RLG00000031088

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
1889243 .. 1892221
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031088

Sequence Viewer

Length: 1140 bp
ATGCACAAGCTCCGTGGATCTAGCTCTCGCAAGTCAGAATCTTCTGGGAATAAGTGGTTTTCCAAGAGAGGGAAAGGTGGTAATGATAACGAGGCGACTCAGAGAGACGAGGAAACGCCAGAGGTGACCCAGTTTATGTTTGCCGTTGTCACTACGACTGAAGGTAAAGCGGATGTCCTCCAAGTACGTCGTGTGCCAAAGCCGAAACCCAAAGCGGACGAGATGCTCGTAAAAGTGTCCTACGCGTGGGTGAATCGACCGGACATCCACCAGAGGGAGACGAAGTTACCACCCTGGGAAGGAAGCAGCGACGGAGGAAGCAACAGAAGAAGCGACTATCTCGGACTTGAGTGTTCTGGAAACATCGGTGAGTATGGGGTGGGCATGTCCGGAAAAGATATGAAAGCCTGGAAAATAGGCGACAAGGTGTGTGCTATTACCGACGGAGGAAGTTATGCACAGTACGTCGCTGTTCCAGTTGCACAGTTGCTTCCTTTTCCATCTAATAATACTAGTCTAAAGGCGGCTGCCACATTTCCTCAAGCTGCTTGTACTGTATGGTCAGAGTTGTTTATGGAGGAGAGGCTATCTGATGCGCTGCAGGATATTCTGTTTGCGTTCCAGCAATTTGATACAAGAATCTGTAATGATTTGATGTATATTTGTAGTGATGAAAAATTAGAAGCTTGTAGGAAGCTTGGAGCTAGTGTATGCATCAATTATCGTAAAGAGGCCTTTGAGAAAAGGGTACTGATGGAAACAGAAGGCAAAGGTGTGAATGTTATCTTGGATTGCCTTGGGGAGGAGTATTTTCAGCAAAACTGTTCTTGCTTAAGTAGTTCTGGGGGTAGGTTGGTCACCATTGGTCCTAACTGTAATACGTTTGGACAAGATTCTCACAAGGAAAGTTTGGGCCGCCACATTGTCAATGCGTGTGCATTGCGGAACAGAACTCCAGAAATGAAGGCCTTAATTGTTAAGAAGGTGCTGAAGCATGTTTGGCCTGCAATAAGGAATGGCCGTGTGGGAGCTTCCAATATCAAGACTTTCACCTTCAAGCAAGCAGCAGAGGCCCATACACTCATGGAGTCTGGCAACTTTACTGGAAGGATTTTGCTTATTCCAGGGACATTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

380

Amino Acids

41.91

Weight (kDa)

