Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Forward (+)

645601 .. 645804

Gene Structure 204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG010500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGCTGGCTTCCGGTATAGAAATACAAAATACAAAGCGAGAATTGTCAAGGAGGTTGAGGAGCACGTGTGGCCTCTTATTGCAGCTGGTGGGGTAAAACCTGTTGTCCCTCACCGTTTTCCATTCTCTAAAGCAACAGAAGCGCACCGGCTCATGGAAAGTGGTGAGCACATAGGGAAGATACTGCTTATCCGTGATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

67

Amino Acids

7.7

Weight (kDa)

9.99

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N_2	PF13602	16 - 63	1.1e-12	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	66
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	2 cut(s)	66, 171
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	2 cut(s)	104, 176
BbrPI	CACGTG	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	66, 171
BbvI	GCAGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BsaAI	YACGTR	1 cut(s)	67
BsaWI	WCCGGW	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	95
BshFI	GGCC	1 cut(s)	73
BsiHKAI	GWGCWC	2 cut(s)	66, 171
BsiSI	CCGG	2 cut(s)	13, 148
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	1 cut(s)	73
Bsp1286I	GDGCHC	2 cut(s)	66, 171
BspANI	GGCC	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	147
BssAI	RCCGGY	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	7
BstHHI	GCGC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 140
BstV1I	GCAGC	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	147
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	5 cut(s)	5, 9, 73, 86, 151
CviKI_1	RGCY	5 cut(s)	5, 9, 73, 86, 151
Eco72I	CACGTG	1 cut(s)	67
FaeI	CATG	1 cut(s)	157
FaiI	YATR	3 cut(s)	18, 155, 173
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	84
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	2 cut(s)	13, 148
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HpaII	CCGG	2 cut(s)	13, 148
HphI	GGTGA	2 cut(s)	104, 176
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 140
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	26, 72, 114, 161
Lsp1109I	GCAGC	1 cut(s)	95
MaeII	ACGT	1 cut(s)	66
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	2 cut(s)	66, 171
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	4 cut(s)	46, 52, 84, 120
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	2 cut(s)	13, 148
MwoI	GCNNNNNNNGC	2 cut(s)	70, 140
NlaIII	CATG	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	85
PmaCI	CACGTG	1 cut(s)	67
PmlI	CACGTG	1 cut(s)	67
Ppu21I	YACGTR	1 cut(s)	67
PspCI	CACGTG	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	86
SatI	GCNGC	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	66, 171
SetI	ASST	4 cut(s)	57, 69, 88, 103
Sse9I	AATT	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	1 cut(s)	69
TasI	AATT	1 cut(s)	42
TseI	GCWGC	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.