Rw5G005270

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
5506876 .. 5509475
2600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G005270.1

Sequence Viewer

Length: 978 bp
ATGAAGGCGGTAGTGGTAACAACCCCCGGCGGACCGGAGGTCCTCCGAGTACAAGAAGTTGAAGACCCAGAAATCAAAGACGACGAGGTTCTTATCAAAGTCGAGGCCACCGCGCTGAACCGAGCCGACACTATTCAGAGAAAGGGACTCTACCCACCACCTCCGGGGTCCAGTCAGTACCTCGGCCTCGAATGTTCTGGAACCATCAAGGCCGTCGGGAAACACGTGTCGAGATGGAAAGTGGGCGATCAGGTGTGTGCTTTACTTAGTGGAGGAGGGTATGCTGAGAAGGTGGCTGTTCCGGCGGGACAGGTTCTTCCGGTCCCACCTGGGATTTCTTTGAAGGATGCTGCGAGCTTTCCGGAGGTGGCGTGCACTGTCTGGTCCACTATTTTTATGATGAGCCGGCTATCTTCGGGCGAAACACTTTTGGTTCATGGGGGTTCCAGCGGAATTGGTACATTTGCTATTCAAATCGCTAAATACCGGGGAGTAAGGGTCTTTGTCACAGCAGGTAGTGAGGAAAAGTTAGCAGCTTGTAAGGAGCTTGGGGCTGACGTGGGTATCAATTACAAGACGGAGGACTTTGTTACACGGGTAAAGGAAGAGACGGGCGGCAAAGGTGTTGATGTCATCTTGGATAGCATTGGGCAAGCCTATTTTAAACGTAACCTTGACAGCTTAGCTTTTGATGGGAGGCTTTTTGTCATTGGCACCCTGAGTGGTGCTGTCTCAGAAATAGATCTTCGTGTGGTGCTTTCAAAGCGCCTCACCATCCAAGCGGCTGGTTTGCGATACAGAAGTCCAGAAAACAAAGCAGTAATTGTTAGAGAGGTGGAGGAGAATGTGTGGCCTGCAATTGTGGCTGGCAAGGTCAAAACTGTTGTCTACAAGCGTTTCCCATTATCTGAAGCTGCTGAGGCTCACCAGCTAATGGAAACTAGCCAGCATATTGGAAAGATACTACTTTTTCCGTGA

Protein Analysis

325

Amino Acids

34.86

Weight (kDa)