8.73

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 72 - 167 3.1e-08 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 223 - 289 1e-13 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 233 - 373 8.6e-20 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21580
fragaria_vesca FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis pycom05g29820
rosa_chinensis RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 245
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 5 cut(s) 170, 215, 524, 916, 943
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 1018
AcuI CTGAAG 2 cut(s) 180, 1010
AfaI GTAC 4 cut(s) 186, 464, 553, 750
AfiI CCNNNNNNNGG 5 cut(s) 69, 246, 274, 299, 802
AflII CTTAAG 1 cut(s) 832
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 1057
AhlI ACTAGT 1 cut(s) 512
AjnI CCWGG 3 cut(s) 293, 407, 1123
AjuI GAANNNNNNNTTGG 2 cut(s) 770, 802
AluBI AGCT 7 cut(s) 10, 24, 545, 686, 697, 704, 1031
AluI AGCT 7 cut(s) 10, 24, 545, 686, 697, 704, 1031
Alw26I GTCTC 2 cut(s) 99, 272
AlwI GGATC 1 cut(s) 25
Aor13HI TCCGGA 1 cut(s) 389
AoxI GGCC 6 cut(s) 732, 913, 966, 1001, 1018, 1071
ApeKI GCWGC 5 cut(s) 306, 527, 545, 598, 1064
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 3 cut(s) 866, 913, 1072
AsuHPI GGTGA 5 cut(s) 136, 262, 380, 850, 1042
AvaII GGWCC 1 cut(s) 866
BbvI GCAGC 5 cut(s) 318, 514, 532, 585, 1076
BccI CCATC 2 cut(s) 508, 748
BceAI ACGGC 2 cut(s) 128, 1005
BciT130I CCWGG 3 cut(s) 295, 409, 1125
BcoDI GTCTC 2 cut(s) 99, 272
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 3 cut(s) 21, 513, 705
BfmI CTRYAG 1 cut(s) 599
BfrI CTTAAG 1 cut(s) 832
BisI GCNGC 7 cut(s) 307, 525, 528, 546, 599, 916, 1065
BlsI GCNGC 7 cut(s) 308, 526, 529, 547, 600, 917, 1066
Bme1390I CCNGG 3 cut(s) 295, 409, 1125
Bme18I GGWCC 1 cut(s) 866
BmgT120I GGNCC 3 cut(s) 866, 913, 1072
BmrFI CCNGG 3 cut(s) 295, 409, 1125
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 3 cut(s) 213, 583, 723
BmuI ACTGGG 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 939
BpuEI CTTGAG 2 cut(s) 368, 525
BsaJI CCNNGG 5 cut(s) 13, 293, 294, 796, 1124
BsaWI WCCGGW 2 cut(s) 259, 389
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 693, 723
Bsc4I CCNNNNNNNGG 5 cut(s) 69, 246, 274, 299, 802
Bse1I ACTGG 3 cut(s) 130, 476, 1108
Bse3DI GCAATG 1 cut(s) 938
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 3 cut(s) 295, 409, 1125
BseDI CCNNGG 5 cut(s) 13, 293, 294, 796, 1124
BseGI GGATG 2 cut(s) 178, 264
BseLI CCNNNNNNNGG 5 cut(s) 69, 246, 274, 299, 802
BseMI GCAATG 1 cut(s) 938
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 3 cut(s) 130, 476, 1108
BseRI GAGGAG 2 cut(s) 593, 818
BseXI GCAGC 5 cut(s) 318, 514, 532, 585, 1076
Bsh1236I CGCG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 6 cut(s) 734, 915, 968, 1003, 1020, 1073
BsiEI CGRYCG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 260, 390
BslI CCNNNNNNNGG 5 cut(s) 69, 246, 274, 299, 802
BsmAI GTCTC 2 cut(s) 99, 272
BsmBI CGTCTC 2 cut(s) 99, 272
BsnI GGCC 6 cut(s) 734, 915, 968, 1003, 1020, 1073
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 5 cut(s) 170, 215, 524, 916, 943
