Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

4192568 .. 4193888

Gene Structure 1321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28783

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAGGCCACAGTGGTTACCTCACCAGGCGGACCGGAGGTCCTCCAAGTACGGGAAGTGGAAGACCCCAAAATAAAAGACTACGAGGTCCTAGTCAAAGTCGAGGCCACGTCACTGAACCAGGCCGACAGCTTACAGCGGCTTGGCTTCTACCCACCACCTCCGGGTTGCAGCGAGTTACTGGGCCTGGAATGTTCTGGAACCATCGAGGCCGTCGGGAGACAAGTGTCACGCTGGAAAGCCGGTGATCAGGTGTGTGCTGTTCTTACGGGAGGAGGCTATGCCGAGAAGGTGGCTGTTCCGGCTGGACAAATTCTTCCACTCCCACCCGGTATTTCTTTGAAGGATGCAGCTAGTCTCCCAGAGGTGGCATGCACTGTTTGGTCGACTGTTTTCACGACGAGTGTTGATGTCATCTTGGATATCCTTGGGGCAGCCTATTTTCAGCGAAACCTTGACGCTTTAAACTTTGATGGGAGGCTTTTCGTGATTGGGACCATGGGTGGTTTAGTTACAGAATTGGATCTTCGTGTTGTGCTTGCGAAGCGCCTCACCATCCAAGGTACTAGAATTTGTTTCCCCTTTTCTTTGCAAGAGGTTTATGACCTTTTGACCTTTTGTTTAACATGCAACATCTCTATCCTTTCGTGTTTGTGCATGCAGCGGCTGGCTTGCGATCTAGAAGTCGAGAAAAACAAAGCATTCATAGTGAGTGAGACAGAGAAAAATGTATGGTCTGCAATTGCGGCCGGCAAGGTGAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

255

Amino Acids

27.49

Weight (kDa)