7.63

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 27 - 109 1.6e-17 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 151 - 266 1.2e-31 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 183 - 323 3.6e-25 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 713
AccB7I CCANNNNNTGG 1 cut(s) 934
AccI GTMKAC 1 cut(s) 888
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 7 cut(s) 8, 30, 111, 305, 450, 615, 782
AcuI CTGAAG 1 cut(s) 930
AcvI CACGTG 1 cut(s) 226
AfaI GTAC 3 cut(s) 51, 179, 460
AfiI CCNNNNNNNGG 2 cut(s) 164, 934
AflIII ACRYGT 2 cut(s) 223, 225
AgsI TTSAA 4 cut(s) 62, 343, 473, 762
AhdI GACNNNNNGTC 1 cut(s) 38
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 7 cut(s) 357, 536, 547, 681, 686, 914, 931
AluI AGCT 7 cut(s) 357, 536, 547, 681, 686, 914, 931
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 2 cut(s) 602, 736
Alw44I GTGCAC 1 cut(s) 373
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 4 cut(s) 105, 184, 210, 851
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 3 cut(s) 350, 533, 914
ArsI GACNNNNNNTTYG 2 cut(s) 870, 902
AspLEI GCGC 2 cut(s) 115, 768
AspS9I GGNCC 5 cut(s) 32, 40, 168, 322, 384
AsuC2I CCSGG 3 cut(s) 27, 165, 488
AsuHPI GGTGA 2 cut(s) 763, 917
AvaII GGWCC 5 cut(s) 32, 40, 168, 322, 384
BaeGI GKGCMC 1 cut(s) 377
BaeI ACNNNNGTAYC 4 cut(s) 547, 580, 787, 820
BanI GGYRCC 1 cut(s) 713
BbrPI CACGTG 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 377
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 3 cut(s) 337, 545, 901
BccI CCATC 4 cut(s) 212, 228, 686, 782
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 3 cut(s) 27, 165, 488
BcoDI GTCTC 2 cut(s) 602, 736
BfaI CTAG 1 cut(s) 942
BfoI RGCGCY 1 cut(s) 769
BfuAI ACCTGC 1 cut(s) 503
BglII AGATCT 1 cut(s) 742
BisI GCNGC 5 cut(s) 351, 534, 616, 783, 915
BlpI GCTNAGC 1 cut(s) 682
BlsI GCNGC 5 cut(s) 352, 535, 617, 784, 916
Bme1390I CCNGG 4 cut(s) 27, 165, 330, 488
Bme18I GGWCC 5 cut(s) 32, 40, 168, 322, 384
BmeRI GACNNNNNGTC 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 5 cut(s) 32, 40, 168, 322, 384
BmiI GGNNCC 5 cut(s) 169, 202, 324, 445, 715
BmrFI CCNGG 4 cut(s) 27, 165, 330, 488
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 1 cut(s) 918
Bpu1102I GCTNAGC 1 cut(s) 682
BpuMI CCSGG 3 cut(s) 27, 165, 488
BsaAI YACGTR 1 cut(s) 226
BsaJI CCNNGG 5 cut(s) 25, 164, 181, 329, 487
BsaWI WCCGGW 3 cut(s) 34, 319, 361
BsaXI ACNNNNNCTCC 6 cut(s) 356, 386, 483, 513, 833, 863
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 934
Bse118I RCCGGY 1 cut(s) 405
Bse1I ACTGG 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 5 cut(s) 25, 164, 181, 329, 487
BseGI GGATG 2 cut(s) 352, 774
BseLI CCNNNNNNNGG 2 cut(s) 164, 934
BseMII CTCAG 4 cut(s) 276, 710, 747, 909
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 288, 854
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 3 cut(s) 337, 545, 901
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 4 cut(s) 107, 186, 212, 853
BshNI GGYRCC 1 cut(s) 713
BsiHKAI GWGCWC 1 cut(s) 377
BsiSI CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
BslFI GGGAC 3 cut(s) 159, 308, 321
BslI CCNNNNNNNGG 2 cut(s) 164, 934
BsmAI GTCTC 2 cut(s) 602, 736
