Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Forward (+)

4828786 .. 4829394

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAAGGTCATAGTGGTTAGCTCACCAGGAGGACCGGAGGTCCTCCAAGTACAGGAAGTGGAAGACCCCAAAAATAAAAGACGACGAGTTTCTAGTCAAAGTCGAGGCCACGTCACTGAACCAGGCAGACAGCTTACAGCAGGTCAACGGCTAGGGTTCTACCCACGGTACCCACCACCTCTGGGTTCCAGCGAGTTGCTGGGCCTGGAATGTTCCGGAACCATCGAGGCCGTCGGGGAACACGTGTCACGCTGGAAAGCCGGCGATCAGCAATGCATATATATTGGATTCACAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

100

Amino Acids

10.91

Weight (kDa)

8.71

Isoelectric Point (pI)

81.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	215
AcvI	CACGTG	1 cut(s)	244
AfaI	GTAC	2 cut(s)	51, 170
AfiI	CCNNNNNNNGG	2 cut(s)	52, 182
AflIII	ACRYGT	2 cut(s)	241, 243
AhdI	GACNNNNNGTC	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	3 cut(s)	25, 121, 204
AluBI	AGCT	3 cut(s)	21, 133, 299
AluI	AGCT	3 cut(s)	21, 133, 299
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	3 cut(s)	106, 202, 228
Asp718I	GGTACC	1 cut(s)	168
AspS9I	GGNCC	3 cut(s)	32, 40, 202
AsuHPI	GGTGA	1 cut(s)	15
AvaII	GGWCC	2 cut(s)	32, 40
BanI	GGYRCC	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	69
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	164, 215
BciT130I	CCWGG	3 cut(s)	27, 123, 206
BfaI	CTAG	2 cut(s)	93, 152
BfuAI	ACCTGC	1 cut(s)	131
Bme1390I	CCNGG	3 cut(s)	27, 123, 206
Bme18I	GGWCC	2 cut(s)	32, 40
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	32, 40, 202
BmiI	GGNNCC	3 cut(s)	170, 187, 220
BmrFI	CCNGG	3 cut(s)	27, 123, 206
BpiI	GAAGAC	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	2 cut(s)	34, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 182
Bse118I	RCCGGY	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	215
BseBI	CCWGG	3 cut(s)	27, 123, 206
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	2 cut(s)	52, 182
BseMI	GCAATG	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	3 cut(s)	108, 204, 230
BshNI	GGYRCC	1 cut(s)	168
BsiSI	CCGG	3 cut(s)	35, 216, 261
BslI	CCNNNNNNNGG	2 cut(s)	52, 182
BsnI	GGCC	3 cut(s)	108, 204, 230
Bsp13I	TCCGGA	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	265
BspANI	GGCC	3 cut(s)	108, 204, 230
BspEI	TCCGGA	1 cut(s)	215
BspLI	GGNNCC	3 cut(s)	170, 187, 220
BspMI	ACCTGC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	265
Bst2UI	CCWGG	3 cut(s)	27, 123, 206
Bst4CI	ACNGT	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	262
BstDSI	CCRYGG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstNI	CCWGG	3 cut(s)	27, 123, 206
BstSCI	CCNGG	3 cut(s)	25, 121, 204
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	108, 204, 230
BtgI	CCRYGG	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	112
BtsIMutI	CAGTG	1 cut(s)	114
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	3 cut(s)	32, 40, 202
Csp6I	GTAC	2 cut(s)	50, 169
CviJI	RGCY	8 cut(s)	21, 108, 133, 151, 204, 230, 260, 299
CviKI_1	RGCY	8 cut(s)	21, 108, 133, 151, 204, 230, 260, 299
CviQI	GTAC	2 cut(s)	50, 169
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	32, 40
Eco72I	CACGTG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	3 cut(s)	25, 121, 204
EcoT22I	ATGCAT	1 cut(s)	278
FaiI	YATR	4 cut(s)	11, 278, 280, 282
FspBI	CTAG	2 cut(s)	93, 152
GsaI	CCCAGC	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	108, 204, 230
HapII	CCGG	3 cut(s)	35, 216, 261
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	1 cut(s)	288
HpaII	CCGG	3 cut(s)	35, 216, 261
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	146
Hpy99I	CGWCG	2 cut(s)	87, 236
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	2 cut(s)	111, 243
HpyCH4V	TGCA	1 cut(s)	276
HpySE526I	ACGT	2 cut(s)	111, 243
Kpn2I	TCCGGA	1 cut(s)	215
KpnI	GGTACC	1 cut(s)	172
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	93, 152
MaeII	ACGT	2 cut(s)	111, 243
MaeIII	GTNAC	2 cut(s)	112, 246
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	74
MnlI	CCTC	6 cut(s)	23, 31, 53, 98, 189, 220
Mph1103I	ATGCAT	1 cut(s)	278
MroI	TCCGGA	1 cut(s)	215
MroNI	GCCGGC	1 cut(s)	260
MspI	CCGG	3 cut(s)	35, 216, 261
MspR9I	CCNGG	3 cut(s)	27, 123, 206
MvaI	CCWGG	3 cut(s)	27, 123, 206
NaeI	GCCGGC	1 cut(s)	262
NdeII	GATC	1 cut(s)	265
NgoMIV	GCCGGC	1 cut(s)	260
NlaIV	GGNNCC	3 cut(s)	170, 187, 220
NmuCI	GTSAC	2 cut(s)	112, 246
NsiI	ATGCAT	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	288
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	3 cut(s)	25, 121, 204
PspCI	CACGTG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	3 cut(s)	25, 121, 204
PspN4I	GGNNCC	3 cut(s)	170, 187, 220
PspPI	GGNCC	3 cut(s)	32, 40, 202
PspPPI	RGGWCCY	1 cut(s)	40
RsaI	GTAC	2 cut(s)	51, 170
RsaNI	GTAC	2 cut(s)	50, 169
Sau3AI	GATC	1 cut(s)	265
Sau96I	GGNCC	3 cut(s)	32, 40, 202
ScrFI	CCNGG	3 cut(s)	27, 123, 206
SetI	ASST	9 cut(s)	9, 23, 42, 114, 135, 145, 181, 246, 301
SinI	GGWCC	2 cut(s)	32, 40
SspMI	CTAG	2 cut(s)	93, 152
StyD4I	CCNGG	3 cut(s)	25, 121, 204
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	2 cut(s)	114, 246
TaqI	TCGA	2 cut(s)	103, 225
TatI	WGTACW	1 cut(s)	49
TfiI	GAWTC	1 cut(s)	288
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	2 cut(s)	112, 246
Tsp45I	GTSAC	2 cut(s)	112, 246
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	32, 40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XspI	CTAG	2 cut(s)	93, 152
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.