Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001886.1

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Reverse (-)

47244 .. 47585

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001886.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgaaagttatagtagtaacaagtgcaggtggtccggatgttctcaaagaaatcgaggtgcctgaaccagaactaatggacgatggagtcctgataaaggtggcggccaccgccctgaatgagcctgaccttactgcgaggacgaggtctttgccgccgatgcaaagggagtacctaggtctggaatgtgccggaacgatcgtgaaagtcgggaaagacgtccagcgatggaaagtcggccaagaggtgattttcaattcagatattgtttgtcttgaggtttgtttgcttgcagagccacagaggaaatggtgtaagaaaatcagttctagtcgtaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

113

Amino Acids

12.48

Weight (kDa)

6.3

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
AasI	GACNNNNNNGTC	1 cut(s)	86
AatII	GACGTC	1 cut(s)	222
Acc36I	ACCTGC	1 cut(s)	17
AccB1I	GGYRCC	1 cut(s)	58
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	3 cut(s)	104, 111, 155
AcoI	YGGCCR	2 cut(s)	105, 238
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	97, 181
AgsI	TTSAA	1 cut(s)	256
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	2 cut(s)	105, 238
ArsI	GACNNNNNNTTYG	2 cut(s)	133, 165
AspA2I	CCTAGG	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	32
AvrII	CCTAGG	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	58
BccI	CCATC	2 cut(s)	77, 222
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BfaI	CTAG	2 cut(s)	176, 330
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	105, 155
BlnI	CCTAGG	1 cut(s)	175
BlsI	GCNGC	2 cut(s)	106, 156
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	60
BmsI	GCATC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	175
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 181
BseAI	TCCGGA	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	97, 181
BsgI	GTGCAG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	107, 240
BshNI	GGYRCC	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	35, 192
BslI	CCNNNNNNNGG	2 cut(s)	97, 181
BsnI	GGCC	2 cut(s)	107, 240
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	198
BspACI	CCGC	3 cut(s)	104, 111, 155
BspANI	GGCC	2 cut(s)	107, 240
BspEI	TCCGGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	291
BstENI	CCTNNNNNAGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	198
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 160, 295
BsuRI	GGCC	2 cut(s)	107, 240
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	172
CviJI	RGCY	4 cut(s)	107, 124, 240, 298
CviKI_1	RGCY	4 cut(s)	107, 124, 240, 298
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	1 cut(s)	200
DpnII	GATC	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	2 cut(s)	105, 238
Eco130I	CCWWGG	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaiI	YATR	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	105, 155
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	105, 155
FspBI	CTAG	2 cut(s)	176, 330
GluI	GCNGC	2 cut(s)	105, 155
HaeIII	GGCC	2 cut(s)	107, 240
HapII	CCGG	2 cut(s)	35, 192
Hin1I	GRCGYC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	87
HpaII	CCGG	2 cut(s)	35, 192
HphI	GGTGA	1 cut(s)	259
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	6 cut(s)	35, 91, 182, 202, 211, 275
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	26, 163, 293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 160, 295
HpySE526I	ACGT	1 cut(s)	219
Hsp92I	GRCGYC	1 cut(s)	219
Kpn2I	TCCGGA	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	198
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	2 cut(s)	176, 330
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	200
MboI	GATC	1 cut(s)	198
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	49, 132, 138, 238, 271, 297
MroI	TCCGGA	1 cut(s)	34
MspI	CCGG	2 cut(s)	35, 192
MwoI	GCNNNNNNNGC	3 cut(s)	110, 160, 295
NdeII	GATC	1 cut(s)	198
NlaIV	GGNNCC	1 cut(s)	60
PaqCI	CACCTGC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PflFI	GACNNNGTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	106, 156
Ple19I	CGATCG	1 cut(s)	201
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	32
PsyI	GACNNNGTC	1 cut(s)	145
PvuI	CGATCG	1 cut(s)	201
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SatI	GCNGC	2 cut(s)	105, 155
Sau3AI	GATC	1 cut(s)	198
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	96
SfaNI	GCATC	1 cut(s)	150
SinI	GGWCC	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	3 cut(s)	104, 111, 155
SspMI	CTAG	2 cut(s)	176, 330
StyI	CCWWGG	1 cut(s)	175
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	256
TauI	GCSGC	2 cut(s)	107, 157
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	306
XmaJI	CCTAGG	1 cut(s)	175
XspI	CTAG	2 cut(s)	176, 330
ZraI	GACGTC	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.