BsmBI CGTCTC 1 cut(s) 602
BsmFI GGGAC 3 cut(s) 159, 308, 321
BsnI GGCC 4 cut(s) 107, 186, 212, 853
Bsp1286I GDGCHC 1 cut(s) 377
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 2 cut(s) 247, 742
Bsp1720I GCTNAGC 1 cut(s) 682
BspACI CCGC 7 cut(s) 8, 30, 111, 305, 450, 615, 782
BspANI GGCC 4 cut(s) 107, 186, 212, 853
BspCNI CTCAG 4 cut(s) 277, 711, 746, 910
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 5 cut(s) 169, 202, 324, 445, 715
BspMI ACCTGC 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 713
BsrFI RCCGGY 1 cut(s) 405
BsrI ACTGG 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 405
BssECI CCNNGG 5 cut(s) 25, 164, 181, 329, 487
BssMI GATC 2 cut(s) 247, 742
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 379, 883
Bst6I CTCTTC 1 cut(s) 600
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 7 cut(s) 355, 373, 407, 654, 855, 868, 947
BstDEI CTNAG 6 cut(s) 266, 285, 682, 719, 733, 918
BstF5I GGATG 2 cut(s) 352, 774
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 769
BstHHI GCGC 2 cut(s) 115, 768
BstKTI GATC 2 cut(s) 250, 745
BstMAI GTCTC 2 cut(s) 602, 736
BstMBI GATC 2 cut(s) 247, 742
BstMWI GCNNNNNNNGC 4 cut(s) 302, 763, 863, 920
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 4 cut(s) 25, 163, 328, 486
BstSLI GKGCMC 1 cut(s) 377
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 337, 545, 901
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 742
BstXI CCANNNNNNTGG 2 cut(s) 785, 953
BstYI RGATCY 1 cut(s) 742
BsuRI GGCC 4 cut(s) 107, 186, 212, 853
BtrI CACGTC 1 cut(s) 559
BtsCI GGATG 2 cut(s) 352, 774
BtsIMutI CAGTG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 7 cut(s) 355, 373, 407, 654, 855, 868, 947
CfoI GCGC 2 cut(s) 115, 768
Cfr10I RCCGGY 1 cut(s) 405
Cfr13I GGNCC 5 cut(s) 32, 40, 168, 322, 384
CpoI CGGWCCG 1 cut(s) 32
Csp6I GTAC 3 cut(s) 50, 178, 459
CspI CGGWCCG 1 cut(s) 32
CviAII CATG 1 cut(s) 437
CviQI GTAC 3 cut(s) 50, 178, 459
DdeI CTNAG 6 cut(s) 266, 285, 682, 719, 733, 918
DpnI GATC 2 cut(s) 249, 744
DpnII GATC 2 cut(s) 247, 742
DraI TTTAAA 1 cut(s) 664
DriI GACNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 600
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 600
EciI GGCGGA 1 cut(s) 45
Eco47I GGWCC 5 cut(s) 32, 40, 168, 322, 384
Eco57I CTGAAG 1 cut(s) 930
Eco72I CACGTG 1 cut(s) 226
EcoO109I RGGNCCY 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 602
FaeI CATG 1 cut(s) 440
FaiI YATR 4 cut(s) 282, 398, 438, 951
FaqI GGGAC 3 cut(s) 159, 308, 321
FatI CATG 1 cut(s) 436
FauI CCCGC 1 cut(s) 298
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 5 cut(s) 351, 534, 616, 783, 915
FokI GGATG 2 cut(s) 359, 761
Fsp4HI GCNGC 5 cut(s) 351, 534, 616, 783, 915
FspBI CTAG 1 cut(s) 942
GlaI GCGC 2 cut(s) 114, 767
GluI GCNGC 5 cut(s) 351, 534, 616, 783, 915
HaeII RGCGCY 1 cut(s) 769
HaeIII GGCC 4 cut(s) 107, 186, 212, 853
HapII CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
HhaI GCGC 2 cut(s) 115, 768
Hin1II CATG 1 cut(s) 440
Hin6I GCGC 2 cut(s) 113, 766
HinP1I GCGC 2 cut(s) 113, 766
HinfI GANTC 1 cut(s) 147
HpaII CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
HphI GGTGA 2 cut(s) 763, 917
Hpy166II GTNNAC 3 cut(s) 375, 387, 889
