Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000394

Physical Location & Seq

Genomic Coordinates Forward (+)

5504829 .. 5506381

Gene Structure 1553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G005260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGGCCACAGTGGTTACCTCACCAGGCGGACCGGAGGTCCTCCAAGTACGGGAAGTGGAAGACCCCAAAATAAAAGAAGACGAGGTCCTAGTCAAAGTCGAGGCCACGTCACTGAACCAGGCCGACAGCTTACAGCGGCTTGGCTTCTACCCACCACCTCCGGGTTCCAGCGAGCTAGTTACTGGGCCTGGAATGTTCTGGAACCATCGAGGCCGTCGGGGAACAAGTGTCACGCTGGAAAGCCGGCGATCAGGTGATCGTTTTGGAATAACTGTAACAATTTGTGTAATGCAGGTGTGTGCTGTTCTTACGGGAGGAGGCTATGCCGAGAAGGTGGCTGTTCCGGCTGGACAAATTCTTCCACTCCCAACCGGTGTTGATGTCATCTTGGATATCCCTGGGGCAGCCTATTTTCAGCGAAACCTTGACGCTTTAAACTTTGATGGGAGGCTTTTCGTGATTGGGACCATGGGTGGTTTAGTTACAGAATTGGATCTTCGTGTTGTGCTTGCGAAGCGCCTCACCATCCAAGCGGCTGGCTTGCTATCTAGAAGTCGAGAAAAACAAAGCATTCATAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0003960 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009987 GO:0010941 GO:0016491 GO:0016651 GO:0016655 GO:0019362 GO:0019637 GO:0034641 GO:0036094 GO:0042802 GO:0042803 GO:0042981 GO:0043067 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0046983 GO:0048037 GO:0048038 GO:0050661 GO:0050662 GO:0050789 GO:0050794 GO:0051186 GO:0055086 GO:0055114 GO:0065007 GO:0070402 GO:0071704 GO:0072524 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

195

Amino Acids

20.95

Weight (kDa)

