Rh5CG030100

quinone oxidoreductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000394
Physical Location & Seq
Reverse (-)
1914401 .. 1917914
3514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG030100.1

Sequence Viewer

Length: 435 bp
ATGCATAGCTTTTCATACATCATTTCAGATTCATACAGCCTCTGGTGGTATATTGGAACATTTGCCATTCAGATTGCTAGACACCAAGGTGTAACTGTATTTGTCACAGCAGGTGACGGGGCAAAATTAAAGGCATGTAGGGATCTTGGAGCTGAATTATGCATTAATCATAACACAGAGGACTTTGCTGAACTGGTAATGCAGAAGACAGAAGGAAGAGCGTGTGCATTGCGGAACAGAACTCCAGAAATGAAAGCCCTAATTGTTAAGAAGGTGTTGAAGCATGTTTGGCCTGCAATAAGGAATGGCTATGTGAAAGCTTTCAACAACAATATCAAGGCTTTCACATTCAATCAAGCAGTAGAGGCGCATGTACTCATGGAGACTAGCAACTTTACTGGAAAGATTTTGCTTGTTCCAGGGACATTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N ADH_zinc_N ADH_zinc_N_2

Protein Analysis

144

Amino Acids

16.13

Weight (kDa)

9.24

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 18 - 73 1.3e-10 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 101
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 150
AfaI GTAC 1 cut(s) 375
AgsI TTSAA 3 cut(s) 280, 325, 352
AjnI CCWGG 1 cut(s) 418
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 3 cut(s) 9, 152, 320
AluI AGCT 3 cut(s) 9, 152, 320
Alw26I GTCTC 1 cut(s) 377
AlwI GGATC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 42
AoxI GGCC 1 cut(s) 290
AseI ATTAAT 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 2 cut(s) 78, 387
BfuAI ACCTGC 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 85, 419
Bse1I ACTGG 2 cut(s) 198, 403
Bse3DI GCAATG 1 cut(s) 227
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 85, 419
BseMI GCAATG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 198, 403
BshFI GGCC 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 377
BsnI GGCC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 232
BspANI GGCC 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 211
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 2 cut(s) 198, 403
BssECI CCNNGG 2 cut(s) 85, 419
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 294
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 289, 365
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 3 cut(s) 138, 287, 374
BstSCI CCNGG 1 cut(s) 418
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 292
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 42
CfoI GCGC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 374
CviAII CATG 4 cut(s) 135, 284, 371, 379
CviJI RGCY 8 cut(s) 9, 39, 152, 257, 292, 309, 320, 341
CviKI_1 RGCY 8 cut(s) 9, 39, 152, 257, 292, 309, 320, 341
CviQI GTAC 1 cut(s) 374
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 2 cut(s) 6, 164
ErhI CCWWGG 1 cut(s) 85
FaeI CATG 4 cut(s) 138, 287, 374, 382
FatI CATG 4 cut(s) 134, 283, 370, 378
FspBI CTAG 2 cut(s) 78, 387
GlaI GCGC 1 cut(s) 369
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 292
HhaI GCGC 1 cut(s) 370
Hin1II CATG 4 cut(s) 138, 287, 374, 382
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 29
HphI GGTGA 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 28, 72
Hpy188III TCNNGA 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 206, 265
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 4, 162, 202, 227, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 365
Hsp92II CATG 4 cut(s) 138, 287, 374, 382
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 1 cut(s) 142
LguI GCTCTTC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 7 cut(s) 28, 96, 179, 258, 306, 384, 405
MaeI CTAG 2 cut(s) 78, 387
MaeIII GTNAC 3 cut(s) 91, 103, 113
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 2 cut(s) 217, 228
MflI RGATCY 1 cut(s) 142
MluCI AATT 3 cut(s) 125, 155, 261
MnlI CCTC 3 cut(s) 50, 172, 358
Mph1103I ATGCAT 2 cut(s) 6, 164
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 3 cut(s) 128, 165, 267
MslI CAYNNNNRTG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 2 cut(s) 289, 365
NdeII GATC 1 cut(s) 142
NlaIII CATG 4 cut(s) 138, 287, 374, 382
NmuCI GTSAC 2 cut(s) 103, 113
NsiI ATGCAT 2 cut(s) 6, 164
NspI RCATGY 3 cut(s) 138, 287, 374
OliI CACNNNNGTG 1 cut(s) 87
PaqCI CACCTGC 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 29
PshBI ATTAAT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 3 cut(s) 128, 165, 267
Sau3AI GATC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 420
SetI ASST 6 cut(s) 11, 91, 115, 154, 276, 322
SmiMI CAYNNNNRTG 1 cut(s) 87
Sse9I AATT 3 cut(s) 125, 155, 261
SsiI CCGC 1 cut(s) 232
SspMI CTAG 2 cut(s) 78, 387
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 97
TasI AATT 3 cut(s) 125, 155, 261
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 3 cut(s) 128, 165, 267
Tru9I TTAA 3 cut(s) 128, 165, 267
TseFI GTSAC 2 cut(s) 103, 113
Tsp45I GTSAC 2 cut(s) 103, 113
TspDTI ATGAA 2 cut(s) 21, 266
VspI ATTAAT 1 cut(s) 165
XceI RCATGY 3 cut(s) 138, 287, 374
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 2 cut(s) 78, 387
Zsp2I ATGCAT 2 cut(s) 6, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.