5.09

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	27 - 109	3.6e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	134 - 203	3e-08	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	4 cut(s)	30, 139, 664, 746
AclWI	GGATC	1 cut(s)	531
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	2 cut(s)	312, 570
AfaI	GTAC	2 cut(s)	51, 565
AfiI	CCNNNNNNNGG	3 cut(s)	52, 164, 367
AgsI	TTSAA	1 cut(s)	343
AhdI	GACNNNNNGTC	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	3 cut(s)	25, 120, 186
AluBI	AGCT	2 cut(s)	132, 353
AluI	AGCT	2 cut(s)	132, 353
Alw26I	GTCTC	3 cut(s)	214, 362, 710
AlwI	GGATC	1 cut(s)	531
AlwNI	CAGNNNCTG	1 cut(s)	667
AoxI	GGCC	6 cut(s)	6, 105, 123, 184, 210, 747
ApeKI	GCWGC	4 cut(s)	171, 350, 434, 661
ApoI	RAATTY	2 cut(s)	312, 570
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	5 cut(s)	32, 40, 88, 184, 495
AsuC2I	CCSGG	2 cut(s)	165, 330
AsuHPI	GGTGA	3 cut(s)	15, 257, 544
AvaII	GGWCC	4 cut(s)	32, 40, 88, 495
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	183, 362, 446, 673
BccI	CCATC	3 cut(s)	212, 467, 563
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	3 cut(s)	27, 122, 188
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	2 cut(s)	165, 330
BcoDI	GTCTC	3 cut(s)	214, 362, 710
BfaI	CTAG	4 cut(s)	92, 354, 567, 680
BfoI	RGCGCY	1 cut(s)	550
BisI	GCNGC	7 cut(s)	140, 172, 351, 435, 662, 665, 747
BlsI	GCNGC	7 cut(s)	141, 173, 352, 436, 663, 666, 748
Bme1390I	CCNGG	5 cut(s)	27, 122, 165, 188, 330
Bme18I	GGWCC	4 cut(s)	32, 40, 88, 495
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	5 cut(s)	32, 40, 88, 184, 495
BmiI	GGNNCC	2 cut(s)	202, 496
BmrFI	CCNGG	5 cut(s)	27, 122, 165, 188, 330
BmrI	ACTGGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	191
BoxI	GACNNNNGTC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	165, 330
BsaJI	CCNNGG	3 cut(s)	427, 498, 559
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 164, 367
Bse118I	RCCGGY	2 cut(s)	242, 749
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	3 cut(s)	27, 122, 188
BseDI	CCNNGG	3 cut(s)	427, 498, 559
BseGI	GGATG	2 cut(s)	352, 555
BseLI	CCNNNNNNNGG	3 cut(s)	52, 164, 367
BseNI	ACTGG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	288
BseX3I	CGGCCG	1 cut(s)	747
BseXI	GCAGC	4 cut(s)	183, 362, 446, 673
Bsh1285I	CGRYCG	1 cut(s)	750
BshFI	GGCC	6 cut(s)	8, 107, 125, 186, 212, 749
BsiEI	CGRYCG	1 cut(s)	750
BsiSI	CCGG	6 cut(s)	35, 164, 243, 302, 330, 750
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	3 cut(s)	52, 164, 367
BsmAI	GTCTC	3 cut(s)	214, 362, 710
BsmFI	GGGAC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	6 cut(s)	8, 107, 125, 186, 212, 749
Bsp143I	GATC	3 cut(s)	247, 523, 676
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	4 cut(s)	30, 139, 664, 746
BspANI	GGCC	6 cut(s)	8, 107, 125, 186, 212, 749
BspLI	GGNNCC	2 cut(s)	202, 496
BspPI	GGATC	1 cut(s)	531
BsrFI	RCCGGY	2 cut(s)	242, 749
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	2 cut(s)	242, 749
BssECI	CCNNGG	3 cut(s)	427, 498, 559
BssMI	GATC	3 cut(s)	247, 523, 676
BssT1I	CCWWGG	3 cut(s)	427, 498, 559
Bst2UI	CCWGG	3 cut(s)	27, 122, 188
Bst4CI	ACNGT	3 cut(s)	13, 379, 391
BstC8I	GCNNGC	6 cut(s)	373, 540, 659, 669, 673, 751
BstDSI	CCRYGG	1 cut(s)	498
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	2 cut(s)	352, 555
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	3 cut(s)	250, 526, 679
BstMAI	GTCTC	3 cut(s)	214, 362, 710
BstMBI	GATC	3 cut(s)	247, 523, 676
BstMCI	CGRYCG	1 cut(s)	750
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 544, 746
BstNI	CCWGG	3 cut(s)	27, 122, 188
BstNSI	RCATGY	3 cut(s)	375, 630, 661
BstPAI	GACNNNNGTC	1 cut(s)	226
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	5 cut(s)	25, 120, 163, 186, 328
BstV1I	GCAGC	4 cut(s)	183, 362, 446, 673
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BstZI	CGGCCG	1 cut(s)	747
BsuRI	GGCC	6 cut(s)	8, 107, 125, 186, 212, 749
BtgI	CCRYGG	1 cut(s)	498
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	352, 555
BtsIMutI	CAGTG	3 cut(s)	18, 113, 375
Cac8I	GCNNGC	6 cut(s)	373, 540, 659, 669, 673, 751
CaiI	CAGNNNCTG	1 cut(s)	667
CfoI	GCGC	1 cut(s)	549
Cfr10I	RCCGGY	2 cut(s)	242, 749
Cfr13I	GGNCC	5 cut(s)	32, 40, 88, 184, 495
CpoI	CGGWCCG	1 cut(s)	32
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	2 cut(s)	50, 564
CspI	CGGWCCG	1 cut(s)	32
CviAII	CATG	4 cut(s)	372, 499, 627, 658
CviQI	GTAC	2 cut(s)	50, 564
DpnI	GATC	3 cut(s)	249, 525, 678
DpnII	GATC	3 cut(s)	247, 523, 676
DraI	TTTAAA	1 cut(s)	465
DrdI	GACNNNNNNGTC	1 cut(s)	86
DriI	GACNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	1 cut(s)	747
EagI	CGGCCG	1 cut(s)	747
Eam1105I	GACNNNNNGTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	747
Eco130I	CCWWGG	3 cut(s)	427, 498, 559