Hpy188I TCNGA 4 cut(s) 47, 138, 736, 910
Hpy188III TCNNGA 5 cut(s) 198, 217, 231, 362, 806
Hpy8I GTNNAC 3 cut(s) 375, 387, 889
Hpy99I CGWCG 2 cut(s) 86, 218
HpyAV CCTTC 2 cut(s) 283, 337
HpyCH4III ACNGT 2 cut(s) 379, 883
HpyCH4IV ACGT 3 cut(s) 225, 558, 667
HpyCH4V TGCA 2 cut(s) 375, 857
HpyF10VI GCNNNNNNNGC 4 cut(s) 302, 763, 863, 920
HpyF3I CTNAG 6 cut(s) 266, 285, 682, 719, 733, 918
HpySE526I ACGT 3 cut(s) 225, 558, 667
Hsp92II CATG 1 cut(s) 440
HspAI GCGC 2 cut(s) 113, 766
Kpn2I TCCGGA 1 cut(s) 361
KroI GCCGGC 1 cut(s) 405
KroNI GCCGGC 1 cut(s) 407
Kzo9I GATC 2 cut(s) 247, 742
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 3 cut(s) 337, 545, 901
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 942
MaeII ACGT 3 cut(s) 225, 558, 667
MaeIII GTNAC 4 cut(s) 16, 505, 589, 668
MalI GATC 2 cut(s) 249, 744
MboI GATC 2 cut(s) 247, 742
MboII GAAGA 5 cut(s) 74, 308, 405, 617, 737
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 4 cut(s) 453, 568, 822, 858
MlyI GAGTC 1 cut(s) 141
MroI TCCGGA 1 cut(s) 361
MroNI GCCGGC 1 cut(s) 405
MseI TTAA 1 cut(s) 663
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 8 cut(s) 27, 35, 164, 302, 320, 362, 406, 487
MspR9I CCNGG 4 cut(s) 27, 165, 330, 488
MunI CAATTG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 302, 763, 863, 920
NaeI GCCGGC 1 cut(s) 407
NciI CCSGG 3 cut(s) 27, 165, 488
NdeII GATC 2 cut(s) 247, 742
NgoMIV GCCGGC 1 cut(s) 405
NlaIII CATG 1 cut(s) 440
NlaIV GGNNCC 5 cut(s) 169, 202, 324, 445, 715
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 934
PkrI GCNGC 5 cut(s) 352, 535, 617, 784, 916
PleI GAGTC 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 226
PmlI CACGTG 1 cut(s) 226
PpsI GAGTC 1 cut(s) 141
Ppu21I YACGTR 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 328
PspCI CACGTG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 5 cut(s) 169, 202, 324, 445, 715
PspPI GGNCC 5 cut(s) 32, 40, 168, 322, 384
PspPPI RGGWCCY 1 cut(s) 40
PsuI RGATCY 1 cut(s) 742
RsaI GTAC 3 cut(s) 51, 179, 460
RsaNI GTAC 3 cut(s) 50, 178, 459
Rsr2I CGGWCCG 1 cut(s) 32
RsrII CGGWCCG 1 cut(s) 32
SaqAI TTAA 1 cut(s) 663
SatI GCNGC 5 cut(s) 351, 534, 616, 783, 915
Sau3AI GATC 2 cut(s) 247, 742
Sau96I GGNCC 5 cut(s) 32, 40, 168, 322, 384
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 4 cut(s) 27, 165, 330, 488
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 5 cut(s) 32, 40, 168, 322, 384
Sse9I AATT 4 cut(s) 453, 568, 822, 858
SsiI CCGC 7 cut(s) 8, 30, 111, 305, 450, 615, 782
SspMI CTAG 1 cut(s) 942
StyD4I CCNGG 4 cut(s) 25, 163, 328, 486
TaaI ACNGT 2 cut(s) 379, 883
TaiI ACGT 3 cut(s) 228, 561, 670
TaqI TCGA 3 cut(s) 102, 189, 230
TasI AATT 4 cut(s) 453, 568, 822, 858
TatI WGTACW 1 cut(s) 49
TauI GCSGC 2 cut(s) 618, 785
Tru1I TTAA 1 cut(s) 663
Tru9I TTAA 1 cut(s) 663
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 3 cut(s) 350, 533, 914
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 17, 425
TspGWI ACGGA 2 cut(s) 593, 963
TspRI CASTG 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 934
VneI GTGCAC 1 cut(s) 373
VpaK11BI GGWCC 5 cut(s) 32, 40, 168, 322, 384
XmiI GTMKAC 1 cut(s) 888
XspI CTAG 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.