA 4 cut(s) 353, 375, 866, 926
HpyF10VI GCNNNNNNNGC 5 cut(s) 121, 302, 772, 872, 929
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 2 cut(s) 225, 492
Hsp92II CATG 2 cut(s) 470, 857
HspAI GCGC 2 cut(s) 113, 775
Kpn2I TCCGGA 1 cut(s) 197
KroI GCCGGC 1 cut(s) 405
KroNI GCCGGC 1 cut(s) 407
Kzo9I GATC 5 cut(s) 247, 515, 553, 751, 894
Lsp1109I GCAGC 4 cut(s) 337, 554, 778, 910
LweI GCATC 1 cut(s) 337
MabI ACCWGGT 1 cut(s) 328
MaeI CTAG 2 cut(s) 26, 171
MaeII ACGT 2 cut(s) 225, 492
MaeIII GTNAC 5 cut(s) 228, 433, 598, 677, 739
MalI GATC 5 cut(s) 249, 517, 555, 753, 896
MboI GATC 5 cut(s) 247, 515, 553, 751, 894
MboII GAAGA 7 cut(s) 74, 308, 405, 479, 542, 602, 626
MfeI CAATTG 1 cut(s) 867
MflI RGATCY 2 cut(s) 553, 751
MhlI GDGCHC 2 cut(s) 262, 377
MluCI AATT 5 cut(s) 577, 694, 746, 834, 867
MluI ACGCGT 2 cut(s) 129, 604
MlyI GAGTC 1 cut(s) 813
MmeI TCCRAC 2 cut(s) 70, 196
MroI TCCGGA 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 405
MseI TTAA 2 cut(s) 507, 692
MspI CCGG 7 cut(s) 68, 164, 198, 302, 320, 406, 417
MspR9I CCNGG 4 cut(s) 68, 165, 183, 330
MunI CAATTG 1 cut(s) 867
MvaI CCWGG 2 cut(s) 183, 330
MvnI CGCG 2 cut(s) 131, 606
MwoI GCNNNNNNNGC 5 cut(s) 121, 302, 772, 872, 929
NaeI GCCGGC 1 cut(s) 407
NciI CCSGG 2 cut(s) 68, 165
NdeII GATC 5 cut(s) 247, 515, 553, 751, 894
NgoMIV GCCGGC 1 cut(s) 405
NlaIII CATG 2 cut(s) 470, 857
NlaIV GGNNCC 3 cut(s) 34, 202, 324
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 228, 739
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 970
PflMI CCANNNNNTGG 1 cut(s) 943
PkrI GCNGC 6 cut(s) 109, 112, 352, 544, 793, 925
PleI GAGTC 1 cut(s) 812
PmaCI CACGTG 1 cut(s) 226
PmlI CACGTG 1 cut(s) 226
PpsI GAGTC 1 cut(s) 812
Ppu21I YACGTR 1 cut(s) 226
PpuMI RGGWCCY 2 cut(s) 40, 88
PshBI ATTAAT 1 cut(s) 507
Psp5II RGGWCCY 2 cut(s) 40, 88
Psp6I CCWGG 2 cut(s) 181, 328
PspCI CACGTG 1 cut(s) 226
PspGI CCWGG 2 cut(s) 181, 328
PspN4I GGNNCC 3 cut(s) 34, 202, 324
PspPI GGNCC 5 cut(s) 32, 40, 88, 384, 850
PspPPI RGGWCCY 2 cut(s) 40, 88
PstI CTGCAG 1 cut(s) 928
PsuI RGATCY 2 cut(s) 553, 751
SaqAI TTAA 2 cut(s) 507, 692
SatI GCNGC 6 cut(s) 108, 111, 351, 543, 792, 924
Sau3AI GATC 5 cut(s) 247, 515, 553, 751, 894
Sau96I GGNCC 5 cut(s) 32, 40, 88, 384, 850
SchI GAGTC 1 cut(s) 813
ScrFI CCNGG 4 cut(s) 68, 165, 183, 330
SduI GDGCHC 2 cut(s) 262, 377
SexAI ACCWGGT 1 cut(s) 328
SfaNI GCATC 1 cut(s) 337
SfcI CTRYAG 1 cut(s) 924
SinI GGWCC 5 cut(s) 32, 40, 88, 384, 850
Sse9I AATT 5 cut(s) 577, 694, 746, 834, 867
SsiI CCGC 2 cut(s) 107, 110
SspMI CTAG 2 cut(s) 26, 171
StyD4I CCNGG 4 cut(s) 66, 163, 181, 328
StyI CCWWGG 2 cut(s) 25, 655
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 2 cut(s) 228, 495
TaqI TCGA 5 cut(s) 60, 102, 126, 189, 207
TasI AATT 5 cut(s) 577, 694, 746, 834, 867
TauI GCSGC 2 cut(s) 110, 113
TfiI GAWTC 1 cut(s) 970
Tru1I TTAA 2 cut(s) 507, 692
Tru9I TTAA 2 cut(s) 507, 692
TscAI CASTG 2 cut(s) 382, 680
TseFI GTSAC 2 cut(s) 228, 739
TseI GCWGC 4 cut(s) 350, 542, 791, 923
Tsp45I GTSAC 2 cut(s) 228, 739
TspDTI ATGAA 3 cut(s) 17, 455, 543
TspGWI ACGGA 2 cut(s) 746, 972
TspRI CASTG 2 cut(s) 382, 680
Van91I CCANNNNNTGG 1 cut(s) 943
VneI GTGCAC 1 cut(s) 373
VpaK11BI GGWCC 5 cut(s) 32, 40, 88, 384, 850
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 1 cut(s) 694
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 2 cut(s) 26, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.