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	4 cut(s)	32, 40, 88, 495
Eco52I	CGGCCG	1 cut(s)	747
Eco91I	GGTNACC	1 cut(s)	16
EcoO109I	RGGNCCY	2 cut(s)	40, 88
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	3 cut(s)	25, 120, 186
EcoRV	GATATC	1 cut(s)	424
EcoT14I	CCWWGG	3 cut(s)	427, 498, 559
ErhI	CCWWGG	3 cut(s)	427, 498, 559
FaeI	CATG	4 cut(s)	375, 502, 630, 661
FaiI	YATR	8 cut(s)	282, 373, 500, 603, 628, 659, 707, 733
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	4 cut(s)	371, 498, 626, 657
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	7 cut(s)	140, 172, 351, 435, 662, 665, 747
FokI	GGATG	2 cut(s)	359, 542
Fsp4HI	GCNGC	7 cut(s)	140, 172, 351, 435, 662, 665, 747
FspBI	CTAG	4 cut(s)	92, 354, 567, 680
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	7 cut(s)	140, 172, 351, 435, 662, 665, 747
HaeII	RGCGCY	1 cut(s)	550
HaeIII	GGCC	6 cut(s)	8, 107, 125, 186, 212, 749
HapII	CCGG	6 cut(s)	35, 164, 243, 302, 330, 750
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	4 cut(s)	375, 502, 630, 661
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HpaII	CCGG	6 cut(s)	35, 164, 243, 302, 330, 750
HphI	GGTGA	3 cut(s)	15, 257, 544
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188III	TCNNGA	6 cut(s)	198, 217, 397, 487, 680, 688
Hpy8I	GTNNAC	1 cut(s)	387
Hpy99I	CGWCG	2 cut(s)	218, 403
HpyAV	CCTTC	2 cut(s)	283, 337
HpyCH4III	ACNGT	3 cut(s)	13, 379, 391
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	8 cut(s)	171, 350, 375, 592, 630, 657, 661, 740
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 544, 746
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	4 cut(s)	375, 502, 630, 661
HspAI	GCGC	1 cut(s)	547
KroI	GCCGGC	1 cut(s)	749
KroNI	GCCGGC	1 cut(s)	751
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	247, 523, 676
Lsp1109I	GCAGC	4 cut(s)	183, 362, 446, 673
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	4 cut(s)	92, 354, 567, 680
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	5 cut(s)	16, 111, 177, 228, 511
MalI	GATC	3 cut(s)	249, 525, 678
MboI	GATC	3 cut(s)	247, 523, 676
MboII	GAAGA	3 cut(s)	74, 308, 518
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	1 cut(s)	523
MluCI	AATT	4 cut(s)	312, 518, 570, 741
MroNI	GCCGGC	1 cut(s)	749
MseI	TTAA	2 cut(s)	464, 623
MspA1I	CMGCKG	2 cut(s)	139, 664
MspI	CCGG	6 cut(s)	35, 164, 243, 302, 330, 750
MspR9I	CCNGG	5 cut(s)	27, 122, 165, 188, 330
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	1 cut(s)	701
MvaI	CCWGG	3 cut(s)	27, 122, 188
MwoI	GCNNNNNNNGC	3 cut(s)	302, 544, 746
NaeI	GCCGGC	1 cut(s)	751
NciI	CCSGG	2 cut(s)	165, 330
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	3 cut(s)	247, 523, 676
NgoMIV	GCCGGC	1 cut(s)	749
NlaIII	CATG	4 cut(s)	375, 502, 630, 661
NlaIV	GGNNCC	2 cut(s)	202, 496
NmeAIII	GCCGAG	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	111, 228
NspI	RCATGY	3 cut(s)	375, 630, 661
PaeI	GCATGC	2 cut(s)	375, 661
PctI	GAATGC	1 cut(s)	701
PdiI	GCCGGC	1 cut(s)	751
PkrI	GCNGC	7 cut(s)	141, 173, 352, 436, 663, 666, 748
PpuMI	RGGWCCY	2 cut(s)	40, 88
PshAI	GACNNNNGTC	1 cut(s)	226
Psp5II	RGGWCCY	2 cut(s)	40, 88
Psp6I	CCWGG	3 cut(s)	25, 120, 186
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	3 cut(s)	25, 120, 186
PspN4I	GGNNCC	2 cut(s)	202, 496
PspPI	GGNCC	5 cut(s)	32, 40, 88, 184, 495
PspPPI	RGGWCCY	2 cut(s)	40, 88
PstNI	CAGNNNCTG	1 cut(s)	667
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	2 cut(s)	51, 565
RsaNI	GTAC	2 cut(s)	50, 564
Rsr2I	CGGWCCG	1 cut(s)	32
RsrII	CGGWCCG	1 cut(s)	32
SalI	GTCGAC	1 cut(s)	385
SaqAI	TTAA	2 cut(s)	464, 623
SatI	GCNGC	7 cut(s)	140, 172, 351, 435, 662, 665, 747
Sau3AI	GATC	3 cut(s)	247, 523, 676
Sau96I	GGNCC	5 cut(s)	32, 40, 88, 184, 495
ScrFI	CCNGG	5 cut(s)	27, 122, 165, 188, 330
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	4 cut(s)	32, 40, 88, 495
SphI	GCATGC	2 cut(s)	375, 661
Sse9I	AATT	4 cut(s)	312, 518, 570, 741
SsiI	CCGC	4 cut(s)	30, 139, 664, 746
SspMI	CTAG	4 cut(s)	92, 354, 567, 680
StyD4I	CCNGG	5 cut(s)	25, 120, 163, 186, 328
StyI	CCWWGG	3 cut(s)	427, 498, 559
TaaI	ACNGT	3 cut(s)	13, 379, 391
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	102, 207, 386, 687
TasI	AATT	4 cut(s)	312, 518, 570, 741
TauI	GCSGC	3 cut(s)	142, 667, 749
Tru1I	TTAA	2 cut(s)	464, 623
Tru9I	TTAA	2 cut(s)	464, 623
TscAI	CASTG	3 cut(s)	18, 120, 382
TseFI	GTSAC	2 cut(s)	111, 228
TseI	GCWGC	4 cut(s)	171, 350, 434, 661
Tsp45I	GTSAC	2 cut(s)	111, 228
TspDTI	ATGAA	2 cut(s)	17, 694
TspRI	CASTG	3 cut(s)	18, 120, 382
VpaK11BI	GGWCC	4 cut(s)	32, 40, 88, 495
XapI	RAATTY	2 cut(s)	312, 570
XbaI	TCTAGA	1 cut(s)	679
XceI	RCATGY	3 cut(s)	375, 630, 661
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	4 cut(s)	92, 354, 567, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.