BspANI GGCC 6 cut(s) 734, 915, 968, 1003, 1020, 1073
BspCNI CTCAG 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 389
BspFNI CGCG 1 cut(s) 245
BspMAI CTGCAG 1 cut(s) 603
BspPI GGATC 1 cut(s) 25
BspTI CTTAAG 1 cut(s) 832
BsrDI GCAATG 1 cut(s) 938
BsrI ACTGG 3 cut(s) 130, 476, 1108
BssECI CCNNGG 5 cut(s) 13, 293, 294, 796, 1124
BssMI GATC 1 cut(s) 17
BssT1I CCWWGG 1 cut(s) 796
Bst2UI CCWGG 3 cut(s) 295, 409, 1125
Bst4CI ACNGT 5 cut(s) 462, 486, 556, 824, 875
BstAFI CTTAAG 1 cut(s) 832
BstC8I GCNNGC 2 cut(s) 1005, 1062
BstDEI CTNAG 1 cut(s) 99
BstDSI CCRYGG 1 cut(s) 13
BstEII GGTNACC 2 cut(s) 124, 856
BstENI CCTNNNNNAGG 1 cut(s) 800
BstF5I GGATG 2 cut(s) 178, 264
BstFNI CGCG 1 cut(s) 245
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 1 cut(s) 20
BstMAI GTCTC 2 cut(s) 99, 272
BstMBI GATC 1 cut(s) 17
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 2 cut(s) 1000, 1070
BstNI CCWGG 3 cut(s) 295, 409, 1125
BstNSI RCATGY 2 cut(s) 388, 998
BstPI GGTNACC 2 cut(s) 124, 856
BstSCI CCNGG 3 cut(s) 293, 407, 1123
BstSFI CTRYAG 1 cut(s) 599
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 5 cut(s) 318, 514, 532, 585, 1076
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 6 cut(s) 734, 915, 968, 1003, 1020, 1073
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 178, 264
Cac8I GCNNGC 2 cut(s) 1005, 1062
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 3 cut(s) 866, 913, 1072
Csp6I GTAC 4 cut(s) 185, 463, 552, 749
CspCI CAANNNNNGTGG 1 cut(s) 30
CviAII CATG 4 cut(s) 385, 995, 1084, 1137
CviQI GTAC 4 cut(s) 185, 463, 552, 749
DdeI CTNAG 1 cut(s) 99
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 1018
Eco130I CCWWGG 1 cut(s) 796
Eco147I AGGCCT 2 cut(s) 734, 968
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 2 cut(s) 180, 1010
Eco91I GGTNACC 2 cut(s) 124, 856
EcoNI CCTNNNNNAGG 1 cut(s) 800
EcoO65I GGTNACC 2 cut(s) 124, 856
EcoRII CCWGG 3 cut(s) 293, 407, 1123
EcoT14I CCWWGG 1 cut(s) 796
EcoT22I ATGCAT 1 cut(s) 716
ErhI CCWWGG 1 cut(s) 796
Esp3I CGTCTC 2 cut(s) 99, 272
FaeI CATG 4 cut(s) 388, 998, 1087, 1140
FatI CATG 4 cut(s) 384, 994, 1083, 1136
Fnu4HI GCNGC 7 cut(s) 307, 525, 528, 546, 599, 916, 1065
FokI GGATG 2 cut(s) 185, 251
Fsp4HI GCNGC 7 cut(s) 307, 525, 528, 546, 599, 916, 1065
FspBI CTAG 3 cut(s) 21, 513, 705
GlaI GCGC 1 cut(s) 597
GluI GCNGC 7 cut(s) 307, 525, 528, 546, 599, 916, 1065
GsuI CTGGAG 1 cut(s) 939
HaeIII GGCC 6 cut(s) 734, 915, 968, 1003, 1020, 1073
HapII CCGG 2 cut(s) 260, 390
HhaI GCGC 1 cut(s) 598
Hin1II CATG 4 cut(s) 388, 998, 1087, 1140
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HindIII AAGCTT 2 cut(s) 684, 695
HinfI GANTC 6 cut(s) 38, 97, 253, 639, 893, 1088
HpaII CCGG 2 cut(s) 260, 390
HphI GGTGA 5 cut(s) 136, 262, 380, 850, 1042
Hpy188I TCNGA 5 cut(s) 37, 102, 344, 565, 592
Hpy188III TCNNGA 4 cut(s) 357, 390, 956, 1042
Hpy99I CGWCG 4 cut(s) 192, 314, 446, 470
HpyAV CCTTC 7 cut(s) 155, 293, 758, 958, 976, 1063, 1101
HpyCH4III ACNGT 5 cut(s) 462, 486, 556, 824, 875
HpyCH4IV ACGT 3 cut(s) 187, 465, 881
HpyCH4V TGCA 7 cut(s) 4, 458, 482, 601, 714, 938, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 1000, 1070