6.75

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	125 - 190	2.2e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21580
fragaria_vesca	FvH4_3g02190 FvH4_3g02190 FvH4_3g02190 FvH4_3g04320 FvH4_3g04340 FvH4_3g18080 FvH4_3g18080 FvH4_3g18080 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490 FvH4_6g30490
malus_domestica	MD05G1217800.v1.1 MD05G1323900.v1.1 MD12G1074500.v1.1 MD14G1066500.v1.1
prunus_persica	Prupe.4G038700_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059000_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1 Prupe.7G059300_v2.0.a1
pyrus_communis	pycom05g29820
rosa_chinensis	RchiOBHm_Chr1g0318171 RchiOBHm_Chr5g0003241 RchiOBHm_Chr5g0006701 RchiOBHm_Chr5g0006721 RchiOBHm_Chr5g0006731 RchiOBHm_Chr5g0030211 RchiOBHm_Chr5g0030291 RchiOBHm_Chr5g0030331 RchiOBHm_Chr5g0030371 RchiOBHm_Chr5g0030401 RchiOBHm_Chr5g0030471
rosa_laevigata	RLG00000025923 RLG00000025924 RLG00000030556 RLG00000031088 RLG00000031336 RLG00000031418 RLG00000031420 RLG00000031421 RLG00000031422 RLG00000031423 RLG00000033220
rosa_multiflora	Rmu_sc0001886.1_g000010 Rmu_sc0001886.1_g000011 Rmu_sc0001886.1_g000012 Rmu_sc0010917.1_g000018 Rmu_sc0011424.1_g000013 Rmu_sc0017347.1_g000003 Rmu_sc0017347.1_g000005 Rmu_sc0018387.1_g000006 Rmu_sc0018387.1_g000008
rosa_roxburghii	Rroxscaffold_1G00049810 Rroxscaffold_1G00069320 Rroxscaffold_1G00072770 Rroxscaffold_4G00329990 Rroxscaffold_6G00426520
rosa_rugosa	Rorug01G0019200 Rorug01G0019300 Rorug01G0019400 Rorug02G0611300 Rorug02G0611400 Rorug04G0401400 Rorug04G0423700 Rorug04G0424000 Rorug05G0118000
rosa_samantha	Rh1CG030000 Rh1DG040100 Rh2DG133300 Rh3AG010300 Rh3BG010000 Rh3DG010500 Rh5AG026800 Rh5AG026900 Rh5AG027800 Rh5AG051600 Rh5AG051800 Rh5BG028000 Rh5BG050700 Rh5BG129800 Rh5BG129900 Rh5CG029400 Rh5CG029500 Rh5CG030100 Rh5CG059100 Rh5CG059300 Rh5CG059400 Rh5DG026200 Rh5DG049800 Rh5DG049900 Rh5DG214000
rosa_wichuraiana	Rw1G002510 Rw5G002450 Rw5G002640 Rw5G004650 Rw5G005260 Rw5G005270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AciI	CCGC	3 cut(s)	30, 139, 536
AclWI	GGATC	1 cut(s)	504
AcsI	RAATTY	1 cut(s)	357
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	52, 164
AgeI	ACCGGT	1 cut(s)	374
AhdI	GACNNNNNGTC	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	4 cut(s)	25, 120, 190, 400
AluBI	AGCT	2 cut(s)	132, 178
AluI	AGCT	2 cut(s)	132, 178
AlwI	GGATC	1 cut(s)	504
AoxI	GGCC	5 cut(s)	6, 105, 123, 188, 214
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	357
AsiGI	ACCGGT	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	5 cut(s)	32, 40, 88, 188, 468
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	15, 269, 517
AvaII	GGWCC	4 cut(s)	32, 40, 88, 468
BbsI	GAAGAC	2 cut(s)	69, 87
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	3 cut(s)	216, 440, 536
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	4 cut(s)	27, 122, 192, 402
BcnI	CCSGG	1 cut(s)	165
BfaI	CTAG	3 cut(s)	92, 179, 552
BfoI	RGCGCY	1 cut(s)	523
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	140, 408, 537
BlsI	GCNGC	3 cut(s)	141, 409, 538
Bme1390I	CCNGG	5 cut(s)	27, 122, 165, 192, 402
Bme18I	GGWCC	4 cut(s)	32, 40, 88, 468
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	5 cut(s)	32, 40, 88, 188, 468
BmiI	GGNNCC	3 cut(s)	169, 206, 469
BmrFI	CCNGG	5 cut(s)	27, 122, 165, 192, 402
BmrI	ACTGGG	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	2 cut(s)	69, 87
BpuMI	CCSGG	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	400, 401, 471
BsaWI	WCCGGW	2 cut(s)	34, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 164
Bse118I	RCCGGY	2 cut(s)	246, 374
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	4 cut(s)	27, 122, 192, 402
BseDI	CCNNGG	3 cut(s)	400, 401, 471
BseGI	GGATG	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	52, 164
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	5 cut(s)	8, 107, 125, 190, 216
BshTI	ACCGGT	1 cut(s)	374
BsiSI	CCGG	5 cut(s)	35, 164, 247, 347, 375
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	2 cut(s)	52, 164
BsmFI	GGGAC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	5 cut(s)	8, 107, 125, 190, 216
Bsp143I	GATC	3 cut(s)	251, 259, 496
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	3 cut(s)	30, 139, 536
BspANI	GGCC	5 cut(s)	8, 107, 125, 190, 216
BspLI	GGNNCC	3 cut(s)	169, 206, 469
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	504
BsrFI	RCCGGY	2 cut(s)	246, 374
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	2 cut(s)	246, 374
BssECI	CCNNGG	3 cut(s)	400, 401, 471
BssMI	GATC	3 cut(s)	251, 259, 496
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	4 cut(s)	27, 122, 192, 402
Bst4CI	ACNGT	2 cut(s)	13, 277
BstC8I	GCNNGC	5 cut(s)	176, 248, 513, 541, 545
BstDSI	CCRYGG	1 cut(s)	471
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	528
