Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010917.1

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Forward (+)

99461 .. 100365

Gene Structure 905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010917.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgattgatgggccaggtgacggggcaaaattaaaggcctgtagggatcttggagctgaattatgcattaatcataacacagaggactttgctgaactagtaatgcagaagacagaaggaagaggtcgggcccgaccacaacgagggcggctcaaggatgtgtggtcgaaattgggattactgagcagatccgaggagctgctaggggtgatgggatactatgctctccgatccgcggtggtcggatctatgtctaagtcactaaggcacacgacgttggctttcacggcagcgacgacggcgcaaagatatcaaaacgcggtgaccttggcttcgtgtttatgggttcgacatcaggccggccggcagcctgtacgtgtggcggcgattatgatcaatgtaggagaaggacgatgggatttgggttgggtgcccaaatcactttcaaggcccaatgtgcggcccgaatatgttaggtggcccaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

162

Amino Acids

18.02

Weight (kDa)

10.08

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AccII	CGCG	2 cut(s)	236, 320
AciI	CCGC	6 cut(s)	148, 234, 236, 320, 383, 460
AclWI	GGATC	4 cut(s)	54, 183, 225, 253
AcoI	YGGCCR	1 cut(s)	361
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	4 cut(s)	20, 143, 235, 459
AflIII	ACRYGT	1 cut(s)	376
AgsI	TTSAA	1 cut(s)	447
AhlI	ACTAGT	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	56, 199
AluI	AGCT	2 cut(s)	56, 199
AlwI	GGATC	4 cut(s)	54, 183, 225, 253
AoxI	GGCC	8 cut(s)	11, 36, 129, 357, 361, 449, 461, 479
ApaI	GGGCCC	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	199, 290, 367
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
AseI	ATTAAT	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	6 cut(s)	11, 129, 130, 450, 462, 480
AsuHPI	GGTGA	3 cut(s)	29, 220, 334
BaeGI	GKGCMC	2 cut(s)	133, 435
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	186, 302, 379
BccI	CCATC	3 cut(s)	2, 205, 408
BceAI	ACGGC	2 cut(s)	303, 315
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	209
BclI	TGATCA	1 cut(s)	393
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	2 cut(s)	98, 203
BfmI	CTRYAG	1 cut(s)	40
BfuI	GTATCC	1 cut(s)	209
BisI	GCNGC	6 cut(s)	149, 200, 291, 368, 384, 461
BlsI	GCNGC	6 cut(s)	150, 201, 292, 369, 385, 462
Bme1390I	CCNGG	1 cut(s)	15
BmgT120I	GGNCC	6 cut(s)	11, 129, 130, 450, 462, 480
BmiI	GGNNCC	2 cut(s)	131, 432
BmrFI	CCNGG	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	135, 167
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	192, 234, 327
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 143, 235, 459
Bse118I	RCCGGY	2 cut(s)	359, 363
Bse8I	GATNNNNATC	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	3 cut(s)	192, 234, 327
BseGI	GGATG	1 cut(s)	163
BseJI	GATNNNNATC	1 cut(s)	392
BseLI	CCNNNNNNNGG	4 cut(s)	20, 143, 235, 459
BseMII	CTCAG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	2 cut(s)	133, 435
BseX3I	CGGCCG	1 cut(s)	361
BseXI	GCAGC	3 cut(s)	186, 302, 379
Bsh1236I	CGCG	2 cut(s)	236, 320
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	8 cut(s)	13, 38, 131, 359, 363, 451, 463, 481
BshNI	GGYRCC	1 cut(s)	430
BsiEI	CGRYCG	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	360, 364
BslI	CCNNNNNNNGG	4 cut(s)	20, 143, 235, 459
BsnI	GGCC	8 cut(s)	13, 38, 131, 359, 363, 451, 463, 481
Bsp120I	GGGCCC	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	133, 435
Bsp143I	GATC	5 cut(s)	46, 188, 230, 245, 393
BspACI	CCGC	6 cut(s)	148, 234, 236, 320, 383, 460
BspANI	GGCC	8 cut(s)	13, 38, 131, 359, 363, 451, 463, 481
BspCNI	CTCAG	1 cut(s)	174
BspFNI	CGCG	2 cut(s)	236, 320
BspLI	GGNNCC	2 cut(s)	131, 432
BspPI	GGATC	4 cut(s)	54, 183, 225, 253
BspT107I	GGYRCC	1 cut(s)	430
BsrFI	RCCGGY	2 cut(s)	359, 363
BssAI	RCCGGY	2 cut(s)	359, 363
BssECI	CCNNGG	3 cut(s)	192, 234, 327
BssMI	GATC	5 cut(s)	46, 188, 230, 245, 393
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	15
Bst6I	CTCTTC	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	361, 365
BstDEI	CTNAG	3 cut(s)	182, 255, 263
BstDSI	CCRYGG	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	2 cut(s)	236, 320
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	5 cut(s)	49, 191, 233, 248, 396
BstMBI	GATC	5 cut(s)	46, 188, 230, 245, 393
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 299, 457
BstNI	CCWGG	1 cut(s)	15
BstPI	GGTNACC	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	40
BstSLI	GKGCMC	2 cut(s)	133, 435
BstUI	CGCG	2 cut(s)	236, 320
BstV1I	GCAGC	3 cut(s)	186, 302, 379
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	3 cut(s)	46, 188, 245