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 3 cut(s) 187, 465, 881
Hsp92II CATG 4 cut(s) 388, 998, 1087, 1140
HspAI GCGC 1 cut(s) 596
Kpn2I TCCGGA 1 cut(s) 389
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 3 cut(s) 15, 701, 1028
Lsp1109I GCAGC 5 cut(s) 318, 514, 532, 585, 1076
LweI GCATC 3 cut(s) 213, 583, 723
MaeI CTAG 3 cut(s) 21, 513, 705
MaeII ACGT 3 cut(s) 187, 465, 881
MaeIII GTNAC 4 cut(s) 124, 148, 285, 856
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 2 cut(s) 33, 339
MflI RGATCY 1 cut(s) 17
MluCI AATT 4 cut(s) 626, 677, 718, 972
MluI ACGCGT 1 cut(s) 243
MlyI GAGTC 2 cut(s) 91, 1097
Mph1103I ATGCAT 1 cut(s) 716
MroI TCCGGA 1 cut(s) 389
MseI TTAA 3 cut(s) 833, 971, 978
MslI CAYNNNNRTG 1 cut(s) 1135
MspCI CTTAAG 1 cut(s) 832
MspI CCGG 2 cut(s) 260, 390
MspR9I CCNGG 3 cut(s) 295, 409, 1125
MvaI CCWGG 3 cut(s) 295, 409, 1125
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 1000, 1070
NdeII GATC 1 cut(s) 17
NlaIII CATG 4 cut(s) 388, 998, 1087, 1140
NmuCI GTSAC 3 cut(s) 124, 148, 856
NsiI ATGCAT 1 cut(s) 716
NspI RCATGY 2 cut(s) 388, 998
PasI CCCWGGG 1 cut(s) 294
PceI AGGCCT 2 cut(s) 734, 968
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 4 cut(s) 38, 253, 639, 893
PkrI GCNGC 7 cut(s) 308, 526, 529, 547, 600, 917, 1066
PleI GAGTC 2 cut(s) 91, 1096
PpsI GAGTC 2 cut(s) 91, 1096
Psp6I CCWGG 3 cut(s) 293, 407, 1123
PspEI GGTNACC 2 cut(s) 124, 856
PspGI CCWGG 3 cut(s) 293, 407, 1123
PspPI GGNCC 3 cut(s) 866, 913, 1072
PstI CTGCAG 1 cut(s) 603
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 4 cut(s) 186, 464, 553, 750
RsaNI GTAC 4 cut(s) 185, 463, 552, 749
RseI CAYNNNNRTG 1 cut(s) 1135
SaqAI TTAA 3 cut(s) 833, 971, 978
SatI GCNGC 7 cut(s) 307, 525, 528, 546, 599, 916, 1065
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 3 cut(s) 866, 913, 1072
SchI GAGTC 2 cut(s) 91, 1097
ScrFI CCNGG 3 cut(s) 295, 409, 1125
SfaNI GCATC 3 cut(s) 213, 583, 723
SfcI CTRYAG 1 cut(s) 599
SinI GGWCC 1 cut(s) 866
SmiMI CAYNNNNRTG 1 cut(s) 1135
SmlI CTYRAG 3 cut(s) 347, 540, 832
SmoI CTYRAG 3 cut(s) 347, 540, 832
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 4 cut(s) 626, 677, 718, 972
SseBI AGGCCT 2 cut(s) 734, 968
SsiI CCGC 5 cut(s) 170, 215, 524, 916, 943
SspMI CTAG 3 cut(s) 21, 513, 705
StuI AGGCCT 2 cut(s) 734, 968
StyD4I CCNGG 3 cut(s) 293, 407, 1123
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 5 cut(s) 462, 486, 556, 824, 875
TaiI ACGT 3 cut(s) 190, 468, 884
TaqI TCGA 1 cut(s) 256
TasI AATT 4 cut(s) 626, 677, 718, 972
TatI WGTACW 1 cut(s) 551
TauI GCSGC 2 cut(s) 527, 918
TfiI GAWTC 4 cut(s) 38, 253, 639, 893
Tru1I TTAA 3 cut(s) 833, 971, 978
Tru9I TTAA 3 cut(s) 833, 971, 978
TseFI GTSAC 3 cut(s) 124, 148, 856
TseI GCWGC 5 cut(s) 306, 527, 545, 598, 1064
Tsp45I GTSAC 3 cut(s) 124, 148, 856
TspDTI ATGAA 3 cut(s) 416, 687, 977
TspGWI ACGGA 2 cut(s) 327, 459
Vha464I CTTAAG 1 cut(s) 832
VpaK11BI GGWCC 1 cut(s) 866
XagI CCTNNNNNAGG 1 cut(s) 800
XceI RCATGY 2 cut(s) 388, 998
XspI CTAG 3 cut(s) 21, 513, 705
Zsp2I ATGCAT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.