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	3 cut(s)	254, 262, 499
BstMBI	GATC	3 cut(s)	251, 259, 496
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 517
BstNI	CCWGG	4 cut(s)	27, 122, 192, 402
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	5 cut(s)	25, 120, 163, 190, 400
BstV1I	GCAGC	1 cut(s)	419
BstV2I	GAAGAC	2 cut(s)	69, 87
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	496
BsuRI	GGCC	5 cut(s)	8, 107, 125, 190, 216
BtgI	CCRYGG	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	18, 113
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	5 cut(s)	176, 248, 513, 541, 545
CfoI	GCGC	1 cut(s)	522
Cfr10I	RCCGGY	2 cut(s)	246, 374
Cfr13I	GGNCC	5 cut(s)	32, 40, 88, 188, 468
CpoI	CGGWCCG	1 cut(s)	32
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	374
CspI	CGGWCCG	1 cut(s)	32
CviAII	CATG	1 cut(s)	472
CviQI	GTAC	1 cut(s)	50
DpnI	GATC	3 cut(s)	253, 261, 498
DpnII	GATC	3 cut(s)	251, 259, 496
DraI	TTTAAA	1 cut(s)	438
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	471
Eco32I	GATATC	1 cut(s)	397
Eco47I	GGWCC	4 cut(s)	32, 40, 88, 468
Eco91I	GGTNACC	1 cut(s)	16
EcoO109I	RGGNCCY	2 cut(s)	40, 88
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	4 cut(s)	25, 120, 190, 400
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	1 cut(s)	475
FaiI	YATR	3 cut(s)	327, 473, 579
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	1 cut(s)	471
Fnu4HI	GCNGC	3 cut(s)	140, 408, 537
FokI	GGATG	1 cut(s)	515
Fsp4HI	GCNGC	3 cut(s)	140, 408, 537
FspBI	CTAG	3 cut(s)	92, 179, 552
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	3 cut(s)	140, 408, 537
HaeII	RGCGCY	1 cut(s)	523
HaeIII	GGCC	5 cut(s)	8, 107, 125, 190, 216
HapII	CCGG	5 cut(s)	35, 164, 247, 347, 375
HgaI	GACGC	1 cut(s)	440
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	1 cut(s)	475
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HpaII	CCGG	5 cut(s)	35, 164, 247, 347, 375
HphI	GGTGA	3 cut(s)	15, 269, 517
Hpy188III	TCNNGA	4 cut(s)	202, 460, 552, 560
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	2 cut(s)	13, 277
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 517
HpySE526I	ACGT	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	475
HspAI	GCGC	1 cut(s)	520
KroI	GCCGGC	1 cut(s)	246
KroNI	GCCGGC	1 cut(s)	248
Kzo9I	GATC	3 cut(s)	251, 259, 496
Lsp1109I	GCAGC	1 cut(s)	419
MaeI	CTAG	3 cut(s)	92, 179, 552
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	6 cut(s)	16, 111, 181, 232, 277, 484
MalI	GATC	3 cut(s)	253, 261, 498
MboI	GATC	3 cut(s)	251, 259, 496
MboII	GAAGA	4 cut(s)	74, 92, 353, 491
MflI	RGATCY	1 cut(s)	496
MluCI	AATT	3 cut(s)	282, 357, 491
MroNI	GCCGGC	1 cut(s)	246
MseI	TTAA	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	5 cut(s)	35, 164, 247, 347, 375
MspR9I	CCNGG	5 cut(s)	27, 122, 165, 192, 402
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	4 cut(s)	27, 122, 192, 402
MwoI	GCNNNNNNNGC	2 cut(s)	347, 517
NaeI	GCCGGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	3 cut(s)	251, 259, 496
NgoMIV	GCCGGC	1 cut(s)	246
NlaIII	CATG	1 cut(s)	475
NlaIV	GGNNCC	3 cut(s)	169, 206, 469
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	111, 232
PaqCI	CACCTGC	1 cut(s)	286
PasI	CCCWGGG	1 cut(s)	401
PctI	GAATGC	1 cut(s)	573
PdiI	GCCGGC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	86
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	141, 409, 538
PpuMI	RGGWCCY	2 cut(s)	40, 88
Psp5II	RGGWCCY	2 cut(s)	40, 88
Psp6I	CCWGG	4 cut(s)	25, 120, 190, 400
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	4 cut(s)	25, 120, 190, 400
PspN4I	GGNNCC	3 cut(s)	169, 206, 469
PspPI	GGNCC	5 cut(s)	32, 40, 88, 188, 468
PspPPI	RGGWCCY	2 cut(s)	40, 88
PsuI	RGATCY	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	86
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
Rsr2I	CGGWCCG	1 cut(s)	32
RsrII	CGGWCCG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	3 cut(s)	140, 408, 537
Sau3AI	GATC	3 cut(s)	251, 259, 496
Sau96I	GGNCC	5 cut(s)	32, 40, 88, 188, 468
ScrFI	CCNGG	5 cut(s)	27, 122, 165, 192, 402
SinI	GGWCC	4 cut(s)	32, 40, 88, 468
Sse9I	AATT	3 cut(s)	282, 357, 491
SsiI	CCGC	3 cut(s)	30, 139, 536
SspMI	CTAG	3 cut(s)	92, 179, 552
StyD4I	CCNGG	5 cut(s)	25, 120, 163, 190, 400
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	13, 277
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	3 cut(s)	102, 211, 559
TasI	AATT	3 cut(s)	282, 357, 491
TauI	GCSGC	2 cut(s)	142, 539
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	2 cut(s)	18, 120
TseFI	GTSAC	2 cut(s)	111, 232
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	111, 232
TspDTI	ATGAA	2 cut(s)	17, 566
TspRI	CASTG	2 cut(s)	18, 120
Tth111I	GACNNNGTC	1 cut(s)	86
VpaK11BI	GGWCC	4 cut(s)	32, 40, 88, 468
XapI	RAATTY	1 cut(s)	357
XbaI	TCTAGA	1 cut(s)	551
XspI	CTAG	3 cut(s)	92, 179, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.