BstYI	RGATCY	3 cut(s)	46, 188, 245
BstZI	CGGCCG	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	8 cut(s)	13, 38, 131, 359, 363, 451, 463, 481
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	361, 365
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	359, 363
Cfr13I	GGNCC	6 cut(s)	11, 129, 130, 450, 462, 480
Cfr42I	CCGCGG	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	374
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	3 cut(s)	182, 255, 263
DpnI	GATC	5 cut(s)	48, 190, 232, 247, 395
DpnII	GATC	5 cut(s)	46, 188, 230, 245, 393
EaeI	YGGCCR	1 cut(s)	361
EagI	CGGCCG	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	311
Eco52I	CGGCCG	1 cut(s)	361
Eco91I	GGTNACC	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	327
FaiI	YATR	7 cut(s)	64, 75, 222, 251, 343, 392, 471
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	6 cut(s)	149, 200, 291, 368, 384, 461
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	133
FseI	GGCCGGCC	1 cut(s)	363
Fsp4HI	GCNGC	6 cut(s)	149, 200, 291, 368, 384, 461
FspBI	CTAG	2 cut(s)	98, 203
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	6 cut(s)	149, 200, 291, 368, 384, 461
HaeIII	GGCC	8 cut(s)	13, 38, 131, 359, 363, 451, 463, 481
HapII	CCGG	2 cut(s)	360, 364
HhaI	GCGC	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HpaII	CCGG	2 cut(s)	360, 364
HphI	GGTGA	3 cut(s)	29, 220, 334
Hpy188I	TCNGA	3 cut(s)	193, 230, 245
Hpy99I	CGWCG	3 cut(s)	277, 298, 301
HpyAV	CCTTC	2 cut(s)	110, 401
HpyCH4IV	ACGT	2 cut(s)	275, 376
HpyCH4V	TGCA	2 cut(s)	66, 106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 299, 457
HpyF3I	CTNAG	3 cut(s)	182, 255, 263
HpySE526I	ACGT	2 cut(s)	275, 376
HspAI	GCGC	1 cut(s)	302
KroI	GCCGGC	2 cut(s)	359, 363
KroNI	GCCGGC	2 cut(s)	361, 365
Ksp22I	TGATCA	1 cut(s)	393
KspI	CCGCGG	1 cut(s)	237
Kzo9I	GATC	5 cut(s)	46, 188, 230, 245, 393
LmnI	GCTCC	2 cut(s)	53, 196
LpnPI	CCDG	6 cut(s)	27, 52, 341, 373, 377, 384
Lsp1109I	GCAGC	3 cut(s)	186, 302, 379
MaeI	CTAG	2 cut(s)	98, 203
MaeII	ACGT	2 cut(s)	275, 376
MaeIII	GTNAC	3 cut(s)	17, 258, 322
MalI	GATC	5 cut(s)	48, 190, 232, 247, 395
MboI	GATC	5 cut(s)	46, 188, 230, 245, 393
MboII	GAAGA	2 cut(s)	121, 132
MflI	RGATCY	3 cut(s)	46, 188, 245
MhlI	GDGCHC	2 cut(s)	133, 435
MluCI	AATT	3 cut(s)	29, 59, 170
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	4 cut(s)	76, 116, 137, 187
Mph1103I	ATGCAT	1 cut(s)	68
MroNI	GCCGGC	2 cut(s)	359, 363
MseI	TTAA	2 cut(s)	32, 69
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	2 cut(s)	360, 364
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
MvnI	CGCG	2 cut(s)	236, 320
MwoI	GCNNNNNNNGC	3 cut(s)	287, 299, 457
NaeI	GCCGGC	2 cut(s)	361, 365
NdeII	GATC	5 cut(s)	46, 188, 230, 245, 393
NgoMIV	GCCGGC	2 cut(s)	359, 363
NlaIV	GGNNCC	2 cut(s)	131, 432
NmuCI	GTSAC	3 cut(s)	17, 258, 322
NsiI	ATGCAT	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PdiI	GCCGGC	2 cut(s)	361, 365
PkrI	GCNGC	6 cut(s)	150, 201, 292, 369, 385, 462
Ppu21I	YACGTR	1 cut(s)	377
PshBI	ATTAAT	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	13
PspEI	GGTNACC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	131, 432
PspOMI	GGGCCC	1 cut(s)	129
PspPI	GGNCC	6 cut(s)	11, 129, 130, 450, 462, 480
PsuI	RGATCY	3 cut(s)	46, 188, 245
RigI	GGCCGGCC	1 cut(s)	363
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SacII	CCGCGG	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	32, 69
SatI	GCNGC	6 cut(s)	149, 200, 291, 368, 384, 461
Sau3AI	GATC	5 cut(s)	46, 188, 230, 245, 393
Sau96I	GGNCC	6 cut(s)	11, 129, 130, 450, 462, 480
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	2 cut(s)	133, 435
SetI	ASST	8 cut(s)	19, 58, 127, 201, 278, 329, 379, 479
SfcI	CTRYAG	1 cut(s)	40
Sfr303I	CCGCGG	1 cut(s)	237
SgrBI	CCGCGG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SpeI	ACTAGT	1 cut(s)	97
Sse9I	AATT	3 cut(s)	29, 59, 170
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	6 cut(s)	148, 234, 236, 320, 383, 460
SspMI	CTAG	2 cut(s)	98, 203
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	327
TaiI	ACGT	2 cut(s)	278, 379
TaqI	TCGA	2 cut(s)	167, 349
TasI	AATT	3 cut(s)	29, 59, 170
TauI	GCSGC	3 cut(s)	151, 386, 463
Tru1I	TTAA	2 cut(s)	32, 69
Tru9I	TTAA	2 cut(s)	32, 69
TseFI	GTSAC	3 cut(s)	17, 258, 322
TseI	GCWGC	3 cut(s)	199, 290, 367
Tsp45I	GTSAC	3 cut(s)	17, 258, 322
VspI	ATTAAT	1 cut(s)	69
XspI	CTAG	2 cut(s)	98